mRNA_H-paniculata_contig4308.10997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4308.10997.1
Unique NamemRNA_H-paniculata_contig4308.10997.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4308.10997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4308contigH-paniculata_contig4308:11717..12842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1126
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4308.10997.1prot_H-paniculata_contig4308.10997.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4308 12012..12620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.714756-UTR-H-paniculata_contig4308:11716..120111622930308.714756-UTR-H-paniculata_contig4308:11716..12011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4308 11717..12011 +
1691481235.3838787-UTR-H-paniculata_contig4308:11716..120111691481235.3838787-UTR-H-paniculata_contig4308:11716..12011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4308 11717..12011 +
1622930308.749572-UTR-H-paniculata_contig4308:12620..128421622930308.749572-UTR-H-paniculata_contig4308:12620..12842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4308 12621..12842 +
1691481235.416666-UTR-H-paniculata_contig4308:12620..128421691481235.416666-UTR-H-paniculata_contig4308:12620..12842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4308 12621..12842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.7321877-CDS-H-paniculata_contig4308:12011..126201622930308.7321877-CDS-H-paniculata_contig4308:12011..12620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4308 12012..12620 +
1691481235.407112-CDS-H-paniculata_contig4308:12011..126201691481235.407112-CDS-H-paniculata_contig4308:12011..12620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4308 12012..12620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4308.10997.1

>prot_H-paniculata_contig4308.10997.1 ID=prot_H-paniculata_contig4308.10997.1|Name=mRNA_H-paniculata_contig4308.10997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MDLPSLSVVSLRLMKATGEPSSRRELKQRRRDYYHQWAMVSAQNEEQNKR
QTLSDKTREKMLICMESILASLSAIAVTVREQIVLDKRRWTIMQLELNVK
SSREEVELLREVGPPDAAEEAVNGLRDALKALRAAVKPAQLTTVRSWRER
SGADGAGDDEPTGDGAAASGDNGHGHERGESVEGHHENAAFSGEDDSIIT
VI*
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mRNA from alignment at H-paniculata_contig4308:11717..12842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4308.10997.1 ID=mRNA_H-paniculata_contig4308.10997.1|Name=mRNA_H-paniculata_contig4308.10997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-paniculata_contig4308:11717..12842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGGTGGTCAGAACACGAGGGGGCGGGAGGATCAACCGCTGCCGCT
GCACAGGCTGCTCTTTGTGATGATGTCATCGTGGTAATGCCTCCCATGCC
GAAGAACTGGCTGCCTCCCACTATACTTGTTTTTTGTTTATTCGGCAGGG
TAAGTAATATTCAGGATGCAGAATTTAGCCAAGCAGCTGCATGTGGTCCT
GACGGTAGGAAGCGGAGGCGAGAGAGGAGGCGGACACCGAATACGATGGA
GATGCGAGCTCAAGTACGCCTGCGGCAGGAAACTCCACGTCAGGGATGGA
CTTACCGAGTTTGTCGGTAGTGTCACTACGCCTGATGAAGGCCACAGGTG
AGCCTTCAAGCAGACGGGAATTGAAGCAACGTCGACGGGATTACTACCAC
CAGTGGGCGATGGTATCTGCGCAGAATGAAGAGCAGAATAAGCGGCAGAC
ACTATCGGACAAAACACGCGAGAAGATGCTGATTTGCATGGAGAGTATCT
TGGCCAGCCTAAGTGCAATAGCTGTGACGGTACGGGAGCAAATTGTTCTT
GACAAAAGAAGATGGACAATTATGCAATTGGAACTCAACGTCAAATCCAG
CCGGGAAGAAGTCGAGTTATTGCGGGAAGTAGGCCCACCCGACGCCGCTG
AAGAGGCTGTCAACGGCCTACGAGACGCACTGAAGGCACTCCGCGCAGCG
GTGAAGCCTGCTCAGCTGACTACTGTACGAAGCTGGCGTGAAAGATCGGG
GGCAGATGGTGCCGGCGATGACGAGCCTACAGGCGACGGAGCGGCGGCGT
CTGGGGACAATGGCCATGGACATGAAAGGGGTGAATCAGTTGAAGGGCAC
CACGAAAACGCAGCCTTTTCTGGCGAAGATGATAGCATCATAACTGTCAT
TTGAGTGTGCGATATGATGTCCATCAATACTGGAGGTGACTCAAATGCTT
CTTATTTGGGGGAGGTGCAAAGGGGGTGTCAATACGTTGATTGTAGCCAT
GGTTTCTCGATTGATAATGGTTGTGGCAGAGCATACACTTCTTGGTGTGC
TTAGTTTTGTGTTGGTTATGACTATTTCTCTGCATATTTTTTTTCCGGGC
GAACAATACCGCCGATTACGGCAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4308:11717..12842+

>mRNA_H-paniculata_contig4308.10997.1 ID=mRNA_H-paniculata_contig4308.10997.1|Name=mRNA_H-paniculata_contig4308.10997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig4308:11717..12842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTACCGAGTTTGTCGGTAGTGTCACTACGCCTGATGAAGGCCAC
AGGTGAGCCTTCAAGCAGACGGGAATTGAAGCAACGTCGACGGGATTACT
ACCACCAGTGGGCGATGGTATCTGCGCAGAATGAAGAGCAGAATAAGCGG
CAGACACTATCGGACAAAACACGCGAGAAGATGCTGATTTGCATGGAGAG
TATCTTGGCCAGCCTAAGTGCAATAGCTGTGACGGTACGGGAGCAAATTG
TTCTTGACAAAAGAAGATGGACAATTATGCAATTGGAACTCAACGTCAAA
TCCAGCCGGGAAGAAGTCGAGTTATTGCGGGAAGTAGGCCCACCCGACGC
CGCTGAAGAGGCTGTCAACGGCCTACGAGACGCACTGAAGGCACTCCGCG
CAGCGGTGAAGCCTGCTCAGCTGACTACTGTACGAAGCTGGCGTGAAAGA
TCGGGGGCAGATGGTGCCGGCGATGACGAGCCTACAGGCGACGGAGCGGC
GGCGTCTGGGGACAATGGCCATGGACATGAAAGGGGTGAATCAGTTGAAG
GGCACCACGAAAACGCAGCCTTTTCTGGCGAAGATGATAGCATCATAACT
GTCATTTGAATGGACTTACCGAGTTTGTCGGTAGTGTCACTACGCCTGAT
GAAGGCCACAGGTGAGCCTTCAAGCAGACGGGAATTGAAGCAACGTCGAC
GGGATTACTACCACCAGTGGGCGATGGTATCTGCGCAGAATGAAGAGCAG
AATAAGCGGCAGACACTATCGGACAAAACACGCGAGAAGATGCTGATTTG
CATGGAGAGTATCTTGGCCAGCCTAAGTGCAATAGCTGTGACGGTACGGG
AGCAAATTGTTCTTGACAAAAGAAGATGGACAATTATGCAATTGGAACTC
AACGTCAAATCCAGCCGGGAAGAAGTCGAGTTATTGCGGGAAGTAGGCCC
ACCCGACGCCGCTGAAGAGGCTGTCAACGGCCTACGAGACGCACTGAAGG
CACTCCGCGCAGCGGTGAAGCCTGCTCAGCTGACTACTGTACGAAGCTGG
CGTGAAAGATCGGGGGCAGATGGTGCCGGCGATGACGAGCCTACAGGCGA
CGGAGCGGCGGCGTCTGGGGACAATGGCCATGGACATGAAAGGGGTGAAT
CAGTTGAAGGGCACCACGAAAACGCAGCCTTTTCTGGCGAAGATGATAGC
ATCATAACTGTCATTTGA
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