mRNA_H-paniculata_contig4317.11018.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4317.11018.1
Unique NamemRNA_H-paniculata_contig4317.11018.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4317.11018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4317contigH-paniculata_contig4317:5448..6348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.246779-CDS-H-paniculata_contig4317:5447..55031622930311.246779-CDS-H-paniculata_contig4317:5447..5503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 5448..5503 +
1691481236.4270267-CDS-H-paniculata_contig4317:5447..55031691481236.4270267-CDS-H-paniculata_contig4317:5447..5503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 5448..5503 +
1622930311.2690203-CDS-H-paniculata_contig4317:6173..63481622930311.2690203-CDS-H-paniculata_contig4317:6173..6348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 6174..6348 +
1691481236.436266-CDS-H-paniculata_contig4317:6173..63481691481236.436266-CDS-H-paniculata_contig4317:6173..6348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 6174..6348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4317.11018.1prot_H-paniculata_contig4317.11018.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4317 5448..6348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4317.11018.1

>prot_H-paniculata_contig4317.11018.1 ID=prot_H-paniculata_contig4317.11018.1|Name=mRNA_H-paniculata_contig4317.11018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MAESGGGIRRRLASAPKFRAGGSKNALGSRNGWGGRPGWQRQSCLCQGGR
FISRTGYSKDGGPSQETRLARSALVP*
back to top

mRNA from alignment at H-paniculata_contig4317:5448..6348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4317.11018.1 ID=mRNA_H-paniculata_contig4317.11018.1|Name=mRNA_H-paniculata_contig4317.11018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=901bp|location=Sequence derived from alignment at H-paniculata_contig4317:5448..6348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGTCTGGCGGCGGGATTCGACGGAGATTGGCATCAGCACCCAA
GTTCAGGTGGATACTAGACTTGTGAGACTTGTTCGTACCAAGACGAAGTA
TGTTAGTGAAGGAACAATTAAGGGTCAACCTTGGAGTTGCGCGAAATCAA
TTGGGCCTGGAAGAATCGTGGTAGGTGAAGAAGCGGGAATGGGCGACCTA
CAGTTGGCGTTGGAGGATGAAAAGGTTTTTGTTGAATAGCGATCGAGCGC
GGGATTTATTCCTATAAGTCGTGCGAGCTCGTGTGTGATGACCCAACAGG
AATCAATCTTCGCCCGCCGACCATCCATCACAGACCGTACATTGCGTGCC
GCGGCCATGGCGCGTCTTGCCAGATATGGTGACGAGAATGAGGTTGTTTT
TGCGGAACGAGTGGAGTTGGTGCCAACAGCAGTGTTTGATTCGGCTGCGT
GGGCCGATGTTACGATTTTGTCGGATTTGAAGCGGGAGATGTAAGATAGT
ATTGTGCTCAAAGATGATGTTTCGCTTTCACTTCGAAGCGTCCAGGAATG
TGCATCTGCCACTATGTCCCCTTGTTTGGCCCAAGACCCGTGGTCCAACA
GGGGTCTGTACGGTTGTTTGAGACACGCTGCTGTACAGATGTCGTTGTGG
AAACCCGTTGTGTTGTTAAATCTGCTGGACTGTGCACTCTGTCGTGGACT
GCCTGTCATTCTTGGCGAGGAAGCAGAGCCGGTGGAAGCAAGAATGCGTT
AGGGAGCCGGAACGGGTGGGGAGGCAGGCCAGGGTGGCAGAGACAGTCCT
GCTTGTGTCAGGGTGGTCGATTTATATCGCGGACGGGGTACAGTAAAGAT
GGTGGGCCATCCCAGGAGACACGGTTGGCGCGCTCCGCGTTGGTACCGTA
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4317:5448..6348+

>mRNA_H-paniculata_contig4317.11018.1 ID=mRNA_H-paniculata_contig4317.11018.1|Name=mRNA_H-paniculata_contig4317.11018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig4317:5448..6348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGTCTGGCGGCGGGATTCGACGGAGATTGGCATCAGCACCCAA
GTTCAGATGGCGGAGTCTGGCGGCGGGATTCGACGGAGATTGGCATCAGC
ACCCAAGTTCAGAGCCGGTGGAAGCAAGAATGCGTTAGGGAGCCGGAACG
GGTGGGGAGGCAGGCCAGGGTGGCAGAGACAGTCCTGCTTGTGTCAGGGT
GGTCGATTTATATCGCGGACGGGGTACAGTAAAGATGGTGGGCCATCCCA
GGAGACACGGTTGGCGCGCTCCGCGTTGGTACCGTAGAGCCGGTGGAAGC
AAGAATGCGTTAGGGAGCCGGAACGGGTGGGGAGGCAGGCCAGGGTGGCA
GAGACAGTCCTGCTTGTGTCAGGGTGGTCGATTTATATCGCGGACGGGGT
ACAGTAAAGATGGTGGGCCATCCCAGGAGACACGGTTGGCGCGCTCCGCG
TTGGTACCGTAG
back to top