mRNA_H-paniculata_contig43118.11008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43118.11008.1
Unique NamemRNA_H-paniculata_contig43118.11008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A1X7TQ29_AMPQE (gag_pre-integrs domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TQ29_AMPQE)

HSP 1 Score: 79.3 bits (194), Expect = 1.710e-15
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   28 NEKRQQMVDIKLLHERLGHV-----RELLTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            NEKR+    I + H RL HV     REL + A    I  +G    C AC +GK  + P +  +E R+T+P +L+H+D+ GP+  +  GG R+ I F+DD+ R C+ Y +R KSE L
Sbjct:  122 NEKRES-TSIDVWHRRLAHVNIRQLRELCSSADGINIPSNGDRSFCEACIEGKMHRLPHRPLKEIRSTQPPQLIHSDVCGPMQTRSLGGSRYFITFIDDFFRYCRSYFMRHKSEAL 236          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 2.120e-15
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   49 VDIKLLHERLGHVRELLTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            V   L H+RLGH  +L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +  GG ++ + F+DD+SR CKVY ++ KSE L
Sbjct:   52 VTASLWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVL 158          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A6D2KNF9_9BRAS (gag_pre-integrs domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KNF9_9BRAS)

HSP 1 Score: 77.4 bits (189), Expect = 2.440e-15
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   28 NEKRQQMVDIKLLHERLGHVRELLTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSE 351
            N  +QQ ++I   H+RLGHVR       Q    + G         VC AC  GK S++   K  + +T   LE+VHTD+ GP+  K+  G R+ ++F+DDY+ MC VY LRQKSE
Sbjct:   23 NASKQQEMEI--WHKRLGHVRNGRLQQMQDKYLVKGLPKFQVTKEVCEACNLGKQSRKSFPKKSQTKTQAKLEIVHTDLCGPMQHKYLEGSRYFLLFLDDYTDMCWVYFLRQKSE 135          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 80.1 bits (196), Expect = 4.530e-15
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   67 HERLGHVRE--LLTVARQQ---GIRLSG-KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            H RLGH+ E  LL + R +   G+++   KL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+     GG ++ + F+DDYS+ C++Y L+ ++E L
Sbjct:  612 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFIDDYSQWCEIYFLKNRNEVL 715          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 8.280e-15
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   61 LLHERLGHVR--------ELLTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            L H+R GH+         E+      +GI+   K GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV+ +  GG R+AI F DDY+R   VY ++ KS+ L
Sbjct:    3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSL 107          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-14
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   49 VDIKLLHERLGHVRELLTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            V   L H+RLGH  +L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +  GG ++ + F+DD+SR CKVY ++ KSE L
Sbjct:  423 VTASLWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVL 529          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A6S7FZB6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FZB6_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-14
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   55 IKLLHERLGHV----------RELLTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            + L H+R+ H+          +EL+T     G   +GKL VC  C +GKA + P K   E ++T  LELVH+D+AGP+  + FGG ++ + F+DDYSR   VY ++ KSE L
Sbjct:  398 LDLWHQRMAHLNAGQMKIMASKELITGTDIPG---TGKLSVCEPCAEGKAHRAPFKPAGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVL 506          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-14
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   67 HERLGHVRELLTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKFFGGCRFAIIFVDDYSRMCKVYTLRQKS 348
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  +  R   PLEL+HTD+ GP+ ++  GG ++ I F+DDYSRMC VY LR KS
Sbjct:  375 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKS 475          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-14
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   67 HERLGHVRELLTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKFFGGCRFAIIFVDDYSRMCKVYTLRQKS 348
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  +  R   PLEL+HTD+ GP+ ++  GG ++ I F+DDYSRMC VY LR KS
Sbjct:   67 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKS 167          
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Match: A0A0V1NJF3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NJF3_9BILA)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-14
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   67 HERLGHVRE--LLTVARQQ---GIRLSG-KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKFFGGCRFAIIFVDDYSRMCKVYTLRQKSEEL 357
            H RLGH+ E  LL + R +   G+++   KL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+     GG ++ + F+DD+SR C+ Y L+ ++E L
Sbjct:  382 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFIDDHSRWCETYFLKNQNEVL 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43118.11008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7TQ29_AMPQE1.710e-1539.66gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A0S7KIZ2_9TELE2.120e-1539.25POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6D2KNF9_9BRAS2.440e-1540.87gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A0V0T740_9BILA4.530e-1541.35Retrovirus-related Pol polyprotein from transposon... [more]
K8YS61_NANGC8.280e-1541.67Retrovirus-related pol polyprotein from transposon... [more]
A0A0S7KIW8_9TELE1.080e-1439.25POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6S7FZB6_PARCT1.090e-1440.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y1REW6_PRUDU2.080e-1442.57Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU2.080e-1442.57BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A0V1NJF3_9BILA2.080e-1441.35Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43118contigH-paniculata_contig43118:991..1350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.5
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog225117.XP_009362851.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.2473912-CDS-H-paniculata_contig43118:990..13501622930310.2473912-CDS-H-paniculata_contig43118:990..1350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43118 991..1350 +
1691481236.0152724-CDS-H-paniculata_contig43118:990..13501691481236.0152724-CDS-H-paniculata_contig43118:990..1350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43118 991..1350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43118.11008.1prot_H-paniculata_contig43118.11008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43118 991..1350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43118.11008.1

>prot_H-paniculata_contig43118.11008.1 ID=prot_H-paniculata_contig43118.11008.1|Name=mRNA_H-paniculata_contig43118.11008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
NNDCTTPKNNEKRQQMVDIKLLHERLGHVRELLTVARQQGIRLSGKLGVC
SACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVDKFFGGCRFAIIFV
DDYSRMCKVYTLRQKSEEL*
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mRNA from alignment at H-paniculata_contig43118:991..1350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43118.11008.1 ID=mRNA_H-paniculata_contig43118.11008.1|Name=mRNA_H-paniculata_contig43118.11008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig43118:991..1350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAACGACTGTACCACCCCGAAGAACAATGAGAAGAGGCAACAGATGGT GGACATCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGAACTTCTCA CAGTCGCGCGGCAACAAGGCATAAGATTAAGCGGGAAGCTCGGTGTCTGC TCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCGGTAAAAAAGTATCG AGAAGAGCGAACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCG GACCGGTGGACAAGTTCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTC GACGACTACAGCAGAATGTGCAAAGTCTATACCTTGCGACAAAAGTCGGA GGAGCTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig43118:991..1350+

>mRNA_H-paniculata_contig43118.11008.1 ID=mRNA_H-paniculata_contig43118.11008.1|Name=mRNA_H-paniculata_contig43118.11008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig43118:991..1350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAACGACTGTACCACCCCGAAGAACAATGAGAAGAGGCAACAGATGGT
GGACATCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGAACTTCTCA
CAGTCGCGCGGCAACAAGGCATAAGATTAAGCGGGAAGCTCGGTGTCTGC
TCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCGGTAAAAAAGTATCG
AGAAGAGCGAACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCG
GACCGGTGGACAAGTTCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTC
GACGACTACAGCAGAATGTGCAAAGTCTATACCTTGCGACAAAAGTCGGA
GGAGCTATGAAACAACGACTGTACCACCCCGAAGAACAATGAGAAGAGGC
AACAGATGGTGGACATCAAGTTACTACACGAGCGACTTGGGCATGTTCGA
GAACTTCTCACAGTCGCGCGGCAACAAGGCATAAGATTAAGCGGGAAGCT
CGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCGGTAA
AAAAGTATCGAGAAGAGCGAACGACCGAGCCGTTGGAGCTGGTGCACACC
GACATAGCCGGACCGGTGGACAAGTTCTTCGGAGGATGTCGCTTCGCCAT
CATCTTCGTCGACGACTACAGCAGAATGTGCAAAGTCTATACCTTGCGAC
AAAAGTCGGAGGAGCTATGA
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