mRNA_H-paniculata_contig42960.10980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 204 bits (519), Expect = 5.370e-53 Identity = 177/570 (31.05%), Postives = 273/570 (47.89%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTT---PKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHP---ESPENQEGGGLAVETRRGD--DKTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVER-PKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMII 1656
LGG V S+GG Y MI+ DD++R + F++ KS A +A +S+ A P + I +R+D+GG F G+F +E I E TP ++P++NGVAER LGL R++ L ++RLWAEA+++AC+ N + S+ + YE YG P F Y + P K++P+GE C +G S +HP RV + G I E +N++W + P Q + V G+ D ++ XXXXXXXXX + ++ + A R Q V+ D +F A + A+E+P+EL D+ EP ++ EA S W A E++GLI G +T + P+ V+ + K K E GK+ K K RLVA +Q G+ + E S A S ++++ LA + EL H+D+EQA++Q+ +D E+F+K+P G + L+K++YGL QA R + ++ +DL GFEQS + PCV R + EV ++ I
Sbjct: 132 LGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFHANVRADGIPSLIEI--VRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEESDDDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESMDXXXXXXXXXXXXXXXVEVEASPPAAR------RPQHVV------DLADFNT-------AARDAVELPKELIQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAI 677
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.230e-51 Identity = 198/657 (30.14%), Postives = 288/657 (43.84%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTTPKGLR--IGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWH--------PESP---ENQEGGGLA----VETR------RGDDKTIDR----------------SPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALR------------------QLTDDF--------TEQQPSV------------FSTGTRSGRSANRG--------------DGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQV----ALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWT-KVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMII 1656
LGG V S+GG Y MI+ DD++R + F++ KS A +A +S++A G+ + +R+D+GG F G+F +E I E TP ++PQYNGVAER LGL+ R++ L +++LWAEA+++AC+ N + S+ + YE YG P F Y + P K+ P+GE C +G S +HP RV + G I E ++++W P+ P E E GG VET RG T+ R S GS G+ P XXXX P+ Q TD E P V F+ R G G A L V +I +N L + A+E+P+EL D+ EP ++ EA+ S W A E++GLI G +T V+ P V+ + K K E GK+ K K RLVA RQ G+ + E S A S ++++ LA D EL H D+EQA++Q+ +D E+F+K+P G V L+K++YGL QA R + ++ +DL GFEQS + PCV R + EV ++ I
Sbjct: 335 LGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLAS-VRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQRPS-KLFPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEALPSQLPPPQPPLPIEIAEEGGEESDNDVETEVWPLVGRGVAHTLLRNNAAVVPSGEAIDVVESVDAGSVGRSPSPXXXXXXXVPSVSSPAPEFTDGDGQGGQDVGEIESMGPGDQETDPVXXXXXEVEAEASPPVARRPRHVAELADFNNPARENDEVREGRTRAQTRAVNQQSVPGLVATLGPVFATEI------------INSLLAEQRAGDAVELPKELVQDVESEPGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAI 975
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 187 bits (474), Expect = 7.070e-47 Identity = 183/664 (27.56%), Postives = 289/664 (43.52%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAE---HTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWH----------PESPEN--QEGGGLA---VETR------RGDDKTIDRSPRLGSSGQPLQPEE------NXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSAN----RGDGGG---------------------------------------AALQSVLTDDIDLDE-------EEFMAYHEVNILAMQVAL----------------------EMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVER-PKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMII 1656
LGG + S+GG Y MI+ DD++R + F++ KS A +A ++++A + P + I +R+D+GG F G+F +E I E TP +PQYNGVAER LGL+ R++ L +++LWAEA+++AC+ N + S+ ++ YE YG P F Y R P K++P+GE C +G S +HP RV + G I E ++++W P P +EGG + VET RG T+ + + S + + E + LA + P + G G + GD GG A L T + DE + A ++ ++ + +L E+P+EL D+ P ++ EAQ S + W+ A E++GLI G +T + P V+ + K K E GK+ K K RLVA +Q G+ + E S A S ++++ LA + EL H D+EQA++Q+ +D E+F+K+P G V L+K++YGL QA R + ++ ++L GFEQS + PCV R + EV ++ I
Sbjct: 252 LGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGPISATELVYTLMSEQRAGDETELPKELVQDVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI 910
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: UPI00202469D1 (DDE-type integrase/transposase/recombinase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI00202469D1) HSP 1 Score: 176 bits (447), Expect = 1.780e-43 Identity = 151/566 (26.68%), Postives = 253/566 (44.70%), Query Frame = 1
Query: 7 GPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLLRVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTV----------RVFNVKTGHIVERQNISWHPESPENQEGGGLAVETRRGDDKTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDG-GGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKY--RKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKV-GDGEVFAVMII 1656
GPM V + GG YV+ + DD SR+ V +K KS + + E + +I +R+D GG +F + + GI +LTPP TPQ NGV+ERR L + + M T+ W A+ A N + + S+E YE +G L +L + Y++K+ P+ K+ P+ E+C+ +G +P T+ ++F K G +E++ +S +E G VE D+ + P G++ +EN P ++ DD E V + RS R+ + + G L+ +L D+ EP N+ EA A P+ + W A + E+ + + VWT + P ++ + I K+K DG V K RLVA RQ++G+ + E S S ++ML +AA D+E+ +DV+ A+L + +E+++ P + K V L +++YGLVQA R W+++ + GF Q++ CV++KV G F ++ +
Sbjct: 176 GPMSVEARGGYRYVLTLTDDLSRYGYVYLMKHKSETFEKFKEFQNEVENQRDRKIKFLRSDRGGEYLSHEFGTHLRKCGIVSQLTPPGTPQRNGVSERRNRTL-LDMVRSMMSLTDLPLS-FWGYALETATFTLNRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCDAYVKKLQPE-KLEPKSEKCVFIG----YPKETIGYTFYLRSEGKIFVAKNGSFLEKEFLS--------KEVSGRKVEL----DEVLPLEPENGAT------QENVPEV--------PAPTREEVNDDDHETSDQVATELRRSTRTRSAPEWYGNPVLEIMLLDN----------------------------------GEPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKVSGSSVAFLILYV 672
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 176 bits (445), Expect = 4.010e-43 Identity = 159/525 (30.29%), Postives = 249/525 (47.43%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTT---PKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHP---ESPENQEGGGLAVETRRGD--DKTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVER-PKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYG 1521
LGG V S+GG Y MI+ DD++R + F++ KS A +A +S++A P + I +R+D+GG F G+F +E I E TP ++P++NGVAER LGL+ R++ L ++RLWAEA+++AC+ N + S+ + YE YG P F Y + P K++P+GE C +G S +HP RV + G I E +N++W + P Q + V G+ D ++ XXXXXXXXX + ++ + A R Q V+ D +F A + A+E+P+EL D+ EP ++ EA S W A E++GLI G +T + P+ V+ + K K E GK+ K K RLVA +Q G+ + E S A S ++++ LA + EL H+D+EQA++Q+ +D E+F+K+P G + L+K++YG
Sbjct: 482 LGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEESDDDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESMDXXXXXXXXXXXXXXXVEVEASPPAAR------RPQHVV------DLADFNT-------AARDAVELPKELIQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYG 982
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 175 bits (443), Expect = 7.670e-43 Identity = 188/659 (28.53%), Postives = 287/659 (43.55%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAE---HTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHPESPENQE-----------------------------GGGLA-----------------VETRRGDDKT--------------------------IDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVAL----------------------EMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWT-KVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMII 1656
LGG V S+GG Y MI+ DD++R + F+K KS A A +S++A P + I +R+D+GG F G+F +E I E TP +PQYNGVAER LGL+ R++ L +++LWAEA+++AC+ N + S+ + YE YG P F Y R P K++P+GE C +G S +HP RV + G I E ++++W + G G+A VE+ ID + +G P +E XXXXXXXXX R + TE P TG R A D AA ++ + + A ++ ++ + + E+P+EL D+ EP ++ EAQ S + W+ A E++GL+ G +T V+ P V+ + K K E GK+ K K RLVA +Q G+ + E S A S ++++ LA + EL H D+EQA++Q+ +D E+F+K+P V L+K++YGL QA R + ++ ++L GFEQS + PCV R + EV ++ I
Sbjct: 438 LGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEVLPSQLXXXXXXXXXXXXXXXXXXXXXXXXXEVWPLVGRGVAHTLLKREAVPPGTEVVEVESXXXXXXXXXXXXXXXXXXXXXXXXXSVSSPVPEIDVNSGEIETGDPGGDDEXXXXXXXXXXXXXXXXXXRPVE---TEASPP---TGRRPRHVAELADFNTAARENDEVRE-GRTRAQTRAVNQQSVPGLMATIGPISGTEVLYALLSEQRAGDETELPKELVQDVESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI 1084
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 173 bits (438), Expect = 3.310e-42 Identity = 152/552 (27.54%), Postives = 247/552 (44.75%), Query Frame = 1
Query: 7 GPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLLRVKTIALMQDQTEGGSE-RLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIP---KHKMVPRGEECIMLGISHNHPSGT--VRVFNVKTGHIVERQNISWHPESPENQEGGGLAVETRRGDDKTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGT----RSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKY--RKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRK 1620
GPM V S+GGS Y + +DDY+R+ V FIK K A + ++ T G + +RTD+GG +F + E GI H+LT P P NGV+ER L T ++M + G + WAEA+N A + N S T+S++ + YE + + L F + IP + K + + + +G +P GT ++++ T + ++I + + + G D P++ P E +R ++ ++ + T ++ + TG R R+ +R D + + D++ D E PV + W S EW+ A + E + L+ W V PK K +V + + K K DG VE+ K RLVA Q +GI +QE S TS + +L +A I DWE+ +DV+ A+LQ +D+ IF+K P Y ++ P V L++++YGL QA RCW+ + L G+ +S+A PC++ K
Sbjct: 493 GPMSVNSIGGSRYFVTFIDDYTRYTYVYFIKHKDEVLAKFKEFVNLATNLTGKSVKTLRTDNGGEYCSKEFESFLKEKGIVHQLTVPYNPAQNGVSERMNRTLVESTRSMM---SHGKTPVEFWAEAINTAVYLRNRSPTTSLK-EITPYECLFKQKPDVSNLRVFGCEAFAH--IPEKQRKKFDEKSRKAVFIG----YPEGTKGYKLYDPSTRKFIRSRDIVFVEGKFHDFKDGCSGKTCTDFYIPVDDVIPQVEIQDVPAVVIEGDHNELVDEENEREEVHVQPVG--ATYEENFMRETGNLGDKRQRRAPSRFDD-----KCYVADNLTADINE--------------------------PVHIQEAWTGDHSVEWKE---ATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIK 998
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC) HSP 1 Score: 172 bits (436), Expect = 4.330e-42 Identity = 152/564 (26.95%), Postives = 245/564 (43.44%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLLRVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVG-----YMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHPESPENQEGGGLAVETRRGDD---KTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVE-PKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRK--FPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMI 1653
L GPM+V + G YV +++DD+SR ++ ++ K+ A L+ I T G ++ +R+D GG DGD E GI H LT TP+ NG AER+ GLL L++ G + W E VN AC + N + TS I GN+ E G + +L RT+G Y+ KI + K+ + EE ++G + + +RV KT ++ +S H + Q+ T DD ID ++ DF E+ + + N + + + +L E Y E++ VAL L D E P+N EA + E W+ A E E + L + W E P ++ V + +K +GK+++ K RLVA Q GI ++ + S ++++ L DW + +D+ AYL +D I++K P + K V L K++YGL Q+GR W++K+ DL + GF++ A C++ K +G + + I
Sbjct: 48 LCGPMQVETPSGKRYVHVVIDDFSRMCWIRLLRNKAEAKVTLREIITFIETQSGRKVKTVRSDRGGEFVDGDLQKYFTEKGIKHYLTDKYTPEMNGTAERKNGLLMAAARCLLRQA--GLPDTFWGEMVNTACYLQNRTPTS-ILGNITPVEAFTGEKPSVAHL---RTIGTKCFVYIPKI-KRQKLDEQAEEHTLVGYDISERNYRLRVG--KTNRVI----VSTHVKFTNIQQELNKMKYTNLEDDLLDNEIDEEIKMNQE------------------------TSTNKQYDFKEELNKLLINSNIQKHNKNNEENTNVEKEPIQPRPRNLRNLERKDYAELSNFK-DVAL-----LSTDRISEIPRNVKEALSGAEANEWKQAMETEYKSLEENKTWKLCELPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILIALGVQLDWHMHQMDMVTAYLNGTLDTMIYMKQPEGFIKEGSENLVCDLQKSLYGLKQSGRLWNIKIDCDLRKNGFKRCRADWCIYVKQENGVIIVIAI 568
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 172 bits (436), Expect = 4.490e-42 Identity = 176/648 (27.16%), Postives = 281/648 (43.36%), Query Frame = 1
Query: 49 MIIVDDYSRFQAVKFIKKKSHATAALQSYIAE---HTTPKGLRIGNIRTDSGG--FDGDFHLKMDEHGINHELTPPNTPQYNGVAERRLGLL-------RVKTIALMQDQTEGGSERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWH----------PESPEN--QEGGGLA---VETR------RGDDKTIDRSPRLGSSGQPLQPEE------NXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSAN----RGDGGG---------------------------------------AALQSVLTDDIDLDE-------EEFMAYHEVNILAMQVAL----------------------EMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVER-PKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRKFPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMII 1656
MI+ DD++R + F++ KS A +A ++++A + P + I +R+D+GG F G+F +E I E TP +PQYNGVAER LGL+ R++ L +++LWAEA+++AC+ N + S+ ++ YE YG P F Y R P K++P+GE C +G S +HP RV + G I E ++++W P P +EGG + VET RG T+ + + S + + E + LA + P + G G + GD GG A L T + DE + A ++ ++ + +L E+P+EL D+ P ++ EAQ S + W+ A E++GLI G +T + P + V+ + K K E GK+ K K RLVA +Q G+ + E S A S ++++ LA + EL H D+EQA++Q+ +D E+F+K+P G V L+K++YGL QA R + ++ ++L GFEQS + PCV R + EV ++ I
Sbjct: 1 MIVKDDFTRRIWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGPISATELVYTLMSEQRAGDETELPKELVQDVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI 643
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA) HSP 1 Score: 171 bits (433), Expect = 1.480e-41 Identity = 162/561 (28.88%), Postives = 251/561 (44.74%), Query Frame = 1
Query: 1 LGGPMRVTSLGGSSYVMIIVDDYSRFQAVKFIKKKSHATAALQSYIAEHTTPKGLRIGNIRTDSGG-FDGDFHLKM-DEHGINHELTPPNTPQYNGVAERRLGLLRVKTIALMQDQTEGGS--ERLWAEAVNYACDITNMSCTSSIEGNVISYEKCYGTTAPLEYL*TFRTVGYMRKIIPKH----KMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHPESPENQEGGGLAVETRRGDDKTIDRSPRLGSSGQPLQPEENXXXXXXXXXQDRPDLALRQLTDDFTEQQPSVFSTGTRSGRSANRGDGGGAALQSVLTDDIDLDEEEFMAYHEVNILAMQVALEMPEELRGDLPVEPKNHWEAQASPEWEHWQSAEEVEMQGLIDKGVWTKVERPKNKLVVSTMMIHKRKIGEDGKVEKCKFRLVAHRNRQIKGIHFQEASSSAPAATSTKMMLWLAAIEDWELRHVDVEQAYLQTPIDQEIFIKIPVKYRK--FPGAVGCLDKAVYGLVQAGRCWSMKVTADLTEKGFEQSHAGPCVFRKVGDGEVFAVMI 1653
L GPM+V S+GG YV ++VDDYSR+ V+FI+ KS A+ + + + T KG + IR+D GG F K +E GI H+ + P TPQ NGV ER+ L+ + Q GG+ + WAEA+N AC I N G YE G T L Y FR G I+ K R +E I LG S N S RVFN ++ ++E N+ + S +AV I SP + + P E +D+ + ++TD E + V T+ R+ + D G + T I L+ ++ ++ + A +EP+NH EA +W + E E++ + VW V P+ VV T I K K + G + + K RLVA Q++G+ F E + S ++ L +A I ++++ +DV+ A+L + +E+++ P + P V L KA+YGL QA + W +T L + G+ + +F + E+ V I
Sbjct: 546 LMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKGS-LKCIRSDHGGEFQNKVMTKFCNEQGIAHQFSAPRTPQMNGVVERKNRTLQ----EMAQAMIHGGNIPVKFWAEAINTACYIINRVYMRKALGKT-PYELWKGKTPNLSY---FRVFGCRCFILNDKDQLGKFDSRSDEGIFLGYSGN--SSAFRVFNFQSKMVMESVNVVFDDRS--------IAV---------IGDSP-VFHEAESKTPAEEEVDGTSEKDEDKEE----EMTDKVVEVRHPV----TQVHRNHSSSDLIGDITEGRKTRGIKLNFKQMVSMAIIQFECFVSA------------IEPQNHLEALEDADWI---ISMEEELEEFVRNDVWELVPLPEGVNVVGTKWIFKNKTDDAGSIVRNKSRLVAQGYSQVEGVDFDETFAPVARLESIRLFLGIACILNFKVHQMDVKSAFLNGILQEEVYVAQPKGFEDPTHPDYVYKLKKALYGLKQAPKAWYEHLTKFLIDTGYVRGTVDKTLFILEKEDEIMMVQI 1054 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42960.10980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42960.10980.1 >prot_H-paniculata_contig42960.10980.1 ID=prot_H-paniculata_contig42960.10980.1|Name=mRNA_H-paniculata_contig42960.10980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp MRKIIPKHKMVPRGEECIMLGISHNHPSGTVRVFNVKTGHIVERQNISWHback to top mRNA from alignment at H-paniculata_contig42960:7..1710- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42960.10980.1 ID=mRNA_H-paniculata_contig42960.10980.1|Name=mRNA_H-paniculata_contig42960.10980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1704bp|location=Sequence derived from alignment at H-paniculata_contig42960:7..1710- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42960:7..1710- >mRNA_H-paniculata_contig42960.10980.1 ID=mRNA_H-paniculata_contig42960.10980.1|Name=mRNA_H-paniculata_contig42960.10980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig42960:7..1710- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |