mRNA_H-paniculata_contig11722.1103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11722.1103.1
Unique NamemRNA_H-paniculata_contig11722.1103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11722.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11722contigH-paniculata_contig11722:3628..4270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size477
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.4143217-UTR-H-paniculata_contig11722:3627..37931622928881.4143217-UTR-H-paniculata_contig11722:3627..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 3628..3793 +
1691480655.1910932-UTR-H-paniculata_contig11722:3627..37931691480655.1910932-UTR-H-paniculata_contig11722:3627..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 3628..3793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.4270673-CDS-H-paniculata_contig11722:3793..42701622928881.4270673-CDS-H-paniculata_contig11722:3793..4270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11722 3794..4270 +
1691480655.2031622-CDS-H-paniculata_contig11722:3793..42701691480655.2031622-CDS-H-paniculata_contig11722:3793..4270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11722 3794..4270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11722.1103.1prot_H-paniculata_contig11722.1103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11722 3794..4270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11722.1103.1

>prot_H-paniculata_contig11722.1103.1 ID=prot_H-paniculata_contig11722.1103.1|Name=mRNA_H-paniculata_contig11722.1103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MPLSMLQPPPALLPSMPMLPATTFSGREGHHSYRRRRFPDCCCYWRTQCS
GRSPITRHHHRRRRFACLAVPVNLPRCSRIRPERSTDRNLRWVQPSLGHV
PPLLVPRYAAGWGSRHVRPSTTYLQVVARALSLSSQSCCRGHSSTLPGYG
RSEARPSP*
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mRNA from alignment at H-paniculata_contig11722:3628..4270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11722.1103.1 ID=mRNA_H-paniculata_contig11722.1103.1|Name=mRNA_H-paniculata_contig11722.1103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=643bp|location=Sequence derived from alignment at H-paniculata_contig11722:3628..4270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTTTCCCTGACAGAACCCCCTCTACTACTACTGTCGCTTGGCTCAAA
CACAGCGCGACTAGTGGGAGAAGCGATCGGCTCGATATGGTAGTGTTGGT
ACCGGCACCCTCCTTGCTGCTTCCCTATCATCCCCGTCCCCGTTGCCGCC
GCCCCTACACCTACCCATGCCTCTGTCCATGCTCCAGCCTCCCCCTGCGC
TCCTACCCTCGATGCCAATGCTCCCGGCGACCACCTTCTCCGGCCGTGAA
GGTCACCATTCCTACCGCCGTCGCCGCTTCCCCGATTGCTGTTGCTACTG
GCGAACGCAGTGCTCCGGTCGCTCTCCCATAACCCGCCACCACCACCGCC
GCCGCCGCTTCGCTTGTCTCGCCGTCCCCGTGAACCTTCCCCGGTGCTCC
CGAATCCGGCCCGAGAGGTCGACCGACCGAAATCTTCGGTGGGTGCAACC
GTCGCTCGGTCATGTTCCTCCTCTCCTGGTTCCAAGATATGCAGCGGGAT
GGGGGTCGCGGCACGTTCGCCCCTCCACCACATATCTCCAGGTCGTTGCG
AGGGCTCTCTCCCTCTCCTCCCAAAGTTGCTGCCGAGGCCACTCCTCAAC
CTTACCAGGTTACGGTCGGTCGGAGGCGAGGCCAAGTCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11722:3628..4270+

>mRNA_H-paniculata_contig11722.1103.1 ID=mRNA_H-paniculata_contig11722.1103.1|Name=mRNA_H-paniculata_contig11722.1103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11722:3628..4270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCTGTCCATGCTCCAGCCTCCCCCTGCGCTCCTACCCTCGATGCC
AATGCTCCCGGCGACCACCTTCTCCGGCCGTGAAGGTCACCATTCCTACC
GCCGTCGCCGCTTCCCCGATTGCTGTTGCTACTGGCGAACGCAGTGCTCC
GGTCGCTCTCCCATAACCCGCCACCACCACCGCCGCCGCCGCTTCGCTTG
TCTCGCCGTCCCCGTGAACCTTCCCCGGTGCTCCCGAATCCGGCCCGAGA
GGTCGACCGACCGAAATCTTCGGTGGGTGCAACCGTCGCTCGGTCATGTT
CCTCCTCTCCTGGTTCCAAGATATGCAGCGGGATGGGGGTCGCGGCACGT
TCGCCCCTCCACCACATATCTCCAGGTCGTTGCGAGGGCTCTCTCCCTCT
CCTCCCAAAGTTGCTGCCGAGGCCACTCCTCAACCTTACCAGGTTACGGT
CGGTCGGAGGCGAGGCCAAGTCCGTGAATGCCTCTGTCCATGCTCCAGCC
TCCCCCTGCGCTCCTACCCTCGATGCCAATGCTCCCGGCGACCACCTTCT
CCGGCCGTGAAGGTCACCATTCCTACCGCCGTCGCCGCTTCCCCGATTGC
TGTTGCTACTGGCGAACGCAGTGCTCCGGTCGCTCTCCCATAACCCGCCA
CCACCACCGCCGCCGCCGCTTCGCTTGTCTCGCCGTCCCCGTGAACCTTC
CCCGGTGCTCCCGAATCCGGCCCGAGAGGTCGACCGACCGAAATCTTCGG
TGGGTGCAACCGTCGCTCGGTCATGTTCCTCCTCTCCTGGTTCCAAGATA
TGCAGCGGGATGGGGGTCGCGGCACGTTCGCCCCTCCACCACATATCTCC
AGGTCGTTGCGAGGGCTCTCTCCCTCTCCTCCCAAAGTTGCTGCCGAGGC
CACTCCTCAACCTTACCAGGTTACGGTCGGTCGGAGGCGAGGCCAAGTCC
GTGA
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