mRNA_H-paniculata_contig430.10986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig430.10986.1 vs. uniprot
Match: A0A6H5L5Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y8_9PHAE) HSP 1 Score: 1026 bits (2652), Expect = 0.000e+0 Identity = 555/930 (59.68%), Postives = 653/930 (70.22%), Query Frame = 1
Query: 34 MPRMRRTTSANRDPD--PVQRLPSPESRKLERTRSSTVNNAKCGR-----RLRRYWKWLVFGSGCIAVVLLSAPKGEVAKEENKKTFIFRPS-KPTDVCKDVDSMEWRTLPPDINLSIHVVARGNTDNLRTSLTSLRDACYPEDAWLPLSVWALTAHAKEVLQAQDGFLWTHGTNQLGTLTTVHGEVPPLEGWARMWAHPSAGEVRLVIPEGLELSKLFYLWLSSTLSRYLGEGVTEEERHIFRENVFGISLSATGLSEVSGKPLSWEAYAAADGGHPIFHTLAGSRGTAFFGWQWGDFATFMDARARVLDADSWEGVPLLNISGRAAVPSWAGSLERFLAEFVHGRGLGILHPNLDGRVSFARRLSPLDEGVAEDGASRDSG-----EASTLQQVEATSEPALRGAEDGS--TRPERLVESLKDVTKAL-KQPPVSTLSAYDLMFQRHPDVTHLRLLSYRFMQRLRASASRNEDLEKLWRRPSAPYPNYKDGKYLIYQPQFGMGNQLRALEAGLAVARVLRRILVVPDYISDNGEGIWVRYDAIWEFGFLEELVGRDKVILQADFNEMFNGDSGVDPPTKVYVADMPIKQLTGADEYFERLGWGELPQIPLPLANTTEAGWGEFVNLDDDQVVAISAMFGMFQGWSEESAVGDEHWHRMVKLHVSEEATWLHEFVEDTLSRFRKKAAEAAVKRGRVESAGK--DAMIRQSGASIDSVETEFMCAHVRRQDFEESCARYEEEFESGSGRDWVVEALQGGGVCWVEESDFRQTVDVYLKRAPSQLGVSPLFVFATSDDSRFLEASKVGNAVPVFALDDVT----LPKEVARRNGVQEGEGVH-------SVVGEQTVTAEEVRAALPAIDVAVCSRAPLLVLNYFSTYSALIKSKAKAAPNFVRGMYWKDPPDLSNCWTTYFGWFSKLFQR 2736
M R+RRTTS + P ++L ++LER SS +N+A R RLRR W+ VF C +V LLS P+ ++ +K+ IF+PS + + C+D ++W LP +++ +HVVARGNT NLRT+LTSL +ACYPEDA L L VWALTAHA+EV+ AQDGF+WTHGT Q TLTT HGEVPPLEGWARMW P EVRLV+PEGLELS LFY WL+STL+RYLG GVT EER IFRENVFG+SLSATGLSEVSG P SW AY AAD P+FHTL G+RGTAFFGW+ EG L+++ G SWAGSLERFLAEF HGRGLGILHPNL+G VSFAR+L P EA L Q T P LRG +DG PE LV + +D + K P VS++ AYDL+ +RH DVTHLRL +YRF QRLR S RN+DLE LW+RP P PNY K+LIYQPQFGMGNQLRAL+A LAVARVL R+LVVPDYI+DNGEG VRYDAIWEFGFLEELVGR VILQADF+++ V PPTKVY+ADMPIKQL G DEYF R+GWGELP++PLPLAN TEAGW E ++D QV+AISAMFGMFQGW+ +S VGD HWH MVKLHVSEEA+W+HEFV+D+L RFR+KA EAA + +S G+ D + G + EFMCAHVRRQDFEESC+ YEEE+ +GS RDWV EAL GGGVCWVEE DFR TVDV L+ AP++L VSP FVFATSDD+RFLE KVGNAVPVF LDDV+ GEG + G + VT EEV+AALPAIDVAVCSR LL+LNYFSTYSALIK+KAKA PNF RG+YW DPP LS W+ + GWF + ++R
Sbjct: 1 MQRLRRTTSTSSTSSQPPARQL---SGKRLERRGSSNLNSATSSRPTWRRRLRRNWRGAVFVCVCASVALLSVPRDH-RQQPVRKSSIFKPSHRQRESCRD--EIDWPELPHGVDIDLHVVARGNTHNLRTTLTSLAEACYPEDAELALHVWALTAHAREVMPAQDGFVWTHGTYQFHTLTTKHGEVPPLEGWARMWTDPIDTEVRLVLPEGLELSNLFYFWLASTLARYLGAGVTMEEREIFRENVFGLSLSATGLSEVSGVPSSWGAYEAADKKRPVFHTLPGARGTAFFGWK--------------------EGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXEALPLSQTAHTPTPTLRGTDDGGGGREPEGLVLTYRDANNLIVKYPSVSSVPAYDLLSRRHRDVTHLRLQAYRFFQRLRTSVERNKDLEDLWKRPGMPKPNYALAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYIADNGEGRSVRYDAIWEFGFLEELVGRSNVILQADFDDLLQDCDVVLPPTKVYLADMPIKQLAGNDEYFGRMGWGELPKVPLPLANATEAGWSELQQMED-QVLAISAMFGMFQGWTPDSTVGDTHWHAMVKLHVSEEASWVHEFVDDSLERFREKATEAAAAAEQADSGGEGGDEELSDVGGRNPAA-AEFMCAHVRRQDFEESCSCYEEEYRTGSARDWVKEALDGGGVCWVEEQDFRDTVDVLLRWAPAKLDVSPQFVFATSDDARFLEDIKVGNAVPVFTLDDVSRVAAAXXXXXXXXXXXAGEGFRGPAESSAATAGGKAVTPEEVQAALPAIDVAVCSRGTLLMLNYFSTYSALIKTKAKAQPNFKRGLYWADPPALSTRWSRFCGWFLRKWRR 902
BLAST of mRNA_H-paniculata_contig430.10986.1 vs. uniprot
Match: D8LE24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE24_ECTSI) HSP 1 Score: 761 bits (1964), Expect = 1.800e-254 Identity = 450/878 (51.25%), Postives = 516/878 (58.77%), Query Frame = 1
Query: 418 RDACYPEDAWLPLSVWALTAHAKEVLQAQDGFLWTHGTNQLGTLTTVHGEVPPLEGWARMWAHPSAGEVRLVIPEGLELSKLFYLWLSSTLSRYLGEGVTEEERHIFRENVFGISLSATGLSEVSGKPLSWEAYAAADGGHPIFHTLAGSRGTAFFGWQ------------------------------------WGDFATFMDARARVLDADSWEG-VPLLNISGRAAVPSWAGSLERFLAEFVHGRGLGILHPNLDGRVSFARRLSPLDEGVAEDGASRDSGE------ASTLQQVEATSEPALRGAED---GSTRPERLVESLKD----VTKALKQPPVSTLSAYDLMFQRHPDVTHLRLLSYRFMQRLRASASRNEDLEKLWRRPSAPYPNYKDGKYLIYQPQFGMGNQLRALEAGLAVARVLRRILVVPDYISDNGEGIWVRYDAIWEFGFLEELVGRDKVILQADFNEMFNGDSGVDPPTKVYVADMPIKQLTGADEYFERLGWGELPQIPLPLANTTEAGWGEFVNLDDDQVVAISAMFGMFQGWSEE----------------------------------SAVGDEHWHRMVKLHVSEEATWLHEFVEDTLSRFRKKAAEAAVKRGRVESAGK--DAMIRQSGASIDSVETEFMCAHVRRQDFEESCARYEEEFESGSGRDWVVEALQGGGVCWVEESDFRQTVDVYLKRAPSQLGVSPLFVFATSDDSRFLEASKVGNAVPVFALDDVTLPKEVARRNGVQEGEGVHSVVGEQ-------------------TVTAEEVRAALPAIDVAVCSRAPLLVLNYFSTYSALIKSKAKAAPNFVRGMYWKDPPDLSNCWTTYFGWFSKLFQR 2736
R+ACYPE A L L VWALTAHA+EV+ AQDGF+WTHGT Q TLTT HGEVPPLEGWARMW P EVRLV+PEGLELS LFY WLSSTL+RYLG VT EER IFR+NVFG+SLSATGLSEVSGKP SW AY AAD P+FHTL G+RGTAFFGW+ WGDF+ FMDARARVL++DSWEG L ++ G SWAGSLERFLAEF HGRGLGILHPNL+G VSFAR+L P L Q T P LRG D G PE LV + +D VT L P P V L L AS R E Q G+ + R EA L ++ G VRYDAIWEFGFLEELVGR+ VILQADF ++ V PPTKVY+ADMPIKQL G DEYF R+GWGELP++PLPLAN TEAGW E ++D QV+A+SAMFGMFQ S VGD HWH MVKLHVSEEA+W+HEFV+ +L RFR+KA EAA + + G+ D + +G + EFMCAHVRRQDF+ESC+ YEEE+ +GS RDWV EAL GGGVCWVEE +FR TVDV L+RAP++L VSP FVFATSDD+RFLE KVGNAVPVF L+DV+ AR G EG + G VT EEV AALPAIDVAVCSR LL+LNYFSTYSALIK+KAKA PNF RG+YW DPP LS W+ + WF + ++R
Sbjct: 83 REACYPEGAELALHVWALTAHAREVMPAQDGFVWTHGTYQFHTLTTKHGEVPPLEGWARMWTDPIDTEVRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSWGAYEAADKKRPVFHTLPGARGTAFFGWKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGDFSAFMDARARVLESDSWEGGEALAHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXXTPLLSQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLVTSGLDAPAA-------------PGVPILPTL---------ASVGREE------------------------QGPRGLVEKARGAEAELRARQI---------------PGRPVRYDAIWEFGFLEELVGRNNVILQADFYDLLQDCDVVRPPTKVYLADMPIKQLAGNDEYFGRMGWGELPKVPLPLANATEAGWSELQQMED-QVLAVSAMFGMFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTVGDTHWHAMVKLHVSEEASWVHEFVDGSLERFREKATEAAAAAEQADPGGEGGDEELSDAGGRNPAA-AEFMCAHVRRQDFKESCSCYEEEYRTGSARDWVKEALDGGGVCWVEEHNFRDTVDVLLRRAPAKLDVSPQFVFATSDDARFLEDVKVGNAVPVFTLEDVSRAAAAARGGGE---EGAAAXXGXXXXXXXXXXXXXXXXXXXXXAVTPEEVEAALPAIDVAVCSRGTLLMLNYFSTYSALIKTKAKAQPNFKRGLYWADPPALSTGWSRFCDWFLRKWRR 894
BLAST of mRNA_H-paniculata_contig430.10986.1 vs. uniprot
Match: A0A4P9YSI8_ROZAC (Uncharacterized protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YSI8_ROZAC) HSP 1 Score: 92.4 bits (228), Expect = 3.750e-15 Identity = 120/544 (22.06%), Postives = 210/544 (38.60%), Query Frame = 1
Query: 391 NLRTSLTSLRDACYPEDAWLPLSVWALTAHAKEVLQAQDGFLWTHGTNQLGTLTTVHGEVPPLEGWARM-WAHPSAGEVRLVIPEGLELSKLFYLWLSSTLSRYLGEGVTEEERHIFREN------VFGISLSATGLSEVSGKPLSWEAYAAADGGHPIFHTLAGSRGTAFFGWQWGDFATFMDARARVLDADSWEGVPLLNISGRAAVPS-----WAGSLERFLAEFVHGRGLGILHPNLDGRVSFA---RRLSPLDEGVAEDGASRDSGEASTLQQVEATSEP----ALRGAEDGSTRPERLVESLKDVTKALKQPPVSTLSAYDLMFQRHPDVTHLRLLSYRFMQRLRASASRNEDLEKLWRRPSAPYPN----------------YKDGKYLIYQPQFGMGNQLRALEAGLAVARVLRRILVVPDYISDNGEGIWVRYDAIWEFGFLEELVGRDKVILQADFNEMFNGDSGVD----PPTKVYVADMPIKQLTGADEYFERLGWGELPQIPLPLANTTEAGWGEFVNLDDDQVVAISAMF 1905
+L+ LTSL +A Y + + + +EV+ D F W HG T+ + + LE W+ S E + + + +E+SK ++ ++ ++RY +FREN + GISL +E+ PL W + S G +F W +F + D R V + R P+ W S +R L + + RG +++PN ++SF+ R L + + + + G A T + + ED S R + D+ K P+ L +D+ ++ P V HL +++L + ++L K + + N D KY+I+QPQ G NQLRA E +A A +L+R LV+P S N W +++++ + DK+ +F D VD PP ++ V + L + E+ G + + +N E DD +++ + +F
Sbjct: 97 SLQRLLTSLTNALY-FGVKVDIQINVDGDAGEEVIALVDSFKWPHGD----TIRNIRTDRLGLEKMIMSAWSPASDDEYAIFLEDDIEVSKYYFGFILMNINRY-----------VFRENADVLSKMMGISLYTPRWNEIVHPPLKWIPSDIVQNSTLFMFQIPCSWGAVYFPKVWREFKEYYDWRT--------SEVAVRKFGSRIIAPNAHSNTWRRSWKRHLIDLSYARGWFMIYPNFPDQLSFSTNHREPGKLSKAIQKGEHTGSKGAAGKTSSFTLTKKKLWVYTVSLHEDDSFLKSR--KFWNDLNK-----PIKDLDVFDIYHRKVPSVVHLFETGLGALEQLYHTNRNTKELFKRFYGINTVDGNNHCVLDLFGSLEREEPVSDEKYIIFQPQLGFNNQLRAYEDAIAYAHILKRTLVLPPVQSTNQS--WFSLNSLFD-------INEDKLSQYINFTYF---DEFVDLQLPPPRRMIVLEGLTNFLEPNNVLLEKHGLDSPVKYRIQGSNRYEKDIKRLYGSCDDDILSFNTLF 597
BLAST of mRNA_H-paniculata_contig430.10986.1 vs. uniprot
Match: A0A7S3S429_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S429_EMIHU) HSP 1 Score: 72.4 bits (176), Expect = 4.380e-9 Identity = 102/368 (27.72%), Postives = 150/368 (40.76%), Query Frame = 1
Query: 316 DSMEWRTLPPDINLSIHVVARGNTDNLRTSLTSLRDACYPEDAWLPLSVWALTAHAKEVLQAQDGFLWTHGTNQLGTLTTVHGEVPPLEGWARMWAH----PSAGEVR-----LVIPEGLELSKLFYLWLSSTLSRY--LGEGVTEEERHIFRENVFGISLSATGLSEVSGKPLSW--EAYAAADGGHPIFHT-LAGSRGTAFFGWQWGDFATFMDARARVLDADSWE--------------GVPLLNI-SGRAAVPSWAGSLERFLAEFVHGRGLGILHPNLDGRVSFARRLSPLDEGVAEDGASRDSGEASTLQQVEATSEPALRGAEDGSTRPERLVESLKDVTKALKQ-PPVSTLSAYDLMFQR 1329
D E+ P ++I V A +LR + SL A Y +PL++ V + G W HG +L V L G MW + SAGE+R L + + +E+S LFY WL Y +G+G R + GISL L+E+ + W E + A P F + S G FFG W DF F R R D + G P + + + R+ V W S +RFL +F++GRGL +L+PNL + SF+ A+DG + ++ATS R + T P L V +A+ + P + L +DL +R
Sbjct: 122 DLPEFAVGAPRPKIAIFVFAWRRLASLRRLVDSLLAAEYCGHT-MPLTIMVDGGALAAVREYVRGVEWRHGPLRLVVADDGPAPVASL-GIRGMWINCSSLASAGELRDDEHILPLEDDIEVSPLFYWWLLRAARSYGPIGDGTLMRRRRLV-----GISLYTPRLNEIHYPQVKWLPEVHERA----PAFLLQVPCSWGALFFGSHWRDFLKFYALRVRPPFFDFAQEAAQRGVGKHREPLGDPHVRLPASRSNV--WPRSWKRFLIDFMYGRGLTMLYPNLRLQRSFSTTFMERGGHSAKDGRE---------EAIQATS--LRRDTDPLKTVPLVLASQTNAVQRAMAELPSFARLGVFDLQHER 465 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig430.10986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig430.10986.1 >prot_H-paniculata_contig430.10986.1 ID=prot_H-paniculata_contig430.10986.1|Name=mRNA_H-paniculata_contig430.10986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=903bp MPRMRRTTSANRDPDPVQRLPSPESRKLERTRSSTVNNAKCGRRLRRYWKback to top mRNA from alignment at H-paniculata_contig430:7905..24024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig430.10986.1 ID=mRNA_H-paniculata_contig430.10986.1|Name=mRNA_H-paniculata_contig430.10986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16120bp|location=Sequence derived from alignment at H-paniculata_contig430:7905..24024- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig430:7905..24024- >mRNA_H-paniculata_contig430.10986.1 ID=mRNA_H-paniculata_contig430.10986.1|Name=mRNA_H-paniculata_contig430.10986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5418bp|location=Sequence derived from alignment at H-paniculata_contig430:7905..24024- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |