mRNA_H-paniculata_contig431.11001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: A0A6H5LEV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEV5_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.410e-72 Identity = 126/216 (58.33%), Postives = 143/216 (66.20%), Query Frame = 3
Query: 3 APSFGFPGGERMFCSAHKRPGMQYLPALAEHHRGGAGAALTQAMGHVPKGLDHQPSANHPVTKKYAANHGGGPGAVAYHGDHNSIPLGGDQKHCHEEGCTKAPSYGWASASGAETSVAIMCAKHKRPAMVYLRHPSNDPP-GHGKGKTYASEDKNHVPRGLEYIPSVTAESDRVVHSDHPHCHHHGCTKAPSYGLEGKTGAYCFSHKRPGMVFLKR 647
APSFGFP ER+ CSAHKRPG +YL AEHHRGGAG ALT AMGHVPKGLD++ H +K+ +H + G D KHC E GC +APSYGW A A+MCA HK+PAMVYLRHPS+ G + DK HVP+GLEYIPSVT +SDRVVHS +PHC GCTKAPSYG EG+ G YCFSHKRPG VFLKR
Sbjct: 14 APSFGFPNEERVSCSAHKRPGQEYLAGKAEHHRGGAGDALTLAMGHVPKGLDYR----HTADRKHDPHH-------------TARAAGDDGKHCQETGCMRAPSYGWEGA-------AVMCALHKKPAMVYLRHPSDSSSSGKDSANVKPTADKGHVPKGLEYIPSVTMDSDRVVHSGNPHCAVKGCTKAPSYGTEGEGGVYCFSHKRPGQVFLKR 205
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI) HSP 1 Score: 133 bits (335), Expect = 5.680e-33 Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 3
Query: 849 VKADLVAARRCIALARERLEDTTIGVKYLTNIARHPQELKYRTLKMSNRKFYTEVWLNSGMRGLFLALGFRAGEDGTVVLNPLLPETRDCIATLVQEL 1142
V+ADL +RC+AL+R + ED+T+GVKYL N+ HP ++KYRTLK+SN+KFYTEVWLNSGMRGLFLALGFR G V L+PL P T DC+A +Q L
Sbjct: 25 VEADLAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAPNTLDCVAVALQGL 122
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.190e-19 Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 3
Query: 876 RCIALARERLEDTTIGVKYLTNIARHPQELKYRTLKMSNRKFYTEVWLNSGMRGLFLALGFRAGEDGTVVLNPLLPETRDCIATLVQEL 1142
RC+AL+ ED T VKYL NIA+HPQE KYR LK N +F EVWLN G+RG+F A+GFR + G V L + ET + L+QEL
Sbjct: 12 RCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig431.11001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig431.11001.1 >prot_H-paniculata_contig431.11001.1 ID=prot_H-paniculata_contig431.11001.1|Name=mRNA_H-paniculata_contig431.11001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp MFCSAHKRPGMQYLPALAEHHRGGAGAALTQAMGHVPKGLDHQPSANHPVback to top mRNA from alignment at H-paniculata_contig431:1642..14260+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig431.11001.1 ID=mRNA_H-paniculata_contig431.11001.1|Name=mRNA_H-paniculata_contig431.11001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12619bp|location=Sequence derived from alignment at H-paniculata_contig431:1642..14260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig431:1642..14260+ >mRNA_H-paniculata_contig431.11001.1 ID=mRNA_H-paniculata_contig431.11001.1|Name=mRNA_H-paniculata_contig431.11001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig431:1642..14260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |