prot_H-paniculata_contig431.11001.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig431.11001.1
Unique Nameprot_H-paniculata_contig431.11001.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length393
Homology
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BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: A0A6H5LEV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEV5_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.780e-69
Identity = 117/203 (57.64%), Postives = 133/203 (65.52%), Query Frame = 0 
Query:    3 CSAHKRPGMQYLPALAEHHRGGAGAALTQAMGHVPKGLDHQPSANHPVTKKYAANHGGGPGAVAYHGDHNSIPLGGDQKHCHEEGCTKAPSYGWASASGAETSVAIMCAKHKRPAMVYLRHPSNDPP-GHGKGKTYASEDKNHVPRGLEYIPSVTAESDRVVHSDHPHCHHHGCTKAPSYGLEGKTGAYCFSHKRPGMVFLKR 204
            CSAHKRPG +YL   AEHHRGGAG ALT AMGHVPKGLD++    H   +K+  +H              +   G D KHC E GC +APSYGW  A       A+MCA HK+PAMVYLRHPS+    G        + DK HVP+GLEYIPSVT +SDRVVHS +PHC   GCTKAPSYG EG+ G YCFSHKRPG VFLKR
Sbjct:   27 CSAHKRPGQEYLAGKAEHHRGGAGDALTLAMGHVPKGLDYR----HTADRKHDPHH-------------TARAAGDDGKHCQETGCMRAPSYGWEGA-------AVMCALHKKPAMVYLRHPSDSSSSGKDSANVKPTADKGHVPKGLEYIPSVTMDSDRVVHSGNPHCAVKGCTKAPSYGTEGEGGVYCFSHKRPGQVFLKR 205
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BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.480e-34
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:  272 VKADLVAARRCIALARERLEDTTIGVKYLTNIARHPQELKYRTLKMSNRKFYTEVWLNSGMRGLFLALGFRAGEDGTVVLNPLLPETRDCIATLVQEL 369
            V+ADL   +RC+AL+R + ED+T+GVKYL N+  HP ++KYRTLK+SN+KFYTEVWLNSGMRGLFLALGFR    G V L+PL P T DC+A  +Q L
Sbjct:   25 VEADLAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAPNTLDCVAVALQGL 122
[Close]
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.820e-20
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0 
Query:  281 RCIALARERLEDTTIGVKYLTNIARHPQELKYRTLKMSNRKFYTEVWLNSGMRGLFLALGFRAGEDGTVVLNPLLPETRDCIATLVQEL 369
            RC+AL+    ED T  VKYL NIA+HPQE KYR LK  N +F  EVWLN G+RG+F A+GFR  + G V L  +  ET   +  L+QEL
Sbjct:   12 RCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LEV5_9PHAE2.780e-6957.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ99_ECTSI1.480e-3463.27PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA1_9STRA2.820e-2052.81PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018997PUB domainPFAMPF09409PUBcoord: 298..351
e-value: 3.0E-12
score: 46.3
NoneNo IPR availableGENE3D1.20.58.2190coord: 279..365
e-value: 2.3E-12
score: 48.3
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 297..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig431contigH-paniculata_contig431:1677..13119 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig431.11001.1mRNA_H-paniculata_contig431.11001.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig431 1642..14260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig431.11001.1 ID=prot_H-paniculata_contig431.11001.1|Name=mRNA_H-paniculata_contig431.11001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
MFCSAHKRPGMQYLPALAEHHRGGAGAALTQAMGHVPKGLDHQPSANHPV
TKKYAANHGGGPGAVAYHGDHNSIPLGGDQKHCHEEGCTKAPSYGWASAS
GAETSVAIMCAKHKRPAMVYLRHPSNDPPGHGKGKTYASEDKNHVPRGLE
YIPSVTAESDRVVHSDHPHCHHHGCTKAPSYGLEGKTGAYCFSHKRPGMV
FLKRSASIPNNRPLQPRAQAAEAEDQKIGGDASSAQQQTSMTSSSHELDG
GGPTVSSFATPAAQCHTTGEVVKADLVAARRCIALARERLEDTTIGVKYL
TNIARHPQELKYRTLKMSNRKFYTEVWLNSGMRGLFLALGFRAGEDGTVV
LNPLLPETRDCIATLVQELTCTQGTNAARSGASSAFGYAPVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR036339PUB-like_dom_sf