mRNA_H-paniculata_contig4305.10993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4305.10993.1 vs. uniprot
Match: D7FTX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX4_ECTSI) HSP 1 Score: 116 bits (290), Expect = 6.730e-24 Identity = 118/270 (43.70%), Postives = 146/270 (54.07%), Query Frame = 1
Query: 1294 VSAPATPVMVYTYPHGYMMAYTQARTP--QQP--TVSQA--AWNPYECVSPAGEVPTAQQGFSRVRADRPHQESPSIVSREGSPVLTGEDQTGATSACTKDSVRDLGSFSSSASMQAREYSSRASSTSNLSDVIDRGFDEENDPAPTLADRKPLLPEPLKLGDDQEGLTSARQVSPPETPVRTR-------GSSAQGEDDKENMRDSQGGVLRNGKEGSGSSSVESTPEEQLSGKKR-GGD-SIEKQKSFTGSYFQVSPASFLQPSKRQR 2058
+SAP TPVMVY HGYMMAY P Q P T SQA AW+PYECVSP+GE + GF R + P +S EGSPV A S ++ S+ G + Q SRASS +SDVI+ G +D A +P L P L EG T S +TP+R R G +A +DKEN + G + GK+ G + +E+ ++QLSG+KR GGD IEKQKSFTGSYFQVSP+SFLQ SKRQR
Sbjct: 131 MSAPVTPVMVYAPGHGYMMAYPPVNVPSVQTPRSTRSQASKAWDPYECVSPSGE--STHAGFGRRGKETPD------LSPEGSPVALSS----AMSVSSRGSLSKQGGRGDDDASQGLR--SRASSV--ISDVIEGGV-LNDDSRQNKASSQPSLANPALL--PLEGKTDNEDGSY-KTPIRLRLSCETSAGGTATDGEDKENSQVG-AGFVGGGKKREGEAVLEA--KKQLSGQKRAGGDIDIEKQKSFTGSYFQVSPSSFLQSSKRQR 377
BLAST of mRNA_H-paniculata_contig4305.10993.1 vs. uniprot
Match: A0A6H5KL22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL22_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 6.620e-9 Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 1
Query: 1639 SRASSTSNLSDVIDRGFDEENDPAPTLADRKPLLPEPLKLGDDQEGLTSARQVSPPETPVRTR--------GSSAQGEDDKENMRDSQGGVLRNGKEGSGSSSVESTPEEQLSGKKRGGDSIEKQKSFTGSYFQVSPASFLQPSKRQR 2058
SRASS +SDVI+ G +D A+ +P L P L EG T S +TP R R G++A G D KEN + G++ GK+ G +++E+ ++Q+SG+KR G IEKQKSFTGSYFQVSP+SFL+ SKRQR
Sbjct: 26 SRASSV--ISDVIEGGG-LNDDSRQNKANSQPSLAIPALL--PLEGKTDNEDGSY-KTPSRVRLSCETSAGGTAADGAD-KENSQVG-AGLVGGGKKREGDAALEA--KKQISGQKRTGGDIEKQKSFTGSYFQVSPSSFLKSSKRQR 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4305.10993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4305.10993.1 >prot_H-paniculata_contig4305.10993.1 ID=prot_H-paniculata_contig4305.10993.1|Name=mRNA_H-paniculata_contig4305.10993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=617bp MNGRNMAPQKDLPSAASTPAPPLLPPPVLSAAQQGHLRQILREREVNGHQback to top mRNA from alignment at H-paniculata_contig4305:1412..14859+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4305.10993.1 ID=mRNA_H-paniculata_contig4305.10993.1|Name=mRNA_H-paniculata_contig4305.10993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13448bp|location=Sequence derived from alignment at H-paniculata_contig4305:1412..14859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4305:1412..14859+ >mRNA_H-paniculata_contig4305.10993.1 ID=mRNA_H-paniculata_contig4305.10993.1|Name=mRNA_H-paniculata_contig4305.10993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3702bp|location=Sequence derived from alignment at H-paniculata_contig4305:1412..14859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |