mRNA_H-paniculata_contig43046.10992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43046.10992.1
Unique NamemRNA_H-paniculata_contig43046.10992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A6A7FPR6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR6_9CRUS)

HSP 1 Score: 65.1 bits (157), Expect = 3.950e-11
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV 213
            V +L KSLYGLKQ+ RNWNN L DFLV +  ++S  D CLY    D  +   ++ +Y+DD+++A     V
Sbjct:  112 VCKLNKSLYGLKQSGRNWNNVLHDFLVNIGFEQSFADQCLYTRYKDNIKI--ILIIYVDDIILAASNNAV 179          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A1Y1NIJ3_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NIJ3_PHOPY)

HSP 1 Score: 66.6 bits (161), Expect = 4.040e-11
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV 213
            V RL++SLYGLKQ++R+WNN L   LVG   +RS  D CLY  + +G      + VY+DDL+IA   EK+
Sbjct:   16 VCRLKRSLYGLKQSARSWNNKLHQVLVGDGFKRSEADPCLYSKQVNGKRC--YILVYVDDLIIASEEEKL 83          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS)

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-10
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV 213
            V +L KSLYGLKQ+ RNWNN L DFLV +  ++S  D CLY    D  +   ++ +Y+DD+++A     V
Sbjct:  127 VCKLNKSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDNIKI--ILIIYVDDIILAASNNAV 194          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL)

HSP 1 Score: 64.7 bits (156), Expect = 1.950e-10
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV 213
            V RL++SLYGLKQ +R+WN    +F+V L   RS  D CLY  R   G+T  ++ +Y+DD++IA   EK+
Sbjct:  235 VCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY--RRGSGDTQVILVIYVDDVLIASGSEKL 302          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A2P4X4H2_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4H2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.540e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   10 RLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRR 204
            RL KSLYGLKQ+ + WN+ + ++L+ L   RS  D CLYF R DG  T  ++ +YIDD+V+  +R
Sbjct:  124 RLLKSLYGLKQSGKLWNDEIHNYLLELGFMRSKLDPCLYFRRSDGKLT--VLGLYIDDVVVVSQR 186          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 2.590e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV 213
            V +L++SLYGLKQ+ R WN  + DF++ L  ++  +D C+Y  RD  G+    VA+Y+DDLV+A   +K+
Sbjct:  144 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKM 211          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A5S6QM97_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QM97_TRIMR)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-10
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKVDK 219
            V RL++S+YGLKQ++R WN    + L  L   R+  D CLY  R+  G T + V +Y+DDL++AG  E++ +
Sbjct:  453 VLRLKRSIYGLKQSARAWNKKATEVLTSLDFDRANADLCLYIRRESTGGT-TYVLLYVDDLLVAGETEEITR 523          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 2.840e-10
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKV-DKLKH 228
            V +L++SLYGLKQ+ R WN  + DF++ L  ++  +D C+Y  RD  G+    VA+Y+DDLV+A   +++ D  KH
Sbjct:  425 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKH 498          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A7D9J3T8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J3T8_PARCT)

HSP 1 Score: 63.9 bits (154), Expect = 3.890e-10
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKVDK 219
            VR+L KS+YGLKQ ++NW  AL   L+    +RS  D CL+  +++ G T S V V++DD+V+AG  E+  K
Sbjct:  233 VRKLNKSIYGLKQAAKNWYEALTSLLLKKGFKRSCNDYCLFVRKEENG-TFSYVLVWVDDIVVAGATEEAIK 303          
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Match: A0A5S6QQI6_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QQI6_TRIMR)

HSP 1 Score: 63.5 bits (153), Expect = 5.320e-10
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 VRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGETDSLVAVYIDDLVIAGRREKVDK 219
            V RL++S+YGLKQ++R WN    + L  L   R+  D CLY  R+  G T + V +Y+DDL++AG  E++ +
Sbjct:  230 VLRLKRSIYGLKQSARAWNKKATEVLTSLGFDRANADLCLYTRRESTGGT-TYVLLYVDDLLVAGETEEITR 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43046.10992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7FPR6_9CRUS3.950e-1144.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1NIJ3_PHOPY4.040e-1148.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A7FPR7_9CRUS1.200e-1044.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GR37_AEDAL1.950e-1045.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4X4H2_9STRA2.540e-1047.69Integrase catalytic core protein n=1 Tax=Phytophth... [more]
H3H7D1_PHYRM2.590e-1042.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QM97_TRIMR2.830e-1041.67Integrase catalytic domain-containing protein n=2 ... [more]
H3H9Y1_PHYRM2.840e-1042.11CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A7D9J3T8_PARCT3.890e-1044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QQI6_TRIMR5.320e-1041.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43046contigH-paniculata_contig43046:262..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.0504668-CDS-H-paniculata_contig43046:261..4891622930308.0504668-CDS-H-paniculata_contig43046:261..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43046 262..489 +
1691481235.099099-CDS-H-paniculata_contig43046:261..4891691481235.099099-CDS-H-paniculata_contig43046:261..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43046 262..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43046.10992.1prot_H-paniculata_contig43046.10992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43046 262..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43046.10992.1

>prot_H-paniculata_contig43046.10992.1 ID=prot_H-paniculata_contig43046.10992.1|Name=mRNA_H-paniculata_contig43046.10992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
FVRRLRKSLYGLKQTSRNWNNALRDFLVGLRLQRSTTDSCLYFSRDDGGE
TDSLVAVYIDDLVIAGRREKVDKLKH
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mRNA from alignment at H-paniculata_contig43046:262..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43046.10992.1 ID=mRNA_H-paniculata_contig43046.10992.1|Name=mRNA_H-paniculata_contig43046.10992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=230bp|location=Sequence derived from alignment at H-paniculata_contig43046:262..491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGCGTCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGACCAGCCG TAACTGGAATAACGCCCTTCGCGATTTTCTTGTTGGGCTAAGACTCCAGC GTTCCACGACCGACTCATGCTTGTACTTCTCTCGCGACGATGGGGGAGAG ACAGACTCTCTGGTGGCCGTCTATATTGACGACCTGGTCATCGCTGGACG TCGTGAAAAAGTAGACAAGCTCAAGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43046:262..491+

>mRNA_H-paniculata_contig43046.10992.1 ID=mRNA_H-paniculata_contig43046.10992.1|Name=mRNA_H-paniculata_contig43046.10992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig43046:262..491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGCGTCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGACCAGCCG
TAACTGGAATAACGCCCTTCGCGATTTTCTTGTTGGGCTAAGACTCCAGC
GTTCCACGACCGACTCATGCTTGTACTTCTCTCGCGACGATGGGGGAGAG
ACAGACTCTCTGGTGGCCGTCTATATTGACGACCTGGTCATCGCTGGACG
TCGTGAAAAAGTAGACAAGCTCAAGCATTTTGTGCGTCGCCTGCGTAAAA
GCCTGTACGGCCTCAAGCAGACCAGCCGTAACTGGAATAACGCCCTTCGC
GATTTTCTTGTTGGGCTAAGACTCCAGCGTTCCACGACCGACTCATGCTT
GTACTTCTCTCGCGACGATGGGGGAGAGACAGACTCTCTGGTGGCCGTCT
ATATTGACGACCTGGTCATCGCTGGACGTCGTGAAAAAGTAGACAAGCTC
AAGCAT
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