mRNA_H-paniculata_contig43191.11024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43191.11024.1
Unique NamemRNA_H-paniculata_contig43191.11024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43191.11024.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.310e-28
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   10 RCEEFADAIVGLNAAYLSRIKAQIIKWVQNLRSQHLEAQLNVDGHYVTTLPDDMFNLINMQV 195
            RCEEFA AI GLNAAYL+RIKAQIIKWVQNLR+QHLE QL+ +GHYVTTLPDDMFNLINMQ+
Sbjct:  358 RCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 419
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BLAST of mRNA_H-paniculata_contig43191.11024.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.080e-28
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   10 RCEEFADAIVGLNAAYLSRIKAQIIKWVQNLRSQHLEAQLNVDGHYVTTLPDDMFNLINMQV 195
            RCEEFA AI GLNAAYL+RIKAQIIKWVQNLR+QHLE QL+ +GHYVTTLPDDMFNLINMQ+
Sbjct:  195 RCEEFAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 256
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BLAST of mRNA_H-paniculata_contig43191.11024.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.490e-15
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   16 EEFADAIVGLNAAYLSRIKAQIIKWVQNLRSQHLEAQLNVDGHYVTTLPDDMFNLINMQV 195
            ++FA AIV LN+ YL RIKAQI+KWV NL++Q  E   + DG ++TT PDDMFNL+N+Q+
Sbjct:  378 DKFAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQI 437
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BLAST of mRNA_H-paniculata_contig43191.11024.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 48.1 bits (113), Expect = 9.410e-5
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 PKPRCEEFADAIVGLNAAYLSRIKAQIIKWVQNLRSQHLEAQLNVDGHYVTTLPDDMFNLINMQV 195
            P+   + FA A   L   YL RI  Q+  W   +R++  E + +  G  VTT P+DMF +I MQV
Sbjct:  558 PRGPAKAFATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQV 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43191.11024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5L8_ECTSI2.310e-2885.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE4.080e-2885.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA4.490e-1558.33Exocyst complex component Sec6-domain-containing p... [more]
F0Y5W6_AURAN9.410e-538.46Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43191contigH-paniculata_contig43191:1294..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.9517374-CDS-H-paniculata_contig43191:1293..14881622930311.9517374-CDS-H-paniculata_contig43191:1293..1488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43191 1294..1488 +
1691481236.7183309-CDS-H-paniculata_contig43191:1293..14881691481236.7183309-CDS-H-paniculata_contig43191:1293..1488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43191 1294..1488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43191.11024.1prot_H-paniculata_contig43191.11024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43191 1294..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43191.11024.1

>prot_H-paniculata_contig43191.11024.1 ID=prot_H-paniculata_contig43191.11024.1|Name=mRNA_H-paniculata_contig43191.11024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
PKPRCEEFADAIVGLNAAYLSRIKAQIIKWVQNLRSQHLEAQLNVDGHYV
TTLPDDMFNLINMQV
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mRNA from alignment at H-paniculata_contig43191:1294..1488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43191.11024.1 ID=mRNA_H-paniculata_contig43191.11024.1|Name=mRNA_H-paniculata_contig43191.11024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig43191:1294..1488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAACCCAGGTGTGAGGAGTTTGCAGACGCCATCGTTGGGCTCAACGC
GGCGTACCTCAGTCGGATCAAGGCCCAGATTATCAAGTGGGTGCAGAACT
TGCGGAGCCAACACCTGGAGGCGCAATTGAACGTTGATGGACACTACGTA
ACCACTCTGCCAGATGACATGTTTAATCTCATCAACATGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig43191:1294..1488+

>mRNA_H-paniculata_contig43191.11024.1 ID=mRNA_H-paniculata_contig43191.11024.1|Name=mRNA_H-paniculata_contig43191.11024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig43191:1294..1488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAACCCAGGTGTGAGGAGTTTGCAGACGCCATCGTTGGGCTCAACGC
GGCGTACCTCAGTCGGATCAAGGCCCAGATTATCAAGTGGGTGCAGAACT
TGCGGAGCCAACACCTGGAGGCGCAATTGAACGTTGATGGACACTACGTA
ACCACTCTGCCAGATGACATGTTTAATCTCATCAACATGCAGGTACCAAA
ACCCAGGTGTGAGGAGTTTGCAGACGCCATCGTTGGGCTCAACGCGGCGT
ACCTCAGTCGGATCAAGGCCCAGATTATCAAGTGGGTGCAGAACTTGCGG
AGCCAACACCTGGAGGCGCAATTGAACGTTGATGGACACTACGTAACCAC
TCTGCCAGATGACATGTTTAATCTCATCAACATGCAGGTA
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