mRNA_H-paniculata_contig4306.10995.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4306.10995.1
Unique NamemRNA_H-paniculata_contig4306.10995.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4306.10995.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.460e-57
Identity = 112/254 (44.09%), Postives = 154/254 (60.63%), Query Frame = 2 
Query:  281 ASLERCAPRFQQWRYLSAVRGRQLCANILRPEIVQVN----------DESWFVAVHVDRAPTVALTTRPRAGNLRGDRDRRPRQQVATHRELPHQYFVKVVEATMNAISSVEPGASVDVVVFSEGRWGEMVDEQGVPIDWDIGSEICEELGLQCSQELVLLNSHRRTNELPRSVVPEALECIGGADVFISSEDEFSRAAAALSHNVKVLTDQWEEDADEDEQMTPLDVATTIAGMKNAELDQLKRVVGEWRECS 1012
            A   RCA R ++ R L     R+ CA +L    +  +           ESW V+VHVDRAP+              D  +R R     HR LPHQY+V+ +EA++++I+  EPGA VDV +FSEG+WG MVDE G+P+ WD+  E C++LGL CSQ +VLLN        P S   ++LECI  +D+FI+SE +FSRA A LS +VKVLTD+WE   DE+E M  L+ ATTIAGM +++   L+ +V ++ ECS
Sbjct:   36 AQQNRCAERIERRRGLGVPPDREQCAGVLPDSFMMQHGGGGGEDGRDSESWLVSVHVDRAPSSV------------DLSKRLRGAAPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCSQHVVLLNERTA----PES--SQSLECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWE--MDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECS 269
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BLAST of mRNA_H-paniculata_contig4306.10995.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.510e-56
Identity = 111/254 (43.70%), Postives = 155/254 (61.02%), Query Frame = 2 
Query:  281 ASLERCAPRFQQWRYLSAVRGRQLCANILRPEIVQVN----------DESWFVAVHVDRAPTVALTTRPRAGNLRGDRDRRPRQQVATHRELPHQYFVKVVEATMNAISSVEPGASVDVVVFSEGRWGEMVDEQGVPIDWDIGSEICEELGLQCSQELVLLNSHRRTNELPRSVVPEALECIGGADVFISSEDEFSRAAAALSHNVKVLTDQWEEDADEDEQMTPLDVATTIAGMKNAELDQLKRVVGEWRECS 1012
            A   RCA R ++ R L     R+ CA +L    +  +           ESW V+VHVDRAP+              D  +R R  V  HR LPHQY+V+ +EA++++I+  EPGA VDV +FSEG+WG MVDE G+P+ WD+  E C++LGL C+Q +VLLN        P S   ++L+CI  +D+FI+SE +FSRA A LS +VKVLTD+WE   DE+E M  L+ ATTIAGM +++   L+ +V ++ ECS
Sbjct:  141 AQQNRCAERIERRRGLGVPPDREQCAGVLPDSFMMQHGGGGAEDGRDSESWLVSVHVDRAPSSV------------DLSKRLRGAVPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCTQHVVLLNERTA----PES--SQSLDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWE--MDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECS 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4306.10995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHD0_ECTSI1.460e-5744.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y9_9PHAE5.510e-5643.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4306contigH-paniculata_contig4306:1082..3481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1712
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4306.10995.1prot_H-paniculata_contig4306.10995.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4306 1749..3339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.4533615-UTR-H-paniculata_contig4306:1081..17481622930308.4533615-UTR-H-paniculata_contig4306:1081..1748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4306 1082..1748 -
1691481235.272172-UTR-H-paniculata_contig4306:1081..17481691481235.272172-UTR-H-paniculata_contig4306:1081..1748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4306 1082..1748 -
1622930308.5085747-UTR-H-paniculata_contig4306:3339..34811622930308.5085747-UTR-H-paniculata_contig4306:3339..3481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4306 3340..3481 -
1691481235.2971604-UTR-H-paniculata_contig4306:3339..34811691481235.2971604-UTR-H-paniculata_contig4306:3339..3481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4306 3340..3481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.473108-CDS-H-paniculata_contig4306:1748..20751622930308.473108-CDS-H-paniculata_contig4306:1748..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4306 1749..2075 -
1691481235.2807405-CDS-H-paniculata_contig4306:1748..20751691481235.2807405-CDS-H-paniculata_contig4306:1748..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4306 1749..2075 -
1622930308.4881594-CDS-H-paniculata_contig4306:2763..33391622930308.4881594-CDS-H-paniculata_contig4306:2763..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4306 2764..3339 -
1691481235.2887683-CDS-H-paniculata_contig4306:2763..33391691481235.2887683-CDS-H-paniculata_contig4306:2763..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4306 2764..3339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4306.10995.1

>prot_H-paniculata_contig4306.10995.1 ID=prot_H-paniculata_contig4306.10995.1|Name=mRNA_H-paniculata_contig4306.10995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
MSSRQVSSRNSSSYAARPHNININVRLLAVGIAAGAIALFATPTTAASLE
RCAPRFQQWRYLSAVRGRQLCANILRPEIVQVNDESWFVAVHVDRAPTVA
LTTRPRAGNLRGDRDRRPRQQVATHRELPHQYFVKVVEATMNAISSVEPG
ASVDVVVFSEGRWGEMVDEQGVPIDWDIGSEICEELGLQCSQELVLLNSH
RRTNELPRSVVPEALECIGGADVFISSEDEFSRAAAALSHNVKVLTDQWE
EDADEDEQMTPLDVATTIAGMKNAELDQLKRVVGEWRECSLQAKYTRFRA
*
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mRNA from alignment at H-paniculata_contig4306:1082..3481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4306.10995.1 ID=mRNA_H-paniculata_contig4306.10995.1|Name=mRNA_H-paniculata_contig4306.10995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2400bp|location=Sequence derived from alignment at H-paniculata_contig4306:1082..3481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCATCAAGTCGATCACAACGCTCTCTTCTGACCCACAGCTACTTGCT
GCCGACAACGTCAAACCACTATCCACAATCCAACGGGTATTCAACGAAGT
CAGTGTCTACCGAGAGACCAGAAGACGACACACATACACACCATGTCCTC
CCGCCAAGTATCTTCGCGAAACAGCAGCAGCTATGCCGCCCGCCCACATA
ACATCAACATCAACGTGCGCCTACTCGCCGTCGGTATCGCGGCTGGTGCC
ATAGCACTATTTGCCACCCCCACCACTGCTGCTTCTCTGGAACGATGCGC
ACCCCGATTTCAACAATGGCGATACCTATCCGCCGTGCGCGGCCGTCAAC
TGTGCGCCAACATTCTTAGGCCGGAGATCGTACAGGTAAACGATGAGAGC
TGGTTTGTGGCCGTGCACGTGGACCGGGCGCCCACGGTAGCCCTCACGAC
TAGACCTCGAGCAGGAAACTTGCGCGGCGATCGGGACAGGCGCCCTCGGC
AGCAGGTGGCGACGCACAGGGAGCTTCCGCACCAGTACTTCGTGAAGGTG
GTGGAGGCTACCATGAACGCCATATCTAGCGTGGAACCAGGAGCGAGCGT
GGACGTGGTGGTGTTCAGCGAGGGGCGGTGGGGAGAGATGGTGGATGAAC
AGGGTGTGCCGATCGACTGGGACATCGGGAGCGAGATCTGCGAGGAGCTC
GGGCTGCAGTGCTCTCAGGTACAAAGCGCTGTCTGTAGACTCTGTGGGCT
GATCAGTTGTATCCTGCCCCGTAAATTTGTTTTCAACATACCTTTTACCT
TCAATCTAAATTTCTTATTTTGAATACAGCGAATCCTTCACTGCGAGTAT
GGCAAAAATATTAGCTAGCGTGCCACAAGTTGTGGTGATCAGCCCGAAAC
GTCATGACTGATGGCGTGATTCGTAGTTGGGCGTTGTTCGAAAGTCTCGT
TGCTTCCACCAACTAGCAGTGCAACAAGGTTGTTGCTGTGCTGTAGATCT
TGTAGAGGAGTTGGAGAGTAATGAAATAGGAGTGAAATAAGTGGGGTGCA
GTCTCCTCACAGCAGAGGAAAGAGACTTGCATCTATGGAAATGTTATGGA
GAATCACGAATCCCAGCGAAATGCCCCGCGTATCTCTCTATGTTATGATC
TAGAGTAATGTAACGAACAGGCGTTACGCTTTCCAGAACTACGTTATTTG
TAGGTGTCAACAGGTGAAGGGGTTCGCACGGATAGCAACGGCGTAAGATA
CAGCCCTAGGCGCCACCAAGCGCGTTCCTCGTCAAGTAAGTCCAGAATGT
GAAAAGTAAAGGAGCATTGATACCGTTATCAAATCTATTCGCCACCGCAA
CACTCACTCCTCCGCCCCCGCCTTTCCTATCTCCCCTCATTCGTCCCTAT
CTCCAGGAGCTGGTCCTCCTCAACAGCCACAGGAGAACAAACGAGCTGCC
GCGAAGTGTTGTACCAGAGGCCCTAGAGTGCATAGGTGGAGCAGACGTGT
TCATTAGCAGCGAAGACGAGTTTTCACGGGCAGCCGCTGCGCTCTCGCAC
AACGTGAAGGTTCTCACAGATCAGTGGGAAGAAGACGCGGACGAGGATGA
GCAAATGACCCCCCTTGACGTAGCGACCACTATCGCTGGCATGAAGAATG
CTGAGCTAGACCAGTTGAAGAGAGTCGTGGGGGAGTGGAGGGAATGCTCT
TTGCAGGCAAAGTACACTCGTTTCAGGGCGTGATAATTTTCTCTTGTACG
ATCGATACCGTGGGTATTCGGGTTGAACACTCCCCTTGGGGATGTGAATA
TCCTCTCCGGATTATCTTCCCCGATGTTGGTCTTCGGCGAGGCAGGTGTT
GCTCTTGGTTCGAATTTGTTTGGCGGTTTGTCTATGTTAGTGTGTGTCTG
TGTGTCTGTGTGTATGTGTATGTGTGTGTGTCTGTGTGTTTGTGTATGTG
TGTGTGTCTGTGTGTTTGTGTTTGTTAGTGGAATGGTCGAGTGTGCGCAA
GCATGCGCCAACCTGGTGTTTTGAGGACATGGGCCGAAGATATTGCTTCC
ACGAAGTCTTCAGCATTAGTCGTACTCTTGTATCTTCCTCTCAGGGGCTA
CCACGGCCTGTCTTTTGTTGTGCGGTGATGTTGGTTGTAGATTGTTGATA
TTTTTGTTTTTTGAGGGTGGTTTCTCGATCTTTAATGAACCCCTATTCAT
CCTTCTCTTGCTAGATGTTAGACTGGTTGAGTTCCTGCTCCTACCGAATT
TACTTTCCGAGATTTTGGGGGTGTCTTTTGTCGTATAGTGCACAATACAT
GAATCTGATCATATCTTATCATGGCGTAGCACAACGTTGATTTATTGTGT
ACCTTTTTTGTGTCTCGTCTTGTGTGTCTCGAAGTGTCTTCATAGTTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4306:1082..3481-

>mRNA_H-paniculata_contig4306.10995.1 ID=mRNA_H-paniculata_contig4306.10995.1|Name=mRNA_H-paniculata_contig4306.10995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig4306:1082..3481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCCCGCCAAGTATCTTCGCGAAACAGCAGCAGCTATGCCGCCCG
CCCACATAACATCAACATCAACGTGCGCCTACTCGCCGTCGGTATCGCGG
CTGGTGCCATAGCACTATTTGCCACCCCCACCACTGCTGCTTCTCTGGAA
CGATGCGCACCCCGATTTCAACAATGGCGATACCTATCCGCCGTGCGCGG
CCGTCAACTGTGCGCCAACATTCTTAGGCCGGAGATCGTACAGGTAAACG
ATGAGAGCTGGTTTGTGGCCGTGCACGTGGACCGGGCGCCCACGGTAGCC
CTCACGACTAGACCTCGAGCAGGAAACTTGCGCGGCGATCGGGACAGGCG
CCCTCGGCAGCAGGTGGCGACGCACAGGGAGCTTCCGCACCAGTACTTCG
TGAAGGTGGTGGAGGCTACCATGAACGCCATATCTAGCGTGGAACCAGGA
GCGAGCGTGGACGTGGTGGTGTTCAGCGAGGGGCGGTGGGGAGAGATGGT
GGATGAACAGGGTGTGCCGATCGACTGGGACATCGGGAGCGAGATCTGCG
AGGAGCTCGGGCTGCAGTGCTCTCAGATGTCCTCCCGCCAAGTATCTTCG
CGAAACAGCAGCAGCTATGCCGCCCGCCCACATAACATCAACATCAACGT
GCGCCTACTCGCCGTCGGTATCGCGGCTGGTGCCATAGCACTATTTGCCA
CCCCCACCACTGCTGCTTCTCTGGAACGATGCGCACCCCGATTTCAACAA
TGGCGATACCTATCCGCCGTGCGCGGCCGTCAACTGTGCGCCAACATTCT
TAGGCCGGAGATCGTACAGGTAAACGATGAGAGCTGGTTTGTGGCCGTGC
ACGTGGACCGGGCGCCCACGGTAGCCCTCACGACTAGACCTCGAGCAGGA
AACTTGCGCGGCGATCGGGACAGGCGCCCTCGGCAGCAGGTGGCGACGCA
CAGGGAGCTTCCGCACCAGTACTTCGTGAAGGTGGTGGAGGCTACCATGA
ACGCCATATCTAGCGTGGAACCAGGAGCGAGCGTGGACGTGGTGGTGTTC
AGCGAGGGGCGGTGGGGAGAGATGGTGGATGAACAGGGTGTGCCGATCGA
CTGGGACATCGGGAGCGAGATCTGCGAGGAGCTCGGGCTGCAGTGCTCTC
AGGAGCTGGTCCTCCTCAACAGCCACAGGAGAACAAACGAGCTGCCGCGA
AGTGTTGTACCAGAGGCCCTAGAGTGCATAGGTGGAGCAGACGTGTTCAT
TAGCAGCGAAGACGAGTTTTCACGGGCAGCCGCTGCGCTCTCGCACAACG
TGAAGGTTCTCACAGATCAGTGGGAAGAAGACGCGGACGAGGATGAGCAA
ATGACCCCCCTTGACGTAGCGACCACTATCGCTGGCATGAAGAATGCTGA
GCTAGACCAGTTGAAGAGAGTCGTGGGGGAGTGGAGGGAATGCTCTTTGC
AGGCAAAGTACACTCGTTTCAGGGCGTGAGAGCTGGTCCTCCTCAACAGC
CACAGGAGAACAAACGAGCTGCCGCGAAGTGTTGTACCAGAGGCCCTAGA
GTGCATAGGTGGAGCAGACGTGTTCATTAGCAGCGAAGACGAGTTTTCAC
GGGCAGCCGCTGCGCTCTCGCACAACGTGAAGGTTCTCACAGATCAGTGG
GAAGAAGACGCGGACGAGGATGAGCAAATGACCCCCCTTGACGTAGCGAC
CACTATCGCTGGCATGAAGAATGCTGAGCTAGACCAGTTGAAGAGAGTCG
TGGGGGAGTGGAGGGAATGCTCTTTGCAGGCAAAGTACACTCGTTTCAGG
GCGTGA
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