mRNA_H-paniculata_contig1172.1101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1172.1101.1
Unique NamemRNA_H-paniculata_contig1172.1101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1172.1101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1172contigH-paniculata_contig1172:7173..9768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size252
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1172.1101.1prot_H-paniculata_contig1172.1101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1172 7281..9768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.6342144-UTR-H-paniculata_contig1172:7172..72801622928880.6342144-UTR-H-paniculata_contig1172:7172..7280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1172 7173..7280 -
1691480655.1257436-UTR-H-paniculata_contig1172:7172..72801691480655.1257436-UTR-H-paniculata_contig1172:7172..7280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1172 7173..7280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.9675462-CDS-H-paniculata_contig1172:7280..73611622928880.9675462-CDS-H-paniculata_contig1172:7280..7361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 7281..7361 -
1691480655.1353488-CDS-H-paniculata_contig1172:7280..73611691480655.1353488-CDS-H-paniculata_contig1172:7280..7361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 7281..7361 -
1622928881.1733482-CDS-H-paniculata_contig1172:9705..97681622928881.1733482-CDS-H-paniculata_contig1172:9705..9768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 9706..9768 -
1691480655.1432695-CDS-H-paniculata_contig1172:9705..97681691480655.1432695-CDS-H-paniculata_contig1172:9705..9768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 9706..9768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1172.1101.1

>prot_H-paniculata_contig1172.1101.1 ID=prot_H-paniculata_contig1172.1101.1|Name=mRNA_H-paniculata_contig1172.1101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
PGLSESPVLWSALAKSWREETNGGCTVQNVDTSTSRKPKQLSFLFSL*
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mRNA from alignment at H-paniculata_contig1172:7173..9768-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1172.1101.1 ID=mRNA_H-paniculata_contig1172.1101.1|Name=mRNA_H-paniculata_contig1172.1101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2596bp|location=Sequence derived from alignment at H-paniculata_contig1172:7173..9768- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGATTGTCCGAGAGCCCGGTGTTGTGGAGCGCGCTAGCGAAGTCCTG
GCGAGAAGAAACCGTGAGCGCAAAGTAAACGTACGACAGAAGATTTATGT
GGAACCTCTTGCCGCGACGGCAATAACGTATATAAGGAGAGGACTGGGCC
ACGATTATCCGCACAGCACGTTACTGTGTTGTGATGTCTGTACTAACCCT
TCACTGCTGACTGTTGTACCGAACTTGCAGACCTAATGTATTGTAAAGTA
TACAACAGTACACGCATTCAGTCAGCGCCGTCCAGTACAAAAAATGTTGT
TCCTTGTCCGTAACGTTCCTACTGGCTGTATTCATTGACTATTATAGCAT
GTGACATGTAGTGCATTGCACGCTTTCTACTCAAATTAGTAGACTGCATT
AGAGAGACAGTTAATGAACATCTTGAATTTGTGCGAACCGTATATAACCC
AACTGCCACAGTACAGTCAGTCAATGGAAACGCCATCGCAGAAGTGCGGT
CACGTATATAGGAACCACGGTATGGCGACATGCAAACAGCAATTACTTGG
CCACTACTGTGACCACGTGCAGCCAAATGTGTCGTGACCGCCCCACATAC
TCAACGGTCCGCAATCATGAGACCCAAATGCTTGCATGAAGCAGAATTGT
TCCGATTCTGAAATACGGCCCAATTTTGAATCCCCCAGATTTTGGGGTTC
ATGACTTGTTCATACTTTTATTATAGCACTTTTAATTAGGAGATGGTGTA
ATACATAATTGGGCGAATCTGAATTGTTCCGACTCTGAATATCGCCCAAT
TTCAAGTGCGGCAGAGGAACCGACGGCTTCTTGTCCAGAACTTATGACTT
TTCAGTCGGCGCGATCAATTGTCCATATCCGTGTCCCGTAGCACGGAAAC
TATGCTGTGCGAAATAAACAGCTAACGTCTTTTCAAAACGTGGGCATTTT
CCCGCTTTTTTTCTTCTTTCCTTTCTTTCCCCTTCCAACACGTGAGATTA
TGTGGCAAGAATCGAAAAACTTGAGATAATGTCATGGAACACCGTAGGCA
AATACACAATTTTTCGTTGCTGAAATGTCGGAATAGTGGAAAAGGGAAAC
AAAACAAAACAAAAAACGAGGAAAGAGAAAAAAACACGAAAGAGGGGGGG
ACGAAATCGTAAAACACAAACGCTTAGAATGATGGTGAGTAGTACGGAAT
CGCAGTTTTGTCCCCTTTCTGGGGATACCGTATGTTTCGGTGTATGTACC
ATGTGTGTGGAGAAATCGACGATCCAGCAACATAGCATACTATTTGTACT
GATCTGTATTGGCTGCCCTCTCTCCTGATGGGCTATTTCTGTAAATACAT
CCCCGTCCCCCGTCCCCCGTCCTGCACGTCTCAGTTACAAGTCAAACAAA
ATACCGACGCAACACATATTTTGATGGCATTATGTATGGTTATTACACGA
ATGGTCCCATAGAGGGAAGGTGATCTCGTAGGTTACAATCCAATTTCATA
GGGGGGGGGAGTGATGTTCCGCGTATACCCCGGTAATACATCAGAATCTC
ACAAACGTGTCCAAAACGTATTTACCCCCCTCAGGGTGGTCCGGGGGGGA
AAGGGGGGGCGCGTTCTCCGGCAGGGGTGTCAAACTCTGTAACCTTCGAT
AGAGCATAATAGAGTACAGCACCATCCTGCAGCGTGACAGCTACCCATGT
GGTGCAACTGCGAGCGATTAACAGCTAGGACTTTATTGGGGTGCCGATCA
CAGTGGAATATTGGGGTGCACTGGGTTGTTCGTGTGCAGGGAGAGTGCTA
TAAAGTAAATATTATAATACGTAATATCTGTACAGCCATGTCTGCGTCCA
TGCAGTGCGTTTAGTTTGATCGGTTTTACTAGTTTAATCAGTTATACTCC
ATGACCCACGCACAGCGACTTGGTGCGCTCGCATACAGGTATAATGTCCG
TGTAGATTTGATCATAATAAGTTACTTGGGTAAAGAATTGAATACTGTTC
CTAAAATGCCATCGTCGCCACCCTCAGCGTATTCACCCTATGGGTGTCCC
TGTCGACACAACGACTTACTGAGGAAACAGGGGGCGAAGGCATGCCCATG
ACATGATTGCGGGGATAGGGAAGCCGCCGTTAGTCAAACAGCTGATCCAG
TGCAGACGGAGAGTTGATGTGGTTCTGTGCAAAATGGTCTGTTTATACAT
ACAAGGGTTCGATCGGCGTTCACAGTCAAAATCATCTTTCATTCCGAAAT
AGCCCCCGCCGCTGGAATTGTTTAAATACAGAGAAGTCTTTCTTGCAATC
CCGGTACCTGCGGTACGCCTTCTCGACCCCTCCCGCCACTTTGGGTTCAC
GATGTAATCTTGAGATATTCTTCTCTCGCACCTGTCCCTTTGATCATTTT
TCACCAGAACGGCGGGTGCACGGTGCAAAACGTCGACACAAGCACAAGCA
GGAAACCTAAGCAGCTGAGTTTCCTTTTTTCCCTGTGAGGGCAACTTTCC
GAGCGTCCGACTGAACTGGCCGTTGGTGTTTGGGTTCCGGAGCAGAGGGG
ATCGCCTCCCCCCCTTCCCCCGCCCCTCCAAGATGTCACAAGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1172:7173..9768-

>mRNA_H-paniculata_contig1172.1101.1 ID=mRNA_H-paniculata_contig1172.1101.1|Name=mRNA_H-paniculata_contig1172.1101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig1172:7173..9768- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGATTGTCCGAGAGCCCGGTGTTGTGGAGCGCGCTAGCGAAGTCCTG
GCGAGAAGAAACCCCAGGATTGTCCGAGAGCCCGGTGTTGTGGAGCGCGC
TAGCGAAGTCCTGGCGAGAAGAAACCAACGGCGGGTGCACGGTGCAAAAC
GTCGACACAAGCACAAGCAGGAAACCTAAGCAGCTGAGTTTCCTTTTTTC
CCTGTGAAACGGCGGGTGCACGGTGCAAAACGTCGACACAAGCACAAGCA
GGAAACCTAAGCAGCTGAGTTTCCTTTTTTCCCTGTGA
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