mRNA_H-paniculata_contig4291.10970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4291.10970.1
Unique NamemRNA_H-paniculata_contig4291.10970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4291.10970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4291contigH-paniculata_contig4291:11203..11813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930304.841426-UTR-H-paniculata_contig4291:11202..114261622930304.841426-UTR-H-paniculata_contig4291:11202..11426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4291 11203..11426 +
1691481233.7101989-UTR-H-paniculata_contig4291:11202..114261691481233.7101989-UTR-H-paniculata_contig4291:11202..11426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4291 11203..11426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930304.8649685-CDS-H-paniculata_contig4291:11426..118131622930304.8649685-CDS-H-paniculata_contig4291:11426..11813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 11427..11813 +
1691481233.7256403-CDS-H-paniculata_contig4291:11426..118131691481233.7256403-CDS-H-paniculata_contig4291:11426..11813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4291 11427..11813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4291.10970.1prot_H-paniculata_contig4291.10970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4291 11427..11813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4291.10970.1

>prot_H-paniculata_contig4291.10970.1 ID=prot_H-paniculata_contig4291.10970.1|Name=mRNA_H-paniculata_contig4291.10970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MASSSTETTMSAYSALHPKTKDQIANPAVSPRQPVSPDNIMFSLVFSSKN
SLVGAPLPYCESSHVAITTARANTSGCLNVVFMYVSCRIAENQGATPNTV
KTLLQQTKTTREKKCPHTHTHTHTHAPAP
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mRNA from alignment at H-paniculata_contig4291:11203..11813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4291.10970.1 ID=mRNA_H-paniculata_contig4291.10970.1|Name=mRNA_H-paniculata_contig4291.10970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=611bp|location=Sequence derived from alignment at H-paniculata_contig4291:11203..11813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATACACTCGAGTAGATTCTTATATTTTCTCATTTACTCTTATTGCCAT
GATATGAGCACGTATTCATACAGCGAAAATCTTCAACAACTGAAAAAATA
CACTTTGAGTGGGAACCATGTTCCTGACGTTCCTGGGCTTCCTGGACGCC
GGCACCCACCACAACAACCATTAGAATCCTTTACCTTTTCTCGGAACAGC
TTTTCTAGTTGTGTCTAATCCCGGATGGCCAGTTCATCAACAGAAACAAC
CATGAGTGCGTACTCCGCACTACATCCCAAAACGAAAGACCAAATAGCAA
ATCCGGCCGTATCCCCTCGACAGCCAGTCTCTCCTGACAACATCATGTTC
TCCCTTGTTTTTTCAAGTAAGAATTCTCTTGTAGGGGCCCCCCTACCGTA
TTGCGAATCTTCTCATGTGGCAATAACAACTGCTCGTGCGAATACCAGTG
GCTGTTTAAACGTCGTCTTTATGTACGTATCATGCAGAATTGCAGAGAAC
CAAGGCGCCACCCCGAACACGGTGAAAACATTGCTCCAACAGACCAAGAC
AACACGAGAAAAAAAATGCCCACACACACACACACACACACACACACACG
CCCCCGCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4291:11203..11813+

>mRNA_H-paniculata_contig4291.10970.1 ID=mRNA_H-paniculata_contig4291.10970.1|Name=mRNA_H-paniculata_contig4291.10970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig4291:11203..11813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAGTTCATCAACAGAAACAACCATGAGTGCGTACTCCGCACTACA
TCCCAAAACGAAAGACCAAATAGCAAATCCGGCCGTATCCCCTCGACAGC
CAGTCTCTCCTGACAACATCATGTTCTCCCTTGTTTTTTCAAGTAAGAAT
TCTCTTGTAGGGGCCCCCCTACCGTATTGCGAATCTTCTCATGTGGCAAT
AACAACTGCTCGTGCGAATACCAGTGGCTGTTTAAACGTCGTCTTTATGT
ACGTATCATGCAGAATTGCAGAGAACCAAGGCGCCACCCCGAACACGGTG
AAAACATTGCTCCAACAGACCAAGACAACACGAGAAAAAAAATGCCCACA
CACACACACACACACACACACACACGCCCCCGCCCCCATGGCCAGTTCAT
CAACAGAAACAACCATGAGTGCGTACTCCGCACTACATCCCAAAACGAAA
GACCAAATAGCAAATCCGGCCGTATCCCCTCGACAGCCAGTCTCTCCTGA
CAACATCATGTTCTCCCTTGTTTTTTCAAGTAAGAATTCTCTTGTAGGGG
CCCCCCTACCGTATTGCGAATCTTCTCATGTGGCAATAACAACTGCTCGT
GCGAATACCAGTGGCTGTTTAAACGTCGTCTTTATGTACGTATCATGCAG
AATTGCAGAGAACCAAGGCGCCACCCCGAACACGGTGAAAACATTGCTCC
AACAGACCAAGACAACACGAGAAAAAAAATGCCCACACACACACACACAC
ACACACACACACGCCCCCGCCCCC
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