mRNA_H-paniculata_contig4291.10971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4291.10971.1
Unique NamemRNA_H-paniculata_contig4291.10971.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: D8LU90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 5.520e-88
Identity = 130/235 (55.32%), Postives = 163/235 (69.36%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTME-KEGWPMVDSLKTRACDASAIASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGR----------EEPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYCSPDEISGDVWRFTDLKPKVVAADQY 672
            SP   +  + A+S YPVGPPY++HPRDWARV+ LWVA+ P+V+  HPGILAEMYG+CI AAHIGLRHRVAYGLMVSD  M  KEGWP+VD + T  CD  ++  +R  LPP++HYCQMYRVGT+M+GKRH+ H  FF C +D+ + PP  YL  PM +VR+HP R           E V A    RQGY MC++LR MN A   +K RYC   ++SG V RFTDL  + + AD+Y
Sbjct:  254 SPARAVSTEEAISGYPVGPPYMMHPRDWARVLDLWVALSPKVHKGHPGILAEMYGFCIAAAHIGLRHRVAYGLMVSDAGMPGKEGWPLVDQMGTSVCDPESVDHRRGSLPPIVHYCQMYRVGTFMWGKRHRTHQTFFGCHSDSLELPPPDYLAGPMAEVRVHPRRGRAQLGEQAEPERVPAVTGMRQGYAMCAVLRAMNEALVKYKYRYCERGDVSGGVRRFTDLSREQLDADEY 488          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A836CDP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.330e-43
Identity = 92/234 (39.32%), Postives = 121/234 (51.71%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEG--WPMVDSLKTR-AC-------DASAIASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHP-GREEPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYCSPDEISGDVWR---FTDLKPKVVA 660
            SP   +    A   YPVGPPYL H RD A +   WV      Y  HPGIL+EMY +CI AAH+ L H V    MVSDP    E   W +V++L     C       DA   ++    LP + HYC ++R G YM+GKR +  H  F+C A    EPP H   +   +V++HP  R E VT   A R  +M+C+L R +N A   F+Q  C  +E +  + R    TDL P V+A
Sbjct:  192 SPALSVPLDQAAKHYPVGPPYLAHVRDMAALADKWVEFVARTYEGHPGILSEMYAFCIAAAHLRLPHHVIRSYMVSDPNNRDEDAPWALVEALSDEDVCRALGPPLDALPASAPIPTLPVVAHYCHVFRAGLYMFGKRRRGLHGVFACDAQYLAEPPPH---AGALRVKVHPPDRVEQVTRRTAVRNAFMVCALTRLLNEALLDFRQARCGAEEFAAGLSRVRPLTDLSPAVLA 422          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S1D2M9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2M9_CYCTE)

HSP 1 Score: 122 bits (307), Expect = 1.380e-29
Identity = 70/206 (33.98%), Postives = 104/206 (50.49%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKTRACDASAIASQREH----LPPLLHYCQMYRVG-TYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGREEPVTADRAT--RQGYMMCSLLRYMNLAQAAFKQRYC 597
            SP   + K+     YP GPPYL   +D   +  +W    P+VYA++P +LAEMY +CI AAH+GL+H++   +MVS+     EGWP+VD +     D         H    LP ++H CQ Y VG  + +GKR K     + C    F EPP   +       +  P  +E    + A   R+ +M+C L R +N A   +K++ C
Sbjct:  156 SPTKLVTKEDGALFYPAGPPYLATVKDMYNIAVMWTEFAPKVYAQYPHLLAEMYAFCIAAAHLGLKHQLVDSIMVSNTEASGEGWPLVDKIPND--DICEFGKNPRHEVYALPSVVHLCQRYSVGDAWFFGKR-KVPADIYECETPLFTEPPRDVVN--QYDYKWPPNAKEKTALEPAILKREAFMVCYLTRLVNDAATYYKKQSC 356          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S4N1U4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1U4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.950e-29
Identity = 72/205 (35.12%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKTRACDASAIAS---QREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGREEPVTADR--ATRQGYMMCSLLRYMNLAQAAFKQRYCS 600
            SP  ++ K      YPVGPPYL   RD   +   W    P V+A++P +LAEMY YCI AAH+ L H+    LMVS+     EGW  V+ +      A  +      +  LP ++H CQ Y VG +++ KR K  H FF+C     + PP    +    K +I P  +  V      A    +MMC  + Y+N A   FK++ CS
Sbjct:  164 SPALRVSKDDGRDFYPVGPPYLGTARDMHAIATKWSEFAPRVHAQYPHLLAEMYAYCIAAAHLKLPHQKINSLMVSNSGTGGEGWSFVEKIPPSEVCAFMVDGPDHSKYALPSVMHLCQRYIVGPWLFAKR-KMPHDFFTCEHQLLEVPPPDLAK--RFKYKIKPAEQVKVDISEKVAHEDAFMMCGTIGYLNEAGTYFKRKGCS 365          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S2GWL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWL2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.030e-29
Identity = 64/207 (30.92%), Postives = 107/207 (51.69%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSL-KTRACDASAIASQREH-LPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGREEPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYCSPDEIS 615
            SP   + +      YP GPPY+   RD   +   W    P ++  +P +LAEMY YC+ AAH+ L H++   +MVS      EGWPMV+++ +   CD +  A   ++ +P  +HYCQ Y VGT+++ KR K  H  F+C +  F  PP+  + +   K       ++ +T        +++C+LL  +  A   FK+ +C  + ++
Sbjct:  338 SPAKDVVRAEGALHYPGGPPYIATARDMYAISIKWAEFAPRLHEGYPHLLAEMYAYCVAAAHLRLPHQLVDSIMVSSQQTGGEGWPMVNTIPEDEVCDVAINADHEKYPIPSTVHYCQRYSVGTWLWAKR-KVPHDIFTCESPIFASPPSTDVINLKHKFENRGDVKKEMTDKEWKHNAFVVCALLNGVAEAMEFFKEMHCDKESVN 543          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S4JEG4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JEG4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.870e-28
Identity = 72/205 (35.12%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKTRACDASAIAS---QREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGREEPVTADR--ATRQGYMMCSLLRYMNLAQAAFKQRYCS 600
            SP  ++ K      YPVGPPYL   RD   +   W    P V+A++P +LAEMY YCI AAH+ L H+    LMVS+     EGW  V+ +      A  +      +  LP ++H CQ Y VG +++ KR K  H FF+C     + PP    +    K +I P  +  V      A    +MMC  + Y+N A   FK++ CS
Sbjct:  338 SPALRVSKDDGRDFYPVGPPYLGTARDMHAIATKWSEFAPRVHAQYPHLLAEMYAYCIAAAHLKLPHQKINSLMVSNSGTGGEGWSFVEKIPPSEVCAFMVDGPDHSKYALPSVMHLCQRYIVGPWLFAKR-KMPHDFFTCEHQLLEVPPPDLAK--RFKYKIKPAEQVKVDISEKVAHEDAFMMCGTIGYLNEAGTYFKRKGCS 539          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S0CC93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CC93_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.740e-27
Identity = 69/202 (34.16%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    1 SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKT-RACDASAIASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGREEPVTADRATRQ-GYMMCSLLRYMNLAQAAFKQRYCS 600
            SP  ++ +  ++S Y VGPPY+   RD   +   W    P+V+  +P +LAEM+ YC+ AAH  L H +   LMVS  T   EGWP++ ++ +   C+        + +P ++H+CQ Y  G + +GKR K    FF+C       PP + L S   KV +   +E+ V   RA +Q  +M+C L  ++N A   FK+++CS
Sbjct:  109 SPALEVTESESLSFYTVGPPYIATARDMYSISVKWAEFAPKVHNEYPHLLAEMFAYCLAAAHTKLPHTLVDSLMVSC-TGCAEGWPLLGNIPSDEVCEFPGSMKTGDRVPHVIHFCQRYMAGEWFFGKR-KLPKDFFTCEHPLLATPPKN-LASIDYKV-LPSKKEKVVIGTRAAKQEAFMICGLTVFLNDAAEFFKEKHCS 306          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S3DXN7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXN7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.390e-27
Identity = 70/195 (35.90%), Postives = 111/195 (56.92%), Query Frame = 1
Query:   43 YPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPT--MEKEGWPMVDSLK-TRACD-ASAIA---SQREHLPPLLHYCQMYRVGT-YMYGKRHKNHHHFFSCGADAFQEPPAHYLESPMGKVRIHPGRE-EPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYCS 600
            YPVGPPYL    D  R+ + W A  P+V+A++P +LAEM+ +CI AAH+ L H++   LMVSD T  ++ EGW +VD+++ T+ C  A A+    +   ++P ++H CQ Y +G+ + + KR       + C    F EPP   L + +   ++ P  E +PV    A R  +M+C + R +N A   +K+  CS
Sbjct:  296 YPVGPPYLATVVDMYRISEKWTAYVPKVHAQYPHLLAEMFAFCIAAAHLELPHQLISSLMVSDVTGGVDLEGWSLVDAIEPTQVCSTAKALVGYPAPTANVPQVVHMCQRYGLGSEWFFTKRKIPSDSLYDCETPLFAEPPDD-LATKLDFKQLPPAYERKPVDPGEAKRMSFMLCYVYRLLNDAATFYKKNACS 489          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S2LB62_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LB62_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.280e-26
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 1
Query:   37 SSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEK-EGWPMVDSLKT-RACDASAIASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHYLES------PMGKVRIHPGREEPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYC 597
            ++YP GPPY+   +D   ++  W  + P V+  +  +L EMYG+ +GAAH+GL H +A   M+S   + + EGW ++D+LK    C+ S +    + LP  +H+CQ Y +G +  GK ++    F  C      EPP    +       P GK     G +EPV  + A R+ +M+C L+   N A A FK   C
Sbjct:  257 NNYPGGPPYMATGKDMWSIVSAWTELVPNVHHVYKHLLGEMYGWSLGAAHVGLPHTLAESFMISATQIGRGEGWQLIDALKDDEVCEYSVMKEYEDKLPYTMHFCQNYWLGKWFIGK-YRLDSDFLKCDKTLLMEPPKDIAKQFDFYIKPGGKPY---GVKEPVRPEVAKREAFMICQLISRFNDAAAWFKDTTC 447          
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Match: A0A7S2A9I2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9I2_TRICV)

HSP 1 Score: 107 bits (267), Expect = 4.630e-26
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   43 YPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGILAEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKTR-ACD-ASAIASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSC 414
            YP GPPYL    D  ++   W    P V++++P +LAEMY YCI AAH+ L H++   LMVS   M+ EGW  +D +     C   SA+  ++E +P +LHYCQ Y +G + +GKR +    FFSC
Sbjct:    4 YPAGPPYLATALDMYQIAVKWTEFVPRVHSQYPDLLAEMYAYCIAAAHLKLPHKIVNSLMVSSTEMDNEGWSELDRIPGHDVCHLTSALDYRKEGIPYVLHYCQRYMLGKHFFGKR-RLPKDFFSC 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4291.10971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU90_ECTSI5.520e-8855.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDP3_9STRA5.330e-4339.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1D2M9_CYCTE1.380e-2933.98Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4N1U4_9STRA2.950e-2935.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2GWL2_9STRA5.030e-2930.92Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4JEG4_9STRA1.870e-2835.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CC93_9STRA1.740e-2734.16Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3DXN7_9STRA2.390e-2735.90Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2LB62_9STRA1.280e-2633.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2A9I2_TRICV4.630e-2642.06Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4291contigH-paniculata_contig4291:12313..15835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue4.8e-72
Seed eggNOG ortholog2880.D8LU90
KEGG koko:K20781
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMIY@1,2QQG8@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_004100.1
CAZyGT96
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons3
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4291.10971.1prot_H-paniculata_contig4291.10971.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4291 12313..15835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930305.0074565-CDS-H-paniculata_contig4291:12312..126421622930305.0074565-CDS-H-paniculata_contig4291:12312..12642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 12313..12642 -
1691481233.763943-CDS-H-paniculata_contig4291:12312..126421691481233.763943-CDS-H-paniculata_contig4291:12312..12642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 12313..12642 -
1622930305.0319052-CDS-H-paniculata_contig4291:14352..145091622930305.0319052-CDS-H-paniculata_contig4291:14352..14509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 14353..14509 -
1691481233.7762916-CDS-H-paniculata_contig4291:14352..145091691481233.7762916-CDS-H-paniculata_contig4291:14352..14509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 14353..14509 -
1622930305.053701-CDS-H-paniculata_contig4291:15644..158351622930305.053701-CDS-H-paniculata_contig4291:15644..15835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 15645..15835 -
1691481233.7844381-CDS-H-paniculata_contig4291:15644..158351691481233.7844381-CDS-H-paniculata_contig4291:15644..15835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 15645..15835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4291.10971.1

>prot_H-paniculata_contig4291.10971.1 ID=prot_H-paniculata_contig4291.10971.1|Name=mRNA_H-paniculata_contig4291.10971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
SPLSQIGKQVAVSSYPVGPPYLLHPRDWARVIKLWVAMCPEVYARHPGIL
AEMYGYCIGAAHIGLRHRVAYGLMVSDPTMEKEGWPMVDSLKTRACDASA
IASQREHLPPLLHYCQMYRVGTYMYGKRHKNHHHFFSCGADAFQEPPAHY
LESPMGKVRIHPGREEPVTADRATRQGYMMCSLLRYMNLAQAAFKQRYCS
PDEISGDVWRFTDLKPKVVAADQYG*
back to top

mRNA from alignment at H-paniculata_contig4291:12313..15835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4291.10971.1 ID=mRNA_H-paniculata_contig4291.10971.1|Name=mRNA_H-paniculata_contig4291.10971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3523bp|location=Sequence derived from alignment at H-paniculata_contig4291:12313..15835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCCCTCTCTCAGATAGGCAAACAGGTCGCCGTGTCATCATACCCTGT GGGCCCGCCATATCTTTTGCATCCTCGTGATTGGGCGCGCGTCATCAAGC TGTGGGTAGCCATGTGTCCAGAGGTGTACGCAAGACATCCAGGCATTCTG GCGGAGATGTATGGGTACTGCATCGGGGCCGCACATATTGGGTAGGTGTT GTGCTGTTGTTGCAAAAGGAAGTTAGTTGCGGAGTTGTGTGTGTGTGTGT GTGTGTTGTGGCAGTACCGGCTCGACGACGAGAATTAAAAAAAATTGCGT GCGTCTAAGTTTTGAGACTTGAAGAAATTTCTCTCAAGAAATCGTGCTGA CTCCTCCCGTGTTACAAATTTAGAGACTCACGTTTCGGGTGATGTTAATA GCAGGTGGTCTATGTAAGGTACATAACCTTAGCGGCAGCGAAAAAAAGGT ACATTTATTTACTGCAAGTACATTGGTAGAGGTACACAGTGCCTTATAAC TTATCTGCACTGCTTGTAGGGTTACAAGGTGTCAATACAAAATACATGGG CGGGTAGAGTGCCTCGAGCCGTGTGAGGTACAACGCATGTTTGGCTTGAA CAGGGTGCAGTATTTTGGGCAATAAAAGGTACAGTTCATTCAGTAATATG GTAAACGTATTTGTACCAAGAAGGTATAGCGCCTGTTTTTTGCTCGGCAC TATGGTGCTGTACCTTCCGTAGGACCAACCCCCAAGCTGTAGCGCCAGGT AATGAGCGGAGAGAAACACTGGAGCAAAGCTTGAGAGAGTGTTTGATGTT TGCTGTATGTTTTCCCCTGTGTCAAGGTTGATTGCTGAGAGACATTATTT CATATGTTGGTGCGCTCGGGATCCGTGAGATCGAAAAACGAATAGCGCTG TCCTTGAGGCGTTATACTGCATAAGGCGGCGTTTTTACTTTTAGCGTTTG TGCCTCGTTAGGAAGAGTGTTGTATATTGTAAAGTTGTGCTTTTTTTGTT TGGTTTCTTTCGTCACTAACCCGTATGAAGAGCGGTTATAATCGCCCCGA GGGGCGTTTTTATTTTCATACTTGGTTTTATTGACAGCGAAGTCCGTCTG CACTTTGAAAGAGCACGTCGATTAACAGATCTCAAAGCGATAAATGTTTT CCAACGGCATAACTCTCGGTGTCCGTGGCGCCGTAGCCTGCGAGAAATCA AGTAACAAAAACGTCGCCTCGGGGTGGTTACACCGTCCCCTATACGGGTA CTTGCATGCAAACATCGTTCGCGCGTTTGTTTTTCACGCGCCACCTGGTG ACTCTTGTTATTTGCGCGTGCGACAGGTTGCGACATAGGGTGGCATACGG ATTGATGGTTTCCGACCCCACAATGGAGAAAGAGGGCTGGCCGATGGTGG ACTCGTTGAAGACCCGTGCTTGTGATGCATCTGCGATAGCTAGCCAACGC GAGCATCTGCCACCTTTGTTACACTACTGCCAGGTGAATACACCAGAGGG GAGGGCCCATGGGCTATAGTAGCTTTATAGAGTAAAACGCTACCCCCCCA CGTCCATGAGTACGCCCGTTAATTGGTTCAGTTTGCGGATAATGACCAAG TAATCCGGCAGCTTGAATATGCTGAGCTTACCTCCATTTTGTTTTTACGT TTGTGGTCATGTTTTATACAGTTCAGGCGGTAATTTGTGGACATCTGTCT GTACTTTGAACGTGCTCGTTACTCTCTCTCTCTCTCTCTACTCTATGGAA CATCTTCCAAACCGTATTCTCATAGTGTAGTGAGTACCCTGCGAAATCCT TGATGGCCAGTTGGGGGGTGGTGCGCTCTGAAGTACCTAAAATTTTCGAG TTGATGGTGGATGGGTTCACGGAGGACACACGGGAAAACGAAGCATCGAG TGAGGAAGAACCGAAAACTAGGTGTTGATGTTTGTCCGGGTTATCTTGCA TGGGGGATAAATGGCGCTCGATAGACAGTTGGGATTATATGGGCTGCGTT GTGGAAGACAAGCCTTCGTCTTTTGCGCACGTATTATTTATAGTATTTGT ATATGTATTTTTTTCCGTGTATATTTTTTCATGGTCTTATTTCCATCCGA AGGTTTGTTTCGGCCTGTACTGGTGATGGATTGATGGATGGTGATGGGCC TCCCTTCGAGCATATATTTTCTTGTACTTCTGAAAAAATCTTGAACGATC TCTCTCTCTCTCTCTGTGCCTGTGTCTGTGTCTGTCTGTCCGTCTCTCTC TTCTGGCTTTTCTGATGTTCCTCTTTTCGCCAAAAACAAAATTGTTCTCT TTGTTTATCCCCTCTTTTGCGCACCCTTGTGTTCTCCCACTCAACGGCGT ACGGACTGACGAATTTGAAACGAGTGAAAGCCTTGATACACATACATATA CGTACCTCCTCACCCACCTGCTTGCGCGCCACTCATGGATGTTTTTGTTT CTTGTTTCGGTCAGTACTAAGAATAATTGAAGGATAGGGGGGAGGGTATT CTGTCGCACCTTGAAAATAGGACACGGGGGGGGGGGGGCGCTTCTTTCAT GACTCCATCCTTCTTGGTTACTGTGTATAAGTAGGATCAAATGAGGTTAT AGAGGCACATAACCATCTCCATATATATTTTTTTCTTATAATTCTATACA TTTTTGGGGTTGACCCCAAAATTTGACGGGAACTGTTGAAGTCCATCGGG AGCGCGCGGGACGCAAATATGTATATATTATATCCGCGGAAAATATACCA TAGGTTGCCCCCCCCTTTTCGTATCTTCCTAATTGAGAAAAATTAAAATC GAGGGGGGAAAAACAAATTGTCGAAAAAAAAACACTTTTGAGAGACCACC AGTAACACTGATATACAAGTCGGAATGCACTTCGGAATAACGCGTGTGAG TGAGTCTCGTATCATTTTTCAGCTTCCCAACGATTCCAACCGCAGCCTCT GTACAGTCTTGAAATCCGGAGATAGGATCTGCCAAACACAACCGACTTTA GAATATGATACAGGGGAAGTATAATTAATGACCTCTACCCAGAAACAGGC TCAGAATCGATTTAGAGAACAGATAACGAAGCAATCATCTGTGTCATGTT CCAGGAACGTGGTGGAGAGAAATGCCCATTTTAAACCGCCCCCGCCCGAT GGTTAAACGTGAACGACCCCTGAAACGTTGTGTTCCTTACCAGATGTATC GAGTGGGTACGTATATGTACGGCAAGCGGCACAAGAACCACCATCACTTC TTTTCCTGCGGAGCCGACGCTTTCCAAGAGCCTCCGGCACACTATCTCGA GAGTCCCATGGGAAAGGTTCGCATCCACCCAGGAAGGGAAGAGCCCGTTA CGGCCGACCGGGCAACTCGACAGGGTTACATGATGTGCTCCCTCCTCAGA TACATGAACTTAGCACAAGCCGCGTTCAAGCAACGGTATTGCTCACCCGA CGAAATTTCCGGTGACGTGTGGAGATTTACGGATCTTAAACCTAAAGTTG TGGCAGCCGACCAATACGGTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4291:12313..15835-

>mRNA_H-paniculata_contig4291.10971.1 ID=mRNA_H-paniculata_contig4291.10971.1|Name=mRNA_H-paniculata_contig4291.10971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig4291:12313..15835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCCCTCTCTCAGATAGGCAAACAGGTCGCCGTGTCATCATACCCTGT
GGGCCCGCCATATCTTTTGCATCCTCGTGATTGGGCGCGCGTCATCAAGC
TGTGGGTAGCCATGTGTCCAGAGGTGTACGCAAGACATCCAGGCATTCTG
GCGGAGATGTATGGGTACTGCATCGGGGCCGCACATATTGGTCGCCCCTC
TCTCAGATAGGCAAACAGGTCGCCGTGTCATCATACCCTGTGGGCCCGCC
ATATCTTTTGCATCCTCGTGATTGGGCGCGCGTCATCAAGCTGTGGGTAG
CCATGTGTCCAGAGGTGTACGCAAGACATCCAGGCATTCTGGCGGAGATG
TATGGGTACTGCATCGGGGCCGCACATATTGGGTTGCGACATAGGGTGGC
ATACGGATTGATGGTTTCCGACCCCACAATGGAGAAAGAGGGCTGGCCGA
TGGTGGACTCGTTGAAGACCCGTGCTTGTGATGCATCTGCGATAGCTAGC
CAACGCGAGCATCTGCCACCTTTGTTACACTACTGCCAGGTTGCGACATA
GGGTGGCATACGGATTGATGGTTTCCGACCCCACAATGGAGAAAGAGGGC
TGGCCGATGGTGGACTCGTTGAAGACCCGTGCTTGTGATGCATCTGCGAT
AGCTAGCCAACGCGAGCATCTGCCACCTTTGTTACACTACTGCCAGATGT
ATCGAGTGGGTACGTATATGTACGGCAAGCGGCACAAGAACCACCATCAC
TTCTTTTCCTGCGGAGCCGACGCTTTCCAAGAGCCTCCGGCACACTATCT
CGAGAGTCCCATGGGAAAGGTTCGCATCCACCCAGGAAGGGAAGAGCCCG
TTACGGCCGACCGGGCAACTCGACAGGGTTACATGATGTGCTCCCTCCTC
AGATACATGAACTTAGCACAAGCCGCGTTCAAGCAACGGTATTGCTCACC
CGACGAAATTTCCGGTGACGTGTGGAGATTTACGGATCTTAAACCTAAAG
TTGTGGCAGCCGACCAATACGGTTAAATGTATCGAGTGGGTACGTATATG
TACGGCAAGCGGCACAAGAACCACCATCACTTCTTTTCCTGCGGAGCCGA
CGCTTTCCAAGAGCCTCCGGCACACTATCTCGAGAGTCCCATGGGAAAGG
TTCGCATCCACCCAGGAAGGGAAGAGCCCGTTACGGCCGACCGGGCAACT
CGACAGGGTTACATGATGTGCTCCCTCCTCAGATACATGAACTTAGCACA
AGCCGCGTTCAAGCAACGGTATTGCTCACCCGACGAAATTTCCGGTGACG
TGTGGAGATTTACGGATCTTAAACCTAAAGTTGTGGCAGCCGACCAATAC
GGTTAA
back to top