mRNA_H-paniculata_contig4324.11032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4324.11032.1
Unique NamemRNA_H-paniculata_contig4324.11032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4324.11032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4324contigH-paniculata_contig4324:1392..4046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_002500.1
Exons2
Model size371
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930313.2652948-CDS-H-paniculata_contig4324:1391..14801622930313.2652948-CDS-H-paniculata_contig4324:1391..1480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4324 1392..1480 +
1691481237.294964-CDS-H-paniculata_contig4324:1391..14801691481237.294964-CDS-H-paniculata_contig4324:1391..1480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4324 1392..1480 +
1622930313.2806902-CDS-H-paniculata_contig4324:3764..40441622930313.2806902-CDS-H-paniculata_contig4324:3764..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4324 3765..4044 +
1691481237.3064344-CDS-H-paniculata_contig4324:3764..40441691481237.3064344-CDS-H-paniculata_contig4324:3764..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4324 3765..4044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4324.11032.1prot_H-paniculata_contig4324.11032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4324 1392..4044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4324.11032.1

>prot_H-paniculata_contig4324.11032.1 ID=prot_H-paniculata_contig4324.11032.1|Name=mRNA_H-paniculata_contig4324.11032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
CEYCGTRLKRRRATNKSPFVSGAENPIRVRLVPNQDERCRNKTPDRRLSF
LADVWVHAKVPSDGFVWCRSCNSERDASGASGAPGSQMRALARLQSAVPR
FHPGGVSRSTFGGGRAAASDLAR
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mRNA from alignment at H-paniculata_contig4324:1392..4046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4324.11032.1 ID=mRNA_H-paniculata_contig4324.11032.1|Name=mRNA_H-paniculata_contig4324.11032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2655bp|location=Sequence derived from alignment at H-paniculata_contig4324:1392..4046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAATATTGCGGAACGCGTCTTAAACGACGACGTGCCACCAACAAGTC
GCCGTTTGTTTCAGGTGCCGAGAACCCAATTCGCGTGAGGTAAGCGTTTT
ATTTGTTTTCGTCTTGTTTCGTGTGTCGCGTTTTATAACTAAAGCAGTAG
TGAACACCAAGGGAAGTTTTAACGTGTGAGGATTCTGTACTTTCCAGTGC
AGTCTAAAACCGAATCTCAAAACGGCCAAGTCACGTACAACGGCTATCCC
ACAATATGCCCTAGGTTTATACATGATGAACCTCAGGGATGACCGATACG
ATACTATTCCCCGCGTTTTGCGGGGGTCGGAAATCGGGGCTCGGTACTTG
CTATCTTGCCGTGGGCTTCAGCTCCTTCCCTCTTCCCTCTTCTCTCACAA
CGCTTCCGAGTGGTAGATACAGAGGGTCTACACTCTGGGGTGGAAAGGAA
AATAGAACACATGCATACTATACCCATATTGACAGGTCCTGGAGTTTTGA
TGTTTGGTTTGTTCGGACATTGTGCCATATTTGGAAGCCCCGTCGACTTT
GTTTTTTTAAATATATACTTGTTTTGAATGGAGATTGAGGGGTTTGGACG
GGGGGGGTTGTGTGATGAAAACAAATATCTGGGTGTCTATTGGCACACCC
ACGGCTATGCCAATAGAATCCAGGTTTAGTCGTCGTGCCTATGTCGTCAT
TATCTAAAGCCTCAACTCGTCGGACGAACACGAATTACACTCGGAGCGTT
CGAGAGGAAAATTGGGAAGAGATCGCCCGAAGGTTCAGCCTGAGCACGGT
TACTTTTGTGTGCCCTGGACTATCATCTACGATACCAACGTTCCGAATAA
TCGTAGAACTAGTAAACAGGGGGTCAGCACCTTACTCCTGTGTCTATGTG
TCATCCACCACATTCTGAACCTTCAGGCGAATATATATATACATGTATTT
TTTTTTATGTCGCGAATGCTCTGATTATACGTGTTCATCCAGGGGGGAGT
GGGGGAGGGAGGGTTTCTTATGTTTGCGTGCCGTAGTTGTTAGAGCAGTT
GCCCGCGCATCCTCGAGATAGATGACGGTGCTTTGTTTTTATCAGACATA
TTTGTGATGGCCAATTACTGAGGGTTAGGATTAGCACATTTGTCCGAGAC
GTGCAGAGTATCTTTGTGTTCCTTGGTTGGCCCACGGCGACGTCCGCACA
GTCCACGCTTCGTCCTCTTGCCCATGTAGTCATTATCGGAAACCTATGAT
AGATGCCCATACGACTGACATCGGTCGCATGTAGGCATATATTGGTATGA
ATAGTTGTGTTTTGGAAGTTAAGCTGAGTACAGACTTGGAAAAAGCCCAG
AAACCACGGACCTACGCCCGAACGGGTGGGGTAGCTCGTGAACTGAGCAT
GGCTGGAAGTCTAGTCAGAGGTCTTTTAGTCCCTCACAACGCTTCCGAGT
GGTGCATACAGAGGGTGTACACTCTGGGGTGGAAAGGAAAGAGGTCTTTT
AGTGGATGCAACCCCCACACTGCCTACTTGGTTCAGCCGAACCGGGGTGG
CGCCTACCCCGCAGAGGAACAAATAACTCTGTTCTGTTAAAGGAAACTTA
GAAATACTTTGGTATGGAAGCATCGGGTAGAGGTTTTTGCCTTAGCCTTC
CGGGGGTTAAAAAACAAAAGACAGGTCCCAAGGTGAACCGCTTTCTTTCG
AGGGAATTATGATTTTTTAATTCTGTACATTTCGCATGAAAGTCCACGAA
GGTCAATGAAGGTCTTCATGAATTGTGGATCATGACTGTGACAACACGGT
GATGGATAGATACTTGGCGCCTTCCAAAACAACCCGTTCGAATTGATAGC
TGAAGGCCCTTTGTCTCTGCGTGGAGGGTGTGCGATTTTAGAGTTGTATG
AGCGCACCTCCGCACATTTTCTACTTTTTTTAGCATGATGGTAAAAAATT
GAATCGGGAATGAACTTTCCACCGAAGTATCTGTCAGTAGTTGAAAATAG
AACCTTATTCCGAGGCGTGGAGTTCTGTGCCCCCCCCTCCTCTCCTCCCC
AAGTTTGGCCAATTTGTGGATAATAATCAGGTAGTCCAGCAGCGTAAGGA
TTCTAAGCATCACCTCAGCTTTGTTTTACGGTTCTTGTGACCTCGCTTAG
TAATTGATAAGTGCATACTATACACCTGAAGGTTGAATTTTTACCTGCAA
TAACCTACCTCCACGTGGGCACAACAGAGTTATTGTTTGAGCTTCAGAGC
TATGGTTGAACTGACTATCGCAGGTCCTTGTGACCCTCTCCCCTCCATCA
TCACCACCACCACCAGCACCTCACATACGCTTTCCTCTATGTGTGCATCG
TTCGTTGGACCTACGTGCCGAAGATTGGTTCCAAATCAGGACGAGCGCTG
CAGGAATAAAACCCCAGACCGTCGGCTTAGCTTTCTCGCAGACGTTTGGG
TGCACGCGAAGGTTCCTTCGGATGGTTTCGTGTGGTGTCGTTCGTGCAAC
TCAGAACGGGATGCGTCGGGGGCATCTGGTGCGCCAGGGTCGCAGATGCG
CGCGCTCGCGCGGTTGCAGAGCGCCGTACCGCGTTTTCACCCCGGAGGGG
TCTCCAGGTCGACATTCGGCGGTGGTCGAGCAGCGGCGAGCGATTTGGCT
CGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4324:1392..4046+

>mRNA_H-paniculata_contig4324.11032.1 ID=mRNA_H-paniculata_contig4324.11032.1|Name=mRNA_H-paniculata_contig4324.11032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig4324:1392..4046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAATATTGCGGAACGCGTCTTAAACGACGACGTGCCACCAACAAGTC
GCCGTTTGTTTCAGGTGCCGAGAACCCAATTCGCGTGAGTGCGAATATTG
CGGAACGCGTCTTAAACGACGACGTGCCACCAACAAGTCGCCGTTTGTTT
CAGGTGCCGAGAACCCAATTCGCGTGAGATTGGTTCCAAATCAGGACGAG
CGCTGCAGGAATAAAACCCCAGACCGTCGGCTTAGCTTTCTCGCAGACGT
TTGGGTGCACGCGAAGGTTCCTTCGGATGGTTTCGTGTGGTGTCGTTCGT
GCAACTCAGAACGGGATGCGTCGGGGGCATCTGGTGCGCCAGGGTCGCAG
ATGCGCGCGCTCGCGCGGTTGCAGAGCGCCGTACCGCGTTTTCACCCCGG
AGGGGTCTCCAGGTCGACATTCGGCGGTGGTCGAGCAGCGGCGAGCGATT
TGGCTCGGATTGGTTCCAAATCAGGACGAGCGCTGCAGGAATAAAACCCC
AGACCGTCGGCTTAGCTTTCTCGCAGACGTTTGGGTGCACGCGAAGGTTC
CTTCGGATGGTTTCGTGTGGTGTCGTTCGTGCAACTCAGAACGGGATGCG
TCGGGGGCATCTGGTGCGCCAGGGTCGCAGATGCGCGCGCTCGCGCGGTT
GCAGAGCGCCGTACCGCGTTTTCACCCCGGAGGGGTCTCCAGGTCGACAT
TCGGCGGTGGTCGAGCAGCGGCGAGCGATTTGGCTCGG
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