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Homology
BLAST of mRNA_H-paniculata_contig429.10967.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 6.690e-16 Identity = 100/231 (43.29%), Postives = 117/231 (50.65%), Query Frame = 3
Query: 1296 LTPREREEWVKAINDSPTDSEVLPAPQPRALWTSNAFSVDDR-------IPSGDSSMPAPQLESLRSS--------------------------SPRRVGSSSHXXXXXXXXXXXXXXXXXX-------------------DSEGPIQIHLLEGHADAIVPPARAEVVSPSQSAFGLRMDEDEGEAGEGEAPLEDEEDDFNSDLEG---DWDTEMGLMEPIVYTDLAQRLN 1823
LTP W + DSPTDSEV PAPQPRAL ++R + PAPQ +LR S S R++ + H XXXXXXXXXXXXXXX DSEGP+Q+ L+G D + PP R EVVSPSQSAFGLR EDEGE GEGEAP E E++ F DWDTEMGL E + Y+DLA RL+
Sbjct: 245 LTPAAGRPWEEY--DSPTDSEV-PAPQPRALGVGGTTDANERRQANTKWLKLSTGERPAPQPATLRPSTTAGRGAQDRASGERSENRVRARTGGSGRKLSRTKHDSSXXXXXXXXXXXXXXXXXKPKGASVLSFVDPQAEDDSEGPVQMSNLDGLGD-LPPPPRQEVVSPSQSAFGLRAYEDEGEDGEGEAPPEAEKEGFXXXXXXXXDDWDTEMGLEE-LEYSDLAIRLD 470
BLAST of mRNA_H-paniculata_contig429.10967.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.930e-12 Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 3
Query: 1563 DSEGPIQIHLLEGHADAIVPPARAEVVSPSQSAFGLRMDEDEGEAGEGEAPLEDEEDDFNSDLEG---DWDT---EMGLMEPIVYTDLAQRLN 1823
DSEGP+Q+ L+G D + PP R EVVSPSQSAFGLR EDEGE GEGEAP E E + F DWDT EMGL E + Y+DL+ RL+
Sbjct: 11 DSEGPVQMSNLDGSGD-LPPPPRQEVVSPSQSAFGLRAYEDEGEDGEGEAPSEAENEGFXXXXXXXXDDWDTVRVEMGLEE-LEYSDLSIRLD 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1868 |
| Cds size | 1785 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig429.10967.1 >prot_H-paniculata_contig429.10967.1 ID=prot_H-paniculata_contig429.10967.1|Name=mRNA_H-paniculata_contig429.10967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=595bp
MKRADEKITASLSQTAASAYSSIMDMRPLRVQRGLGARTVSGKTHSVIGV SANTQGGAEDWTDDFDLGAPHSTKPPSPAPHSPLAAALRRIAKEGESDAP RERRRRPAGSNTTSKKGGTNTASAASSAPSTTQQPATRGVPKSVQLVKDA TGRHTSNTGGGGGGGGGGDLSILAGAAAAAAAAAAYRSGGGSGSAHPNAG ASTISSSSRRHRKEGSSSSHSGHDHHRESTRDSNEHRGGSSNSSRHAARS RGEMRHSSSSVHSRRFTGEPQPQQQRHHRGQQQPQHQQQQQADDSSRSST ARKPRREEPSQHSNHGHSGRTSRTTSSSHSSHHRGSGSSRRGEDGGGGSA GETEQVVVPKRRRSKDEKNRGGRSSSVSSQSTTARKDEAGGSRGGSRSGK RGERLTPREREEWVKAINDSPTDSEVLPAPQPRALWTSNAFSVDDRIPSG DSSMPAPQLESLRSSSPRRVGSSSHRRASTSEQQASTSEQQEEDSEGPIQ IHLLEGHADAIVPPARAEVVSPSQSAFGLRMDEDEGEAGEGEAPLEDEED DFNSDLEGDWDTEMGLMEPIVYTDLAQRLNPPSGGGGPAGGRRGG back to topmRNA from alignment at H-paniculata_contig429:33200..37344+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig429.10967.1 ID=mRNA_H-paniculata_contig429.10967.1|Name=mRNA_H-paniculata_contig429.10967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4145bp|location=Sequence derived from alignment at H-paniculata_contig429:33200..37344+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTGGGAAAGTCATCATTTTTCACACAGTACGAGTGTCGAATGTACCTTGG
TGCCGTCGTGTGTAGCGCGATTTAAGAGCAGCCATGAAAAGAGCGGACGA
GAAAATTACCGCGAGTCTCTCTCAGACAGCAGCATCAGCATATTCCAGCA
TCATGGACATGCGTCCGCTCCGCGTTCAACGCGGTTTAGGAGCTAGGACG
GTCAGTGGCAAAACGCATTCCGTGATCGGAGTCTCTGCGAATACCCAGGG
TGGTGCAGAGGATTGGACGGATGACTTCGACTTGGGTGCTCCTCATTCCA
CCAAGCCTCCATCGCCGGCCCCCCATTCCCCGCTTGCAGCGGCCTTGAGG
CGGATTGCTAAAGAAGGTGAAAGCGATGCGCCACGAGAAAGACGCAGGCG
TCCAGCTGGCTCAAATACTACGTCAAAGAAAGGTGGGACTAACACTGCTT
CTGCTGCTTCATCTGCTCCGTCTACAACCCAGCAGCCAGCAACCCGTGGT
GTTCCAAAGTCTGTTCAGCTAGTGAAGGATGCAACAGGCAGACATACGAG
TAATACAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGTGACTTGAGCATAT
TGGCCGGTGCTGCAGCCGCCGCCGCCGCTGCTGCTGCCTACAGGAGCGGC
GGAGGCAGCGGGTCAGCGCACCCGAACGCGGGGGCGTCCACCATATCTTC
CAGCTCTCGTAGACACCGAAAGGAGGGCAGCAGCAGCAGCCACAGCGGTC
ATGACCATCACAGAGAAAGCACCAGGGATAGCAACGAACACCGGGGGGGC
AGCAGCAACAGCAGCCGGCATGCTGCCCGTAGCCGTGGCGAAATGAGACA
CTCTTCTTCGAGTGTACATAGCAGGCGATTTACAGGAGAACCACAACCAC
AACAACAACGACATCACCGAGGACAACAACAACCACAACACCAACAACAG
CAGCAAGCGGACGACAGCAGCAGGTCCTCTACCGCCAGGAAGCCCAGGCG
CGAGGAACCAAGCCAACACAGTAACCACGGCCACTCAGGTAGAACCTCGC
GCACGACCTCCTCTTCTCACTCATCCCACCACCGCGGTTCCGGTTCTTCG
AGGCGGGGAGAAGATGGCGGTGGTGGGTCGGCGGGCGAAACGGAGCAAGT
AGTGGTACCGAAGCGACGCCGGAGCAAGGACGAAAAGAATCGTGGCGGTA
GAAGCAGTAGCGTTAGCTCACAGAGCACTACAGCACGCAAGGACGAGGCG
GGTGGAAGTCGTGGCGGGAGCAGGTCAGGCAAGCGGGGCGAGAGGCTCAC
GCCTCGGGAACGGGAAGAGTGGGTGAAAGCCATAAATGACAGTCCTACGG
ACTCGGAGGTCCTGCCCGCGCCCCAGCCGCGGGCGCTCTGGACATCCAAT
GCATTTTCTGTCGACGATAGGGTACGTGCCATGGGGTGTTTGTCTTGGGG
ATAAGATAAGCGCAGTCGGTACAGACAGTACAGGGAGAGGGGAGGTCTAT
AGTACGAGCTTTGTTGTTCATTTTCGAGGTTCCCGCGAGCATTACTGTGC
TGTAGAATTTGTCCCAGCCGGTTTGCGCATGGTTTCGGATGTAGAGGCGT
GTTGATACGGTTGTTTGTGACAATGCGGCAAGTACGCATTCCGAACTGTT
GGGCTGGCTCTACAGCACAGTACAGTGTAGCTCTTAATGTTCCGTTTCGC
CGCATTGGTAACGTCATGCGTTACTGTGACTACTTGACTGACTATTCGAA
GTTAACTCGCGGTGTTGTTGACAGCTTTTGTCGTGTATGGTATATAAATA
CATGCACACAGGTATGTTTCCCATCGTATGTGATTGGCCAATTACATGGT
ACCAGGTACTCAAGTATACATGAAATAGTTGCGGACAGACAGTAAAGGAT
GTACGGACAGCACATTTTCTTCAAGTTTTTGAGGTGCCTTTGCAACTTTG
CGCATTGCAGCTTTTCCAAGAGGTCGGCGTGATTTTCGTCGCTTCCTCAC
GGCGCGGAGGAATCCCTGTGTCCCCAAGACAAAGGAGAGATCTGTATGAT
GCATGTAGAGACAATTGCAGATGAAGTTGGTGGTCACCGGTTTTCCCCTT
CGGAATAGTTTTTGTGTTGTCTTTTCAAGTGTTTTCACTCGGTAATTTTT
GCCGCCACTACTCGCGAGGGACTACTAAGGAGTCTTGAGCCAAACGTTCT
TTGGTGGATGCGTACGGTGATGGACAACACACGATTGACTGACTACGGCT
GTAATAAGTGGCCAACTGCTTCGCTTAATGGTGATGAGAAGGCCAAAATC
TCATGTGCAAGTGGAATGACGCAATGATGCTCAATCTCTCACCCTACCGT
ATCTACGTAACAAAGTTGAGGCGTACGAGTTATGTGGGAGTTGGCTGTAT
TTCCTTGTTTGGTATCATGTTGATCGTGGCCTGCTTTCAGCTCTTCTTTC
ACGGACGCCTCCGGGCCCCTCTTCTGCCCCTCCCCCTACCGGGATCATGC
CCTGTTTTGCAGATACCCAGTGGGGACAGCAGCATGCCAGCGCCGCAACT
GGAATCGTTGCGAAGCAGTAGCCCGCGCCGTGTGGGTTCATCCTCTCATC
GGCGAGCAAGCACGAGCGAGCAGCAAGCGAGTACAAGCGAACAGCAAGAG
GTATGTGTCATACTCTCTGTACAGTACATCCGTTAATTGATTGCATTGAC
ATGTGTTCTCCTATTTCAGGGGTAGTATAACCAACCCGTGGATGCTTTTG
ATGGTGGGGTAGGCGCTTGGATTGCATCAAATGCGGTGTGATGCTTGGTT
CTTTATTCGTTGGTGTGCACTTATTGGGGGTCTGATGTTGATATGTGGTG
TTCTGGTTGGTGTTGGTGAAAAGTGATCATGGTTACAATAATGGTCGTAC
TGCACCTGCCCCCTGTGTGTCATACGTTACCCCCCTTCTCTTCTTTTATA
GCATTGTGTATTCACATTGTGGTTGACCAGTGTTTTAGCGTAGTGCTCGT
ACCCGCTATGTTAAGGTTCGATCTTCGTATTCGTCTCTAGCACCGTACAC
TCGCTCTATGATGGATCCACGTAGCCGCCAATACTTCATGCCCCCCACCT
CCTTCCCCTCTCCGCCACCGCCTTACCTAAAAAAACATGACGCCGTCGGA
AAAACACGGGAAATTGCCCAATGCATGCATGAAAACGCTTTTTAGGAGGA
TTCGGAAGGACCCATACAAATTCATCTTTTGGAGGGTCATGCAGACGCAA
TAGTTCCGCCCGCTCGAGCAGAGGTTGTGTCCCCGTCCCAGTCGGCGTTC
GGTCTGCGGATGGACGAAGACGAGGGAGAGGCCGGGGAAGGAGAAGCCCC
CTTGGAGGATGAGGAGGATGATTTTAACTCGGATCTCGAGGGAGACTGGG
ACACGGTGAGGAAGGGAAACGGGGAGGGGGGGGGGAGGGGGTGTACTCAT
GTTCTGCATGTCCTAGTCGTTAGATTAGCCACGCGTCCTCGAGAGAGGAG
ACATGGACGAAACTATTTAGAGAGATAAATAGTGATAAACAGATGGGCAA
AGATGGACATACAGAGAGGATCAAATCCGTATGTGGAATATGTCATTTTC
CAAGCTAATGATTATTTCCTGCAATACTCACCTGTTTGCCGTTGTATGCG
ATTTGTGGAATGTCTTATTGTGGCCTCTGTGGATTTGGTGTTGCAGTGGC
CGCCGAATGGTGCTGGATACTGAGGGAGCATAGCTTGTATTCGGCCGTGG
CTACATACGTACGTCCGTGCAGTAGGTGTCGCTTGTCACATTACTCGTCT
ATGGGTATGATCAAACTGTAAGACCCGCGCTCAATTGCTCGTTACGCTTA
ATGGTTGGTTGATGCACAAGAGTTGTTTCAAAACACTTAGAAATACGGTT
TATCACGCCGACACACATGACAATATTCACGAAAAACGGCCGAAAAAGCA
TGGAAATTGTTCCAAAATATTCGTCACCACGATGCTTGTAAGCAGGCGTT
TCTCATTGGTTTGAATATATGAAAATGTTTGTCATTCGATCTGCAGGAAA
TGGGTCTCATGGAGCCCATAGTGTACACGGATCTAGCGCAGAGGCTGAAC
CCTCCAAGTGGGGGCGGAGGGCCGGCCGGAGGTCGGCGAGGGGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig429:33200..37344+ >mRNA_H-paniculata_contig429.10967.1 ID=mRNA_H-paniculata_contig429.10967.1|Name=mRNA_H-paniculata_contig429.10967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3570bp|location=Sequence derived from alignment at H-paniculata_contig429:33200..37344+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAAAAGAGCGGACGAGAAAATTACCGCGAGTCTCTCTCAGACAGCAGC ATCAGCATATTCCAGCATCATGGACATGCGTCCGCTCCGCGTTCAACGCG GTTTAGGAGCTAGGACGGTCAGTGGCAAAACGCATTCCGTGATCGGAGTC TCTGCGAATACCCAGGGTGGTGCAGAGGATTGGACGGATGACTTCGACTT GGGTGCTCCTCATTCCACCAAGCCTCCATCGCCGGCCCCCCATTCCCCGC TTGCAGCGGCCTTGAGGCGGATTGCTAAAGAAGGTGAAAGCGATGCGCCA CGAGAAAGACGCAGGCGTCCAGCTGGCTCAAATACTACGTCAAAGAAAGG TGGGACTAACACTGCTTCTGCTGCTTCATCTGCTCCGTCTACAACCCAGC AGCCAGCAACCCGTGGTGTTCCAAAGTCTGTTCAGCTAGTGAAGGATGCA ACAGGCAGACATACGAGTAATACAGGAGGAGGAGGAGGAGGGGGAGGAGG AGGTGACTTGAGCATATTGGCCGGTGCTGCAGCCGCCGCCGCCGCTGCTG CTGCCTACAGGAGCGGCGGAGGCAGCGGGTCAGCGCACCCGAACGCGGGG GCGTCCACCATATCTTCCAGCTCTCGTAGACACCGAAAGGAGGGCAGCAG CAGCAGCCACAGCGGTCATGACCATCACAGAGAAAGCACCAGGGATAGCA ACGAACACCGGGGGGGCAGCAGCAACAGCAGCCGGCATGCTGCCCGTAGC CGTGGCGAAATGAGACACTCTTCTTCGAGTGTACATAGCAGGCGATTTAC AGGAGAACCACAACCACAACAACAACGACATCACCGAGGACAACAACAAC CACAACACCAACAACAGCAGCAAGCGGACGACAGCAGCAGGTCCTCTACC GCCAGGAAGCCCAGGCGCGAGGAACCAAGCCAACACAGTAACCACGGCCA CTCAGGTAGAACCTCGCGCACGACCTCCTCTTCTCACTCATCCCACCACC GCGGTTCCGGTTCTTCGAGGCGGGGAGAAGATGGCGGTGGTGGGTCGGCG GGCGAAACGGAGCAAGTAGTGGTACCGAAGCGACGCCGGAGCAAGGACGA AAAGAATCGTGGCGGTAGAAGCAGTAGCGTTAGCTCACAGAGCACTACAG CACGCAAGGACGAGGCGGGTGGAAGTCGTGGCGGGAGCAGGTCAGGCAAG CGGGGCGAGAGGCTCACGCCTCGGGAACGGGAAGAGTGGGTGAAAGCCAT AAATGACAGTCCTACGGACTCGGAGGTCCTGCCCGCGCCCCAGCCGCGGG CGCTCTGGACATCCAATGCATTTTCTGTCGACGATAGGATGAAAAGAGCG GACGAGAAAATTACCGCGAGTCTCTCTCAGACAGCAGCATCAGCATATTC CAGCATCATGGACATGCGTCCGCTCCGCGTTCAACGCGGTTTAGGAGCTA GGACGGTCAGTGGCAAAACGCATTCCGTGATCGGAGTCTCTGCGAATACC CAGGGTGGTGCAGAGGATTGGACGGATGACTTCGACTTGGGTGCTCCTCA TTCCACCAAGCCTCCATCGCCGGCCCCCCATTCCCCGCTTGCAGCGGCCT TGAGGCGGATTGCTAAAGAAGGTGAAAGCGATGCGCCACGAGAAAGACGC AGGCGTCCAGCTGGCTCAAATACTACGTCAAAGAAAGGTGGGACTAACAC TGCTTCTGCTGCTTCATCTGCTCCGTCTACAACCCAGCAGCCAGCAACCC GTGGTGTTCCAAAGTCTGTTCAGCTAGTGAAGGATGCAACAGGCAGACAT ACGAGTAATACAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGTGACTTGAG CATATTGGCCGGTGCTGCAGCCGCCGCCGCCGCTGCTGCTGCCTACAGGA GCGGCGGAGGCAGCGGGTCAGCGCACCCGAACGCGGGGGCGTCCACCATA TCTTCCAGCTCTCGTAGACACCGAAAGGAGGGCAGCAGCAGCAGCCACAG CGGTCATGACCATCACAGAGAAAGCACCAGGGATAGCAACGAACACCGGG GGGGCAGCAGCAACAGCAGCCGGCATGCTGCCCGTAGCCGTGGCGAAATG AGACACTCTTCTTCGAGTGTACATAGCAGGCGATTTACAGGAGAACCACA ACCACAACAACAACGACATCACCGAGGACAACAACAACCACAACACCAAC AACAGCAGCAAGCGGACGACAGCAGCAGGTCCTCTACCGCCAGGAAGCCC AGGCGCGAGGAACCAAGCCAACACAGTAACCACGGCCACTCAGGTAGAAC CTCGCGCACGACCTCCTCTTCTCACTCATCCCACCACCGCGGTTCCGGTT CTTCGAGGCGGGGAGAAGATGGCGGTGGTGGGTCGGCGGGCGAAACGGAG CAAGTAGTGGTACCGAAGCGACGCCGGAGCAAGGACGAAAAGAATCGTGG CGGTAGAAGCAGTAGCGTTAGCTCACAGAGCACTACAGCACGCAAGGACG AGGCGGGTGGAAGTCGTGGCGGGAGCAGGTCAGGCAAGCGGGGCGAGAGG CTCACGCCTCGGGAACGGGAAGAGTGGGTGAAAGCCATAAATGACAGTCC TACGGACTCGGAGGTCCTGCCCGCGCCCCAGCCGCGGGCGCTCTGGACAT CCAATGCATTTTCTGTCGACGATAGGATACCCAGTGGGGACAGCAGCATG CCAGCGCCGCAACTGGAATCGTTGCGAAGCAGTAGCCCGCGCCGTGTGGG TTCATCCTCTCATCGGCGAGCAAGCACGAGCGAGCAGCAAGCGAGTACAA GCGAACAGCAAGAGATACCCAGTGGGGACAGCAGCATGCCAGCGCCGCAA CTGGAATCGTTGCGAAGCAGTAGCCCGCGCCGTGTGGGTTCATCCTCTCA TCGGCGAGCAAGCACGAGCGAGCAGCAAGCGAGTACAAGCGAACAGCAAG AGGAGGATTCGGAAGGACCCATACAAATTCATCTTTTGGAGGGTCATGCA GACGCAATAGTTCCGCCCGCTCGAGCAGAGGTTGTGTCCCCGTCCCAGTC GGCGTTCGGTCTGCGGATGGACGAAGACGAGGGAGAGGCCGGGGAAGGAG AAGCCCCCTTGGAGGATGAGGAGGATGATTTTAACTCGGATCTCGAGGGA GACTGGGACACGGAGGATTCGGAAGGACCCATACAAATTCATCTTTTGGA GGGTCATGCAGACGCAATAGTTCCGCCCGCTCGAGCAGAGGTTGTGTCCC CGTCCCAGTCGGCGTTCGGTCTGCGGATGGACGAAGACGAGGGAGAGGCC GGGGAAGGAGAAGCCCCCTTGGAGGATGAGGAGGATGATTTTAACTCGGA TCTCGAGGGAGACTGGGACACGGAAATGGGTCTCATGGAGCCCATAGTGT ACACGGATCTAGCGCAGAGGCTGAACCCTCCAAGTGGGGGCGGAGGGCCG GCCGGAGGTCGGCGAGGGGGAGAAATGGGTCTCATGGAGCCCATAGTGTA CACGGATCTAGCGCAGAGGCTGAACCCTCCAAGTGGGGGCGGAGGGCCGG CCGGAGGTCGGCGAGGGGGA back to top
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