mRNA_H-paniculata_contig4303.10990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4303.10990.1
Unique NamemRNA_H-paniculata_contig4303.10990.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 8.960e-41
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQAMT 228
            RLG RVK+VREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIK VYSKMRARQAMT
Sbjct:   35 RLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAMT 110
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN)

HSP 1 Score: 120 bits (300), Expect = 8.870e-34
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQAM 225
            RL  R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YKFAK RLGTHKRA+ KRED+K +Y++MRARQAM
Sbjct:   21 RLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGTHKRAIKKREDMKDIYAQMRARQAM 95
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: A0A6V1KD91_HETAK (60S ribosomal protein L36 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KD91_HETAK)

HSP 1 Score: 119 bits (298), Expect = 2.400e-33
Identity = 57/73 (78.08%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    7 GVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQAM 225
            G RV +VREV+REV+GLMPYE+R+LDM+KTGG  +EKRIYKFAKRRLGTHKRALAKRE++KG+Y K+RARQAM
Sbjct:   34 GKRVAVVREVIREVSGLMPYERRMLDMVKTGGVGSEKRIYKFAKRRLGTHKRALAKREEVKGIYGKIRARQAM 106
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.120e-33
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQ 219
            RLG RV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YKFAK+RLGTHKRALAKR+DIK +Y+K RA Q
Sbjct:   28 RLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGTHKRALAKRDDIKDMYAKQRAHQ 100
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: B8BZT3_THAPS (60S ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS)

HSP 1 Score: 116 bits (290), Expect = 3.860e-32
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQA 222
            RLG R  L RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYKFAKRRLG+HKRALAKREDIK V SKMRA+QA
Sbjct:   31 RLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRLGSHKRALAKREDIKAVNSKMRAKQA 104
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: K0T5I4_THAOC (60S ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.290e-30
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQA 222
            +LG R  L RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRRLG+HKRA+AKREDIK + SKMRA+QA
Sbjct:   31 KLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVAKREDIKAINSKMRAKQA 104
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: K8YZ07_NANGC (60S ribosomal protein L36 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ07_NANGC)

HSP 1 Score: 112 bits (280), Expect = 1.290e-30
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   13 RVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQA 222
            +VKLVREVVR+V GLMPYEKRILD+IKTGG+ AEK++YKFAKRRLGTH+RAL KRE+IK  YSK+RARQA
Sbjct:   35 KVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQA 104
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: A0A5D6XYW5_9STRA (60S ribosomal protein L36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.920e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQA 222
            R G ++KLVR VVREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+RLGTH+RAL KRE++K  Y+ +RA+QA
Sbjct:   64 RAGKKIKLVRSVVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKQA 137
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: A0A6U3YL72_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YL72_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.820e-29
Identity = 52/71 (73.24%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:   13 RVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQAM 225
            +V+LVR+V+REV+GL+ YE+R++DM+KTGGASAEKR+YKFAK+RLG+HKRAL KREDIK VYS+MRA+ AM
Sbjct:   32 KVELVRDVIREVSGLLQYERRLMDMLKTGGASAEKRMYKFAKKRLGSHKRALKKREDIKDVYSRMRAKAAM 102
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BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Match: A0A485L033_9STRA (60S ribosomal protein L36 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L033_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.250e-29
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKGVYSKMRARQA 222
            R G + K VR +VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+RLGTHKRALAKRE++K  Y+  RA+QA
Sbjct:   55 RAGKKTKFVRAIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHKRALAKREEMKAYYAAQRAKQA 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4303.10990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGM7_9PHAE8.960e-4196.0560S ribosomal protein L36 (Fragment) n=3 Tax=Phaeo... [more]
F0YH51_AURAN8.870e-3480.0060S ribosomal protein L36 n=1 Tax=Aureococcus anop... [more]
A0A6V1KD91_HETAK2.400e-3378.0860S ribosomal protein L36 n=1 Tax=Heterosigma akas... [more]
A0A835YST3_9STRA6.120e-3382.1960S ribosomal protein L36 n=1 Tax=Tribonema minus ... [more]
B8BZT3_THAPS3.860e-3281.0860S ribosomal protein L36 n=1 Tax=Thalassiosira ps... [more]
K0T5I4_THAOC1.290e-3075.6860S ribosomal protein L36 n=2 Tax=Thalassiosirales... [more]
K8YZ07_NANGC1.290e-3080.0060S ribosomal protein L36 n=3 Tax=Monodopsidaceae ... [more]
A0A5D6XYW5_9STRA1.920e-2972.9760S ribosomal protein L36 n=1 Tax=Pythium brassicu... [more]
A0A6U3YL72_9STRA3.820e-2973.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485L033_9STRA4.250e-2972.9760S ribosomal protein L36 n=1 Tax=Aphanomyces stel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4303contigH-paniculata_contig4303:13782..14298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.2e-29
Seed eggNOG ortholog2880.D7FQH6
Preferred nameRPL36
KEGG koko:K02920,ko:K03115,ko:K14566,ko:K17973
KEGG Pathwayko03008,ko03010,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map03010,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.cytoplasmic translation
EggNOG OGsCOG5051@1,KOG3452@2759
Ec32 ortholog descriptionRibosomal protein L36e
Ec32 orthologEc-22_003050.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko03029
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930307.8273165-CDS-H-paniculata_contig4303:13781..139251622930307.8273165-CDS-H-paniculata_contig4303:13781..13925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4303 13782..13925 +
1691481235.0255206-CDS-H-paniculata_contig4303:13781..139251691481235.0255206-CDS-H-paniculata_contig4303:13781..13925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4303 13782..13925 +
1622930307.8473382-CDS-H-paniculata_contig4303:14211..142981622930307.8473382-CDS-H-paniculata_contig4303:14211..14298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4303 14212..14298 +
1691481235.0374546-CDS-H-paniculata_contig4303:14211..142981691481235.0374546-CDS-H-paniculata_contig4303:14211..14298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4303 14212..14298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4303.10990.1prot_H-paniculata_contig4303.10990.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4303 13782..14298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4303.10990.1

>prot_H-paniculata_contig4303.10990.1 ID=prot_H-paniculata_contig4303.10990.1|Name=mRNA_H-paniculata_contig4303.10990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
RLGVRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLG
THKRALAKREDIKGVYSKMRARQAMT*
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mRNA from alignment at H-paniculata_contig4303:13782..14298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4303.10990.1 ID=mRNA_H-paniculata_contig4303.10990.1|Name=mRNA_H-paniculata_contig4303.10990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at H-paniculata_contig4303:13782..14298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTCGGTGTGCGCGTGAAGCTCGTGAGGGAGGTGGTAAGAGAGGTAGC
TGGCCTCATGCCGTACGAGAAGCGAATCCTTGACATGATCAAGACTGGCG
GCGCCTCGGCCGAAAAGCGTATCTACAAATTCGCTAAGCGGAGGGTAAGC
AAGAGAATATATGATGGGAAGGAATGAATTTGGCATAGTTTTCGAAAGCA
AGATTCGATTTCGCTGCATGAATAGATACCGCTGGACGATTCGAATTACT
AAACACTTTTTTCGATTTTGTACAGTGTAGTAGTGTAGTGTCATGTATGC
ATTGCATTTTGTGGTAAGTGTTTCAGGATCATGGAAGTGACGGTGATTTT
TTTCTCAAAAAACATGGTAACCTCATAACTGTTCCGCCGCCGATACCTCG
TTTTTCGCGTTCTGCATCCATGAATACTAGCTGGGTACTCACAAGAGGGC
CCTTGCGAAGCGTGAGGACATCAAGGGAGTATACTCCAAGATGCGTGCGC
GTCAGGCCATGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4303:13782..14298+

>mRNA_H-paniculata_contig4303.10990.1 ID=mRNA_H-paniculata_contig4303.10990.1|Name=mRNA_H-paniculata_contig4303.10990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig4303:13782..14298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTCGGTGTGCGCGTGAAGCTCGTGAGGGAGGTGGTAAGAGAGGTAGC
TGGCCTCATGCCGTACGAGAAGCGAATCCTTGACATGATCAAGACTGGCG
GCGCCTCGGCCGAAAAGCGTATCTACAAATTCGCTAAGCGGAGGCGCCTC
GGTGTGCGCGTGAAGCTCGTGAGGGAGGTGGTAAGAGAGGTAGCTGGCCT
CATGCCGTACGAGAAGCGAATCCTTGACATGATCAAGACTGGCGGCGCCT
CGGCCGAAAAGCGTATCTACAAATTCGCTAAGCGGAGGCTGGGTACTCAC
AAGAGGGCCCTTGCGAAGCGTGAGGACATCAAGGGAGTATACTCCAAGAT
GCGTGCGCGTCAGGCCATGACGTGACTGGGTACTCACAAGAGGGCCCTTG
CGAAGCGTGAGGACATCAAGGGAGTATACTCCAAGATGCGTGCGCGTCAG
GCCATGACGTGA
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