mRNA_H-paniculata_contig4310.11005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4310.11005.1
Unique NamemRNA_H-paniculata_contig4310.11005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4310.11005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4310contigH-paniculata_contig4310:14906..15259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4310.11005.1prot_H-paniculata_contig4310.11005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4310 14921..15253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930309.845883-UTR-H-paniculata_contig4310:14905..149201622930309.845883-UTR-H-paniculata_contig4310:14905..14920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4310 14906..14920 +
1691481235.8608737-UTR-H-paniculata_contig4310:14905..149201691481235.8608737-UTR-H-paniculata_contig4310:14905..14920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4310 14906..14920 +
1622930309.878386-UTR-H-paniculata_contig4310:15253..152591622930309.878386-UTR-H-paniculata_contig4310:15253..15259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4310 15254..15259 +
1691481235.8812854-UTR-H-paniculata_contig4310:15253..152591691481235.8812854-UTR-H-paniculata_contig4310:15253..15259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4310 15254..15259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930309.8626592-CDS-H-paniculata_contig4310:14920..152531622930309.8626592-CDS-H-paniculata_contig4310:14920..15253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4310 14921..15253 +
1691481235.8719273-CDS-H-paniculata_contig4310:14920..152531691481235.8719273-CDS-H-paniculata_contig4310:14920..15253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4310 14921..15253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4310.11005.1

>prot_H-paniculata_contig4310.11005.1 ID=prot_H-paniculata_contig4310.11005.1|Name=mRNA_H-paniculata_contig4310.11005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MPSICTADMGGFESTLRSGIFCKQHLEIGFYRILHSERVELDQSDAWFVL
VVCEIAQAVFVDLICFQSMGLQLERWLAWAHRSLPGELPCPLQKCGCSVG
ASCSARKALP*
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mRNA from alignment at H-paniculata_contig4310:14906..15259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4310.11005.1 ID=mRNA_H-paniculata_contig4310.11005.1|Name=mRNA_H-paniculata_contig4310.11005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig4310:14906..15259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATCTTACACCGCATGCCGAGTATTTGCACTGCTGATATGGGGGGATT
TGAATCGACATTAAGGAGTGGAATCTTCTGCAAACAACACTTGGAAATCG
GCTTCTATAGGATCTTGCATTCTGAGAGAGTTGAGCTTGATCAAAGCGAT
GCCTGGTTTGTTTTAGTCGTGTGCGAGATAGCACAAGCTGTGTTTGTGGA
CTTGATTTGTTTCCAGTCAATGGGGTTGCAGTTGGAGCGCTGGCTCGCCT
GGGCGCACCGGAGTCTTCCGGGAGAACTCCCTTGCCCATTACAAAAGTGT
GGCTGTTCCGTAGGAGCTAGCTGCAGTGCGCGGAAAGCCTTGCCATAATG
CTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4310:14906..15259+

>mRNA_H-paniculata_contig4310.11005.1 ID=mRNA_H-paniculata_contig4310.11005.1|Name=mRNA_H-paniculata_contig4310.11005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4310:14906..15259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAGTATTTGCACTGCTGATATGGGGGGATTTGAATCGACATTAAG
GAGTGGAATCTTCTGCAAACAACACTTGGAAATCGGCTTCTATAGGATCT
TGCATTCTGAGAGAGTTGAGCTTGATCAAAGCGATGCCTGGTTTGTTTTA
GTCGTGTGCGAGATAGCACAAGCTGTGTTTGTGGACTTGATTTGTTTCCA
GTCAATGGGGTTGCAGTTGGAGCGCTGGCTCGCCTGGGCGCACCGGAGTC
TTCCGGGAGAACTCCCTTGCCCATTACAAAAGTGTGGCTGTTCCGTAGGA
GCTAGCTGCAGTGCGCGGAAAGCCTTGCCATAAATGCCGAGTATTTGCAC
TGCTGATATGGGGGGATTTGAATCGACATTAAGGAGTGGAATCTTCTGCA
AACAACACTTGGAAATCGGCTTCTATAGGATCTTGCATTCTGAGAGAGTT
GAGCTTGATCAAAGCGATGCCTGGTTTGTTTTAGTCGTGTGCGAGATAGC
ACAAGCTGTGTTTGTGGACTTGATTTGTTTCCAGTCAATGGGGTTGCAGT
TGGAGCGCTGGCTCGCCTGGGCGCACCGGAGTCTTCCGGGAGAACTCCCT
TGCCCATTACAAAAGTGTGGCTGTTCCGTAGGAGCTAGCTGCAGTGCGCG
GAAAGCCTTGCCATAA
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