mRNA_H-paniculata_contig4291.10969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4291.10969.1
Unique NamemRNA_H-paniculata_contig4291.10969.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.550e-46
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            QDK+SLEGSLQLLVAGEMLTGDNCYLCEKC QRVTAQRRCAIKQLP TLIVHLKRFEFDLSTM R KLNHRCSFPMELDM+PWTLE
Sbjct: 2829 QDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 2914          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 5.360e-46
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            QDK+SLEGSLQLLVAGEMLTGDNCYLCEKC QRVTAQRRCAIKQLP TLIVHLKRFEFDL TM R KLNHRCSFPMELDM+PWTLE
Sbjct: 1846 QDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLE 1931          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.790e-29
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPM 228
            Q KD+L  +L L  +GE L GDN YLCE+C +RV AQRRCAIK LP TLIVHLKRFEF+L TM+R KLNHRC+FPM
Sbjct:  137 QTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A7S4ITW2_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 1.330e-25
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    7 KDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            K SLE SL+L V G+ML GDN Y C KC ++VTA +RC I+ LP+TLIVH+KRFEFDL  M R K+N  C FP +L++ P+T E
Sbjct:  213 KSSLEESLELYVEGDMLEGDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRMKVNDHCKFPFDLNVEPYTKE 296          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 5.920e-25
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            + K++LE +L+L V GEMLTG+N Y+CE C + V+  +RC IK LP  L++HLKRFEFD  T+ RKK++  CSFPM L+M P+T E
Sbjct:  135 KQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPMLLNMEPYTAE 220          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 103 bits (258), Expect = 5.340e-24
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            ++K S+  SL L V G+ML GDN + C +C  +V A +RC +K LPD LIVHLKRFEFDL TM R KLN  C FPM LDM P+T E
Sbjct: 1541 KNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPMILDMEPYTKE 1626          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A6A7FV64_9CRUS (Ubiquitin domain containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FV64_9CRUS)

HSP 1 Score: 102 bits (253), Expect = 2.500e-23
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            +DK S+E SLQ  V GEM+ GD+ Y+C  C  +V   RR +IK+LP+TL++ LKRFEFDL TM + K+N  C+FP+ L+M P+T+E
Sbjct:  687 RDKSSIEESLQAYVTGEMMEGDDAYMCSACNAKVDTLRRSSIKELPNTLVLDLKRFEFDLDTMRKLKINDECTFPLVLNMQPYTVE 772          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 100 bits (250), Expect = 6.450e-23
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTL 255
            ++K S+  SL L V GEML GDN Y C  C + VTA++R  +  LP TLIVHLKRFEFD+ T+ R K+N  C FP ELDM P+TL
Sbjct: 1968 KNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYTL 2052          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: UPI000644FF27 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF27)

HSP 1 Score: 100 bits (248), Expect = 1.200e-22
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLEV 261
            ++K  ++ SLQL V  E L GDN Y C +C Q+V    R  +K LP+TLI+H KRFEFDL TM R KLN    FPMELDM+P+T EV
Sbjct: 1465 KNKKDIQESLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKSLPNTLIIHNKRFEFDLDTMRRTKLNDALKFPMELDMAPYTKEV 1551          
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Match: B0EFF4_ENTDS (Ubiquitin specific protease, putative n=1 Tax=Entamoeba dispar (strain ATCC PRA-260 / SAW760) TaxID=370354 RepID=B0EFF4_ENTDS)

HSP 1 Score: 99.4 bits (246), Expect = 2.210e-22
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLIVHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLE 258
            ++K SL  SLQ LV G+ LTG+N Y CEKCQ++V A RR  IK  P+TLI+HLKRFEFD  T+ R K+N R  FP ELD+ P+ +E
Sbjct:  436 KNKTSLAESLQSLVNGDELTGENKYFCEKCQKKVDAIRRTCIKTPPNTLILHLKRFEFDYETLQRIKINDRYEFPRELDLYPYCIE 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4291.10969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU88_ECTSI1.550e-4693.02Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE5.360e-4691.86USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQG3_9STRA1.790e-2969.74USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4ITW2_9EUKA1.330e-2558.33Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A6B2KX30_9EUKA5.920e-2554.65USP domain-containing protein n=2 Tax=Arcella inte... [more]
L8GPA8_ACACA5.340e-2458.14Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
A0A6A7FV64_9CRUS2.500e-2352.33Ubiquitin domain containing protein (Fragment) n=1... [more]
A0A0D2WMI0_CAPO36.450e-2356.47Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
UPI000644FF271.200e-2255.17hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
B0EFF4_ENTDS2.210e-2256.98Ubiquitin specific protease, putative n=1 Tax=Enta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4291contigH-paniculata_contig4291:315..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D8LU88
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930304.9167418-CDS-H-paniculata_contig4291:314..3741622930304.9167418-CDS-H-paniculata_contig4291:314..374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 315..374 +
1691481233.7368915-CDS-H-paniculata_contig4291:314..3741691481233.7368915-CDS-H-paniculata_contig4291:314..374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 315..374 +
1622930304.9403405-CDS-H-paniculata_contig4291:739..9401622930304.9403405-CDS-H-paniculata_contig4291:739..940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 740..940 +
1691481233.751849-CDS-H-paniculata_contig4291:739..9401691481233.751849-CDS-H-paniculata_contig4291:739..940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 740..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4291.10969.1prot_H-paniculata_contig4291.10969.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4291 315..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4291.10969.1

>prot_H-paniculata_contig4291.10969.1 ID=prot_H-paniculata_contig4291.10969.1|Name=mRNA_H-paniculata_contig4291.10969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCQQRVTAQRRCAIKQLPDTLI
VHLKRFEFDLSTMSRKKLNHRCSFPMELDMSPWTLEV
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mRNA from alignment at H-paniculata_contig4291:315..940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4291.10969.1 ID=mRNA_H-paniculata_contig4291.10969.1|Name=mRNA_H-paniculata_contig4291.10969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=626bp|location=Sequence derived from alignment at H-paniculata_contig4291:315..940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAAAGACTCTTTGGAGGGCAGCTTGCAGCTTTTGGTAGCTGGAGA AATGTTGACAGTAAGTCCGGGGAAGGCGGGTCTGTAAGTATAGAGTAAAT AATGTAGTGATGTACTTTTGATTCGTTGATTCGAACCGTTACTGGAGTTT GCCTTTGTGTACAAAAAGTGATATAACACGGCGCGAGCGCGCTAGCTTTG CTCTCCTCTATTTATAGGGTGCACCTCTTTAGTTGCTTGCAAGTTATTGT TGTGTAATTACACTTTTTTTTTTTTTTTGTCTCATATCCCGAATACCTGA TTATTATTTTTTTGCAAAGCATTAAGAAATTGTCGCCTGTTTTCTTTGTC TTTTATTTTATTTTATTTTTTTGTTAAAAAAAAAAATTACAACGTGATCA ATTGCGCGGGGAATCATAATACCAGGGGGACAACTGTTACCTGTGCGAAA AGTGCCAGCAGCGCGTGACCGCCCAGCGGCGTTGCGCCATCAAGCAGCTT CCCGATACCCTCATCGTGCACCTCAAGCGATTCGAGTTTGACTTGAGCAC CATGAGCCGTAAGAAGTTGAACCATCGGTGCTCTTTTCCCATGGAGCTTG ACATGTCGCCATGGACATTGGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4291:315..940+

>mRNA_H-paniculata_contig4291.10969.1 ID=mRNA_H-paniculata_contig4291.10969.1|Name=mRNA_H-paniculata_contig4291.10969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig4291:315..940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAAAGACTCTTTGGAGGGCAGCTTGCAGCTTTTGGTAGCTGGAGA
AATGTTGACACAGGACAAAGACTCTTTGGAGGGCAGCTTGCAGCTTTTGG
TAGCTGGAGAAATGTTGACAGGGGACAACTGTTACCTGTGCGAAAAGTGC
CAGCAGCGCGTGACCGCCCAGCGGCGTTGCGCCATCAAGCAGCTTCCCGA
TACCCTCATCGTGCACCTCAAGCGATTCGAGTTTGACTTGAGCACCATGA
GCCGTAAGAAGTTGAACCATCGGTGCTCTTTTCCCATGGAGCTTGACATG
TCGCCATGGACATTGGAGGTAGGGGACAACTGTTACCTGTGCGAAAAGTG
CCAGCAGCGCGTGACCGCCCAGCGGCGTTGCGCCATCAAGCAGCTTCCCG
ATACCCTCATCGTGCACCTCAAGCGATTCGAGTTTGACTTGAGCACCATG
AGCCGTAAGAAGTTGAACCATCGGTGCTCTTTTCCCATGGAGCTTGACAT
GTCGCCATGGACATTGGAGGTA
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