mRNA_H-paniculata_contig43154.11015.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43154.11015.1
Unique NamemRNA_H-paniculata_contig43154.11015.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43154.11015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43154contigH-paniculata_contig43154:1269..1520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.9461007-CDS-H-paniculata_contig43154:1268..15201622930310.9461007-CDS-H-paniculata_contig43154:1268..1520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43154 1269..1520 -
1691481236.3367803-CDS-H-paniculata_contig43154:1268..15201691481236.3367803-CDS-H-paniculata_contig43154:1268..1520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43154 1269..1520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43154.11015.1prot_H-paniculata_contig43154.11015.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43154 1269..1520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43154.11015.1

>prot_H-paniculata_contig43154.11015.1 ID=prot_H-paniculata_contig43154.11015.1|Name=mRNA_H-paniculata_contig43154.11015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
ELQSWDEECVAKHLDAINGSAINLEELQDLCLMNNESVVQVMDLAGVVNA
QGLLTDVTQRCRLTLTDKNRLIFTQVDVRIQHR*
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mRNA from alignment at H-paniculata_contig43154:1269..1520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43154.11015.1 ID=mRNA_H-paniculata_contig43154.11015.1|Name=mRNA_H-paniculata_contig43154.11015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig43154:1269..1520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTGCAGAGCTGGGATGAAGAGTGTGTCGCGAAACACCTCGACGCCAT
CAATGGTAGTGCCATCAATCTGGAGGAGCTGCAGGACTTGTGCCTTATGA
ACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATGCA
CAGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACGGA
CAAAAACCGCCTGATATTTACCCAGGTAGACGTGCGCATACAGCACAGGT
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig43154:1269..1520-

>mRNA_H-paniculata_contig43154.11015.1 ID=mRNA_H-paniculata_contig43154.11015.1|Name=mRNA_H-paniculata_contig43154.11015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig43154:1269..1520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTGCAGAGCTGGGATGAAGAGTGTGTCGCGAAACACCTCGACGCCAT
CAATGGTAGTGCCATCAATCTGGAGGAGCTGCAGGACTTGTGCCTTATGA
ACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATGCA
CAGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACGGA
CAAAAACCGCCTGATATTTACCCAGGTAGACGTGCGCATACAGCACAGGT
AGGAACTGCAGAGCTGGGATGAAGAGTGTGTCGCGAAACACCTCGACGCC
ATCAATGGTAGTGCCATCAATCTGGAGGAGCTGCAGGACTTGTGCCTTAT
GAACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATG
CACAGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACG
GACAAAAACCGCCTGATATTTACCCAGGTAGACGTGCGCATACAGCACAG
GTAG
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