mRNA_H-paniculata_contig11719.1099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11719.1099.1
Unique NamemRNA_H-paniculata_contig11719.1099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 61.2 bits (147), Expect = 7.040e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLSLCWRQRGSRY I AGRN P+KEFRY RTV  +TA
Sbjct:   10 ISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVI-VTA 46          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A6G0W3P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3P6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.860e-10
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    4 SLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            SLSLCWRQRG RYTIHAGRN P+KEFRY RTV  +TA
Sbjct:  196 SLSLCWRQRGCRYTIHAGRNLPDKEFRYLRTVR-VTA 231          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A6A5LBS9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBS9_LUPAL)

HSP 1 Score: 61.2 bits (147), Expect = 8.420e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLSLCWRQRGSRY I AGRN P+KEFRY RTV  +TA
Sbjct:  305 ISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVI-VTA 341          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 61.2 bits (147), Expect = 8.520e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLSLCWRQRGSRY I AGRN P+KEFRY RTV  +TA
Sbjct:  423 ISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVI-VTA 459          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: H6SIA9_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIA9_PARPM)

HSP 1 Score: 58.9 bits (141), Expect = 8.540e-10
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLS CWRQRGSRY I AGRN P+KEFRY RTV  +TA
Sbjct:   94 ISLSWCWRQRGSRYAIRAGRNLPDKEFRYLRTVI-VTA 130          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: H6SIE1_PARPM (Putative glycosyl transferase (Glycosyl transferase family 2) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE1_PARPM)

HSP 1 Score: 58.9 bits (141), Expect = 3.940e-9
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLS CWRQRGSRY I AGRN P+KEFRY RTV  +TA
Sbjct:  213 ISLSWCWRQRGSRYAIRAGRNLPDKEFRYLRTVI-VTA 249          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: C0QQH9_PERMH (Uncharacterized protein n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) TaxID=123214 RepID=C0QQH9_PERMH)

HSP 1 Score: 55.1 bits (131), Expect = 5.640e-8
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITADHP 123
            IS  L  RQRG R+TIHAGRN P+KEFRYHRTV    A +P
Sbjct:   68 ISPGLSSRQRGDRWTIHAGRNLPDKEFRYHRTVIVTAAVYP 108          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A0J7YPB0_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J7YPB0_BETVV)

HSP 1 Score: 52.8 bits (125), Expect = 9.310e-8
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 2
Query:    2 FH*ASVGDSEEVVTPFMRVGTSPTRNFATIGP 97
            FH  S GDS  VVTPFM+VGT PTRNFAT+GP
Sbjct:   25 FHRVSRGDSAPVVTPFMQVGTYPTRNFATLGP 56          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A0R3RDH7_9BILA (Uncharacterized protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3RDH7_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-7
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLSLCWRQR   Y I AGRN P+KEFRY RTV  +TA
Sbjct:   84 ISLSLCWRQRRHHYAIRAGRNLPDKEFRYLRTVI-VTA 120          
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Match: A0A381VFD6_9ZZZZ (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A381VFD6_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 1.730e-7
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITA 114
            ISLSL WRQ G RY I AGRN P+KEFRY RTV  +TA
Sbjct:   26 ISLSLGWRQCGRRYAIRAGRNLPDKEFRYLRTVI-VTA 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11719.1099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J8BG93_BETVV7.040e-1178.95Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A0A6G0W3P6_9STRA2.860e-1081.08Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5LBS9_LUPAL8.420e-1078.95Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L965_LUPAL8.520e-1078.95Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
H6SIA9_PARPM8.540e-1076.32Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
H6SIE1_PARPM3.940e-976.32Putative glycosyl transferase (Glycosyl transferas... [more]
C0QQH9_PERMH5.640e-865.85Uncharacterized protein n=1 Tax=Persephonella mari... [more]
A0A0J7YPB0_BETVV9.310e-875.00Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A0A0R3RDH7_9BILA1.050e-771.05Uncharacterized protein n=1 Tax=Brugia timori TaxI... [more]
A0A381VFD6_9ZZZZ1.730e-771.05Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11719contigH-paniculata_contig11719:7910..8038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.5222898-CDS-H-paniculata_contig11719:7909..80381622928880.5222898-CDS-H-paniculata_contig11719:7909..8038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11719 7910..8038 +
1691480655.084399-CDS-H-paniculata_contig11719:7909..80381691480655.084399-CDS-H-paniculata_contig11719:7909..8038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11719 7910..8038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11719.1099.1prot_H-paniculata_contig11719.1099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11719 7910..8038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11719.1099.1

>prot_H-paniculata_contig11719.1099.1 ID=prot_H-paniculata_contig11719.1099.1|Name=mRNA_H-paniculata_contig11719.1099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
ISLSLCWRQRGSRYTIHAGRNFPNKEFRYHRTVTHITADHPK*
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mRNA from alignment at H-paniculata_contig11719:7910..8038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11719.1099.1 ID=mRNA_H-paniculata_contig11719.1099.1|Name=mRNA_H-paniculata_contig11719.1099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig11719:7910..8038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTCACTAAGCCTCTGTTGGAGACAGCGAGGAAGTCGTTACACCATTCA TGCGGGTCGGAACTTCCCCAACAAGGAATTTCGCTACCATAGGACCGTCA CACACATAACAGCCGATCATCCTAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11719:7910..8038+

>mRNA_H-paniculata_contig11719.1099.1 ID=mRNA_H-paniculata_contig11719.1099.1|Name=mRNA_H-paniculata_contig11719.1099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig11719:7910..8038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTCACTAAGCCTCTGTTGGAGACAGCGAGGAAGTCGTTACACCATTCA
TGCGGGTCGGAACTTCCCCAACAAGGAATTTCGCTACCATAGGACCGTCA
CACACATAACAGCCGATCATCCTAAATGAATTTCACTAAGCCTCTGTTGG
AGACAGCGAGGAAGTCGTTACACCATTCATGCGGGTCGGAACTTCCCCAA
CAAGGAATTTCGCTACCATAGGACCGTCACACACATAACAGCCGATCATC
CTAAATGA
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