prot_H-paniculata_contig42941.10977.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42941.10977.1
Unique Nameprot_H-paniculata_contig42941.10977.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length227
Homology
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 94.7 bits (234), Expect = 8.850e-19
Identity = 80/238 (33.61%), Postives = 111/238 (46.64%), Query Frame = 0
Query:    1 HWNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLIS----TRRA---IDTSGKSLIYSANKASLGGTGGGEPYFQLDGL-QRMLHCKAHRFAVPQKTDKRATWAAERLYVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYI--GEYITPKGFKIGAIRTDNGGEFHG-DFDLKLDEHGIS 227
            HWN+DTGA+ HMT     F  Y+P +      +A+ T++ +EG G +VL     G KS V  L    HVP L  NL+S    TR     I  +G  + +  +   + G    EP    D +    L  K H   +P+   KR T   E +Y DL GPM V +L G  Y +  +   S    V   + KSDA AA + +    E + P G KI   + D GGE+ G +F      HGI+
Sbjct:  310 HWNTDTGASRHMTPHRHWFNVYSPHI--VPIRLADNTVIYSEGIGTVVLEPEVEGEKSTVVELLDTLHVPALRNNLLSPYHLTREKGFKISITGSDVTFCQDDKLVMGMKR-EPGPPTDPICPPCLAGKQHHHNIPRGPSKRRTQLLELVYSDLKGPMPVATLEGYRYWVTFICSTSDIWGVSLLKHKSDAFAAFKQFKVHAENVHP-GLKIVEFQEDKGGEYMGKEFTDFCANHGIT 543          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A438GW77_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GW77_VITVI)

HSP 1 Score: 82.0 bits (201), Expect = 2.410e-14
Identity = 68/222 (30.63%), Postives = 107/222 (48.20%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIY-----SANKASLGGTGGGEPYFQLDGLQRMLHC--KAHRFAVPQKTDKRATWAAERL---YVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D+GA+ H T      ++Y     G +  +A+G+ +   G G +  R+S P     V +L +V H+P+L RNLIS  + +D  G ++++     ++   SL               +R+ H   K  +  V +KT +     AE+L   + DL GP  V SLGGS Y +  +DD SR   V F + KSD     + +     T  G K+  +R+DNGGE+
Sbjct:  177 WVLDSGASFHTTPHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPN--GSVWLLEKVRHIPDLRRNLISVGQ-LDDEGHAILFVGVADASTDTSLW-------------HRRLGHMSEKGMKMFVKRKTTRIEDTEAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFETFKKWKAMVETETGLKVKCLRSDNGGEY 379          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A6L2L6N2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L6N2_TANCI)

HSP 1 Score: 80.5 bits (197), Expect = 8.850e-14
Identity = 60/215 (27.91%), Postives = 95/215 (44.19%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQLDGLQRMLHCKAHRFAVPQKTDKRATWAAERLYV---DLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D+G + HMT D +   ++     GT+ +  N  +    G+G           + R   ++RV +V  LG NL S R+  D S   + +  +   +           L+G+  +  C   +        K      E+LY+   DL GPMRV S+ G  Y+++I+DDYSRF  VKF R K +    +  ++          +  IRTDNG +F
Sbjct:  602 WYLDSGCSKHMTKDRSQLINFVQKFLGTV-KFGNDHVAKIMGYG---------DYQIRNVTISRVYYVEGLGHNLFSVRQFCD-SDLEVSFHQHTCFIR---------NLEGVDLLTVCAIGKSTKKTHKPKSKDTNQEKLYLLHMDLYGPMRVESVNGKKYILVIMDDYSRFTWVKFLRSKDETPTFIIMFLKMIQVRLNGPVRRIRTDNGTKF 796          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI)

HSP 1 Score: 77.8 bits (190), Expect = 6.690e-13
Identity = 72/234 (30.77%), Postives = 111/234 (47.44%), Query Frame = 0
Query:    5 DTGATDHMTSDETGFEDYTPALPGTI--CEIA----NGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQLDGLQR---------------MLH--CKAHRFAVPQK--TDKRATWAAERLYVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            D+ AT H+   E  FE+     P  I   E A     G++  AEG G + L+V     K  V + N V + P+  RNL+S  + I+  G+ L +    A +   G  EP   ++ L++               + H  C      VP K    +++    E ++ DL GPM V S+GGS Y+M ++DDYSR   V F + K +A   ++++I +    KG KI   R+DNG E+
Sbjct:   96 DSAATHHVCRHEEWFENLKRIKPEPIGTAEAAVYQDEGSLT-AEGIGDIKLQVKINHKKYEVILPN-VYYAPKCRRNLMSVAQ-IEKKGRILEFKNGLARVA-DGKTEPSKSIEELRQKGFVRGLDYHKTDSDLCHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A699H1P6_TANCI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699H1P6_TANCI)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-12
Identity = 64/222 (28.83%), Postives = 96/222 (43.24%), Query Frame = 0
Query:    5 DTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIY----------SANKASLGGTGGGEPYFQLDGLQRMLHCKAHRFAVPQKTDKRATWAAERLYV---DLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            D+G + HMT D +   ++     GT+ +  N  +   +G+G           K R   ++RV  V  LG NL S  +      KS ++          + N+ +  G   G P  + +       C   +        K      E+LY+   DL GPMRV S+ G  Y+++IVDDYSRF  VKF R K +A   +  ++          +  IRTDNG EF
Sbjct:  639 DSGCSKHMTGDRSQLINFIQKFFGTV-KFWNDHVAKIKGYG---------DYKIRNVTISRVYFVEGLGHNLFSASKT-----KSWLWHRRLSHLNFGAINQLARQGLVIGLPKLKFEKEHLCSACAMGKSKKKSHKPKSEDTNQEKLYLLHMDLCGPMRVESVNGKKYILVIVDDYSRFTWVKFLRSKDEAPNFIIKFLKMIQVRLKVPVRCIRTDNGTEF 845          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A438GLU8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GLU8_VITVI)

HSP 1 Score: 76.3 bits (186), Expect = 2.320e-12
Identity = 67/225 (29.78%), Postives = 102/225 (45.33%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQ--LDGLQRMLHCKAHRFAVPQKTDKRA--------TWAAERL---YVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D GA+ H T      ++Y     G +  +A+G+ +   G G +  R+S P     V +L +V H+P+L RNLIS  + +D  G ++++      +  T G     +    G   M  C     AV     ++         T  AE+L   + DL GP  V SLGGS Y +  +DD SR   V F + K D     + +     T  G K+  +R+DNGGE+
Sbjct:  286 WVLDLGASFHTTPHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPN--GSVWLLEKVRHIPDLRRNLISVGQ-LDDEGHAILFVGGTWKV--TKGARVLARGKKTGTLYMTSCPRDTIAVADARKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKYDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 502          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A7N2MUY1_QUELO (Uncharacterized protein n=2 Tax=rosids TaxID=71275 RepID=A0A7N2MUY1_QUELO)

HSP 1 Score: 75.5 bits (184), Expect = 4.380e-12
Identity = 64/225 (28.44%), Postives = 102/225 (45.33%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSAN--KASLG------GTGGGEPYFQLDGLQRMLHCKAHR-----FAVPQKTDKRATWAAERLYVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D+GA+ H T      ++Y     G +  +A+G  +   G G +  R+  P     + +L ++ H+P+L RNLIS  + +D  G ++++     K + G      G   G  Y        +    A +     F    +T K      E ++ DL GP  V SLGGS Y +  +DD SR   V F + KSD     + ++    T  G K+  +R+DNGGE+
Sbjct:  286 WVLDSGASFHTTPHREIIQNYVAGDFGKVY-LADGLALDVVGMGDV--RILLPN--GSIWLLEKIRHIPDLRRNLISVGQ-LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSSPRDTIAVANARKQKNVSFLKTGRTPKAGK--LELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFETFKKWMAMVETETGLKVKCLRSDNGGEY 502          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A6L2LYL7_TANCI (Uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LYL7_TANCI)

HSP 1 Score: 75.1 bits (183), Expect = 5.200e-12
Identity = 57/213 (26.76%), Postives = 94/213 (44.13%), Query Frame = 0
Query:    5 DTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQLDGLQRMLHC----KAHRFAVPQKTDKRATWAAERLYVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            D+G + HMT +     ++     GT+ +  N    P  G+G LV             ++ RV +V  L  NL S  +  D     + +  +   +  + G +      G+  +       KA R +   KT   +    + L++DL GPMRV S+ G+ YV++IVDDYSR+    F R K +    L  ++    +    ++  +RTD G EF
Sbjct:  162 DSGCSKHMTGNIKLLTNFVEKFLGTV-KFRNDQFAPILGYGDLV---------QGAVIIKRVYYVERLNHNLFSVDQFCDAD-LEVAFRKSTCYIRDSKGNDLLTGSSGIDHLCSSCELGKAKRKSFQTKTTPSSKRRLQLLHMDLCGPMRVESINGNKYVVVIVDDYSRYTWTHFLRSKDETPKVLIDFLRLVQSGLYTQVRIVRTDKGTEF 363          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A6L2KBS8_TANCI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KBS8_TANCI)

HSP 1 Score: 75.1 bits (183), Expect = 5.920e-12
Identity = 56/212 (26.42%), Postives = 91/212 (42.92%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQLDGLQRMLHCKAHRFAVPQKTDKRATWAAERLYVDLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D+G + HMT D +   ++      T+    N       G+G  +        +  + + + V +V  LG NL S  +  D   +S +Y+   + +  +     +            K  + +   K         E L++DL GPMRV S+ G  Y+++IVDDYSRF  V F   K +    ++ +I +       K+  IRTDNG EF
Sbjct:  341 WIVDSGCSKHMTGDRSLLRNFIEKFMSTV-RFGNDNFAAITGYGDYI--------QDNITICH-VYYVEGLGHNLFSVGQFCDGGHESNLYTIFISDMAASS--SVFLMSKATSTKSWGKRKKASHLLKLVSSDNSKLELLHMDLCGPMRVASINGKKYILVIVDDYSRFTWVYFLHSKDETLEIIKKFIAQAHLNYKAKVYKIRTDNGTEF 540          
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Match: A0A6L2LW48_TANCI (Reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LW48_TANCI)

HSP 1 Score: 75.1 bits (183), Expect = 6.120e-12
Identity = 61/215 (28.37%), Postives = 91/215 (42.33%), Query Frame = 0
Query:    2 WNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLRVSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLGGTGGGEPYFQLDGLQRMLHCKAHRFAVPQKTDKRATWAAERLYV---DLDGPMRVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGFKIGAIRTDNGGEF 213
            W  D+G + HMT D +    +     GT+ +  N  +     +G           K    M++RV  +  LG NL S  +  D S   + +  +   +           LDG+  +  C   +        K      E+LY+   DL GPMRV S+ G  Y+++IVDDYSRF  VK  R K +A   +  ++          +  IRTDNG EF
Sbjct:  635 WYLDSGCSKHMTGDRSQLIKFVHKFLGTV-KFRNDHVAKIMNYG---------DYKIGNVMISRVYFMEGLGHNLFSVGQFCD-SYLEVAFRQHTCFIR---------NLDGVDLLTACAMGKSTKKSYKPKSKDTNQEKLYLLHMDLCGPMRVESVNGKKYILVIVDDYSRFTWVKLFRSKDEAPDFIIRFLKMIQVRLKVPVHRIRTDNGTEF 829          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42941.10977.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284S1T9_ARMOS8.850e-1933.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A438GW77_VITVI2.410e-1430.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2L6N2_TANCI8.850e-1427.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K9E1_LASNI6.690e-1330.77Retrovirus-related pol polyprotein from transposon... [more]
A0A699H1P6_TANCI1.360e-1228.83Integrase catalytic domain-containing protein (Fra... [more]
A0A438GLU8_VITVI2.320e-1229.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A7N2MUY1_QUELO4.380e-1228.44Uncharacterized protein n=2 Tax=rosids TaxID=71275... [more]
A0A6L2LYL7_TANCI5.200e-1226.76Uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6L2KBS8_TANCI5.920e-1226.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6L2LW48_TANCI6.120e-1228.37Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 128..226
e-value: 3.3E-9
score: 38.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 124..227
score: 11.602
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 134..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42941contigH-paniculata_contig42941:841..1707 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42941.10977.1mRNA_H-paniculata_contig42941.10977.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42941 841..1707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42941.10977.1 ID=prot_H-paniculata_contig42941.10977.1|Name=mRNA_H-paniculata_contig42941.10977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
HWNSDTGATDHMTSDETGFEDYTPALPGTICEIANGTIVPAEGWGCLVLR
VSQPGVKSRVAMLNRVAHVPELGRNLISTRRAIDTSGKSLIYSANKASLG
GTGGGEPYFQLDGLQRMLHCKAHRFAVPQKTDKRATWAAERLYVDLDGPM
RVTSLGGSSYVMIIVDDYSRFQAVKFTRKKSDATAALQSYIGEYITPKGF
KIGAIRTDNGGEFHGDFDLKLDEHGIS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf