mRNA_H-paniculata_contig43140.11013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43140.11013.1
Unique NamemRNA_H-paniculata_contig43140.11013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43140.11013.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.770e-34
Identity = 90/209 (43.06%), Postives = 106/209 (50.72%), Query Frame = 1 
Query:    1 GLEGSIEQAPT---------GTVSARIFSRVFCASWVAKPSLPLELAPGEVQGFVLDLSPDPTVEGLLPRRSGGLLETPVTFVWILDDASNADGANGGGGGK------------------------------------SAPRPLRAGRPL---------------TTSVHLAQWRAEERASDEVLVRVRGQPRVLVNRVFEVCTEGDNM 447
            GL+GSIEQ P          G  +   FSRVF ASWVAKP LPLELAPGEVQGFV+ +SP    E L PRR+GG  E+PVTFVW L        A GG                                        S+P P+ +  P                TTSVHLAQW++E+RA DEVLVRV+GQPRV +NRVFEV  +  N+
Sbjct:  338 GLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISP--AGEPLPPRRAGGHFESPVTFVWTL--------AKGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTPMTSASPSAGLRLPRLRPAAATPTTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNL 536
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BLAST of mRNA_H-paniculata_contig43140.11013.1 vs. uniprot
Match: A0A6H5JW59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.220e-33
Identity = 84/195 (43.08%), Postives = 101/195 (51.79%), Query Frame = 1 
Query:    1 GLEGSIEQAPT---------GTVSARIFSRVFCASWVAKPSLPLELAPGEVQGFVLDLSPDPTVEGLLPRRSGGLLETPVTFVWILDDASNADGANG-------------------------------------GGGGKSAPRPLRAGRPLTTSVHLAQWRAEERASDEVLVRVRGQPRVLVNRVFEVCTEGDNM 447
            GL+GSIEQ P          G  +   F RVF ASWVAKP LPLELAPGEVQGFV+ +SP    E L PRR+GG LE+PVTFVW L     A                                               +  RP  +    TTSV+LAQW++E+RA DEVLVRV+GQP+V +NRVFEV  +  N+
Sbjct:   16 GLDGSIEQPPLVGASSLGGGGAPATGSFLRVFSASWVAKPPLPLELAPGEVQGFVVSISP--AGEPLPPRRAGGHLESPVTFVWTLGKGGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTSASPSAGLRPTVSAATPTTSVYLAQWQSEQRARDEVLVRVKGQPKVKLNRVFEVSLQVRNL 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43140.11013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI50_ECTSI5.770e-3443.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW59_9PHAE1.220e-3343.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43140contigH-paniculata_contig43140:362..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003550.1
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.7928798-CDS-H-paniculata_contig43140:361..5711622930310.7928798-CDS-H-paniculata_contig43140:361..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43140 362..571 +
1691481236.2810261-CDS-H-paniculata_contig43140:361..5711691481236.2810261-CDS-H-paniculata_contig43140:361..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43140 362..571 +
1622930310.8131032-CDS-H-paniculata_contig43140:949..11861622930310.8131032-CDS-H-paniculata_contig43140:949..1186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43140 950..1186 +
1691481236.291912-CDS-H-paniculata_contig43140:949..11861691481236.291912-CDS-H-paniculata_contig43140:949..1186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43140 950..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43140.11013.1prot_H-paniculata_contig43140.11013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43140 362..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43140.11013.1

>prot_H-paniculata_contig43140.11013.1 ID=prot_H-paniculata_contig43140.11013.1|Name=mRNA_H-paniculata_contig43140.11013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
GLEGSIEQAPTGTVSARIFSRVFCASWVAKPSLPLELAPGEVQGFVLDLS
PDPTVEGLLPRRSGGLLETPVTFVWILDDASNADGANGGGGGKSAPRPLR
AGRPLTTSVHLAQWRAEERASDEVLVRVRGQPRVLVNRVFEVCTEGDNM
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mRNA from alignment at H-paniculata_contig43140:362..1186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43140.11013.1 ID=mRNA_H-paniculata_contig43140.11013.1|Name=mRNA_H-paniculata_contig43140.11013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig43140:362..1186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTAGAAGGGTCGATAGAGCAGGCACCCACGGGGACTGTAAGTGCAAG
AATTTTTTCGCGCGTTTTTTGCGCGTCTTGGGTGGCCAAGCCGTCTCTCC
CGCTCGAGCTAGCACCAGGAGAGGTGCAGGGGTTTGTGCTGGATCTGTCC
CCTGATCCAACAGTGGAGGGGTTGTTGCCGCGGCGCTCGGGTGGTCTCTT
GGAGACTCCGGTAAGTTTTTGGGTGGAGCGGAGCAGCGTTGCGTTTTTTT
TTTTCCGGGTGGGGGGCGGCGGGGGGGGGGGGTTGTAAAGGTGTGTGTAC
GCACCCGCCAGGTTTTCGTTGGTAGTACCAGGTGGATCATATGTATGTAT
GTACGTGTATGTGTGTATGTGTGTGTACAGGTTGTCAAGCAATCTTGTGT
ATATGTATTATCCTCGTCGTGCTGATGGTGTCGCTGTCGCTGTTGCTATG
GTCCTAACCCGTGAACATGACCACGAATCATCCCGCCGGACGAACTCCGT
TCACCGTCCCTCGCCCTGCCCTCGCTCTCCAAAACAACGATAACGATAAC
GATCTTGGATTTTATTCACTGTGCGGTGACAATAAAAGGTGACATTCGTC
TGGATCCTCGATGACGCAAGCAACGCTGACGGCGCTAATGGCGGCGGCGG
TGGGAAGTCGGCCCCGCGGCCTCTTCGAGCCGGCAGACCCTTGACTACCT
CGGTGCACCTGGCGCAGTGGCGCGCGGAGGAACGCGCGAGCGACGAGGTG
CTGGTGAGGGTGCGAGGGCAGCCAAGAGTGCTTGTCAACCGGGTCTTCGA
GGTATGTACAGAAGGCGACAACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig43140:362..1186+

>mRNA_H-paniculata_contig43140.11013.1 ID=mRNA_H-paniculata_contig43140.11013.1|Name=mRNA_H-paniculata_contig43140.11013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig43140:362..1186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTAGAAGGGTCGATAGAGCAGGCACCCACGGGGACTGTAAGTGCAAG
AATTTTTTCGCGCGTTTTTTGCGCGTCTTGGGTGGCCAAGCCGTCTCTCC
CGCTCGAGCTAGCACCAGGAGAGGTGCAGGGGTTTGTGCTGGATCTGTCC
CCTGATCCAACAGTGGAGGGGTTGTTGCCGCGGCGCTCGGGTGGTCTCTT
GGAGACTCCGGGGCTAGAAGGGTCGATAGAGCAGGCACCCACGGGGACTG
TAAGTGCAAGAATTTTTTCGCGCGTTTTTTGCGCGTCTTGGGTGGCCAAG
CCGTCTCTCCCGCTCGAGCTAGCACCAGGAGAGGTGCAGGGGTTTGTGCT
GGATCTGTCCCCTGATCCAACAGTGGAGGGGTTGTTGCCGCGGCGCTCGG
GTGGTCTCTTGGAGACTCCGGTGACATTCGTCTGGATCCTCGATGACGCA
AGCAACGCTGACGGCGCTAATGGCGGCGGCGGTGGGAAGTCGGCCCCGCG
GCCTCTTCGAGCCGGCAGACCCTTGACTACCTCGGTGCACCTGGCGCAGT
GGCGCGCGGAGGAACGCGCGAGCGACGAGGTGCTGGTGAGGGTGCGAGGG
CAGCCAAGAGTGCTTGTCAACCGGGTCTTCGAGGTATGTACAGAAGGCGA
CAACATGGTGACATTCGTCTGGATCCTCGATGACGCAAGCAACGCTGACG
GCGCTAATGGCGGCGGCGGTGGGAAGTCGGCCCCGCGGCCTCTTCGAGCC
GGCAGACCCTTGACTACCTCGGTGCACCTGGCGCAGTGGCGCGCGGAGGA
ACGCGCGAGCGACGAGGTGCTGGTGAGGGTGCGAGGGCAGCCAAGAGTGC
TTGTCAACCGGGTCTTCGAGGTATGTACAGAAGGCGACAACATG
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