prot_H-paniculata_contig4318.11022.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4318.11022.1
Unique Nameprot_H-paniculata_contig4318.11022.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.410e-46
Identity = 79/137 (57.66%), Postives = 106/137 (77.37%), Query Frame = 0 
Query:   53 FKLFRARYPLEGAPEFARLHVAVIVQDISSNAEEA----SDQKIDGKARPTLLLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAVFVGDTNATLKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRI 185
            FK+F+ARYPLEG P   +LH+A+IV+D  S  E+     S+ +  G+    L+L+DFLP+EPTA +TT RLL G DV GNLRERELR LP G+V+VG+++AT+ +MR FV+ YPDRLSLVSN+C +FVDAF+A+HR+
Sbjct:   47 FKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRR---LVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRL 180
[Close]
BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Match: I0Z984_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z984_COCSC)

HSP 1 Score: 58.9 bits (141), Expect = 8.480e-8
Identity = 39/122 (31.97%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:   76 IVQDISSNAEEAS--------DQKIDGKARPTLLLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAV-FVGDTNA--TLKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRIG 186
            ++Q + S AE+ +        +++  G   P+  ++DFLP +  AL+TT  L+ G  V G LRER+LRRLPR     +G+      ++  R F   +P  L L+ N C +   A +  H  G
Sbjct:    7 MLQTLGSRAEDVAAVHTMAIIEEQAPGADAPSYTVFDFLPADAMALRTTATLMAGGSVKGILRERQLRRLPRRRCSLIGEATVPEAMQMARCFNEIWPCELKLLVNDCHSHTAALV-HHLTG 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7T2_ECTSI3.410e-4657.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I0Z984_COCSC8.480e-831.97Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36342FAMILY NOT NAMEDcoord: 49..177
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..186
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..45
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4318contigH-paniculata_contig4318:9632..11555 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4318.11022.1mRNA_H-paniculata_contig4318.11022.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4318 9562..11749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4318.11022.1 ID=prot_H-paniculata_contig4318.11022.1|Name=mRNA_H-paniculata_contig4318.11022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MVGRIITVRRKIVIGLIPWVLLFLWTVTNCSVFAYSSGPLPTVQAAEAVS
RRFKLFRARYPLEGAPEFARLHVAVIVQDISSNAEEASDQKIDGKARPTL
LLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAVFVGDTNAT
LKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRIG*
back to top