mRNA_H-paniculata_contig429.10966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig429.10966.1 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI) HSP 1 Score: 298 bits (762), Expect = 1.070e-79 Identity = 178/326 (54.60%), Postives = 202/326 (61.96%), Query Frame = 1
Query: 1774 DENPVLRVLELHESPCFHGAGIALAVEG--DSSLLTKHGPLPGRSYVILVRPCRRRXXXXXXXXXXXXXXXXXXXXXGEPGVNGKGSERGSXXXXXXXXXXXXGVATFDAGYYWHGLEESAAVEGVGILLCQQVERMFPPPSAFDYGRSRRKGQXXXXXXXXXXGGFG-MMRGFVADVKLGLPVPDGFWSCIFPGRSSISIGGKPRYGPKDIA-LLSEELRPAPRTRPVRLFGVCAESQKAGLRYVWEVTAGGMPSQLTLSPSLSHVVDTGTSLVYVWHGAGCHGDGRRLGCRVARAYAKRVEGGATVTQVDAGEEPLLLLNCFIG 2739
D RVLEL E+PC G+GI +AVEG +SLL KHGPLP RSY+ LVRP RR + GV+ G ER V TFD GYYWHG+ E+AAVEGVGILLCQQV+RMFP P XXXXX G FG MMRGFVADVK+GLPVP+GFW C+ P S P D +L ++LRP R+R VR+FGVCA S+KA +VWEVT GGMPSQ+TLSPSLSHVVD G S VYVWHG G + DGR L RVAR YA RVEGGA+V QVDAG EP+ LLNCFIG
Sbjct: 58 DAGRQARVLELQENPCLQGSGIVIAVEGPCSASLLAKHGPLPDRSYICLVRPRSRRVGSANE----------------KGGVHFCGGER---------------VGTFDEGYYWHGVGETAAVEGVGILLCQQVDRMFPSPXXXXXXXXXXXXXXXXXXGIGGAGLFGGMMRGFVADVKVGLPVPNGFWECVLPEGS-----------PSDSRRMLWQDLRPDRRSRAVRVFGVCAGSRKARQSFVWEVTTGGMPSQMTLSPSLSHVVDAGGSCVYVWHGNGSNRDGRSLAVRVARVYAARVEGGASVEQVDAGSEPVGLLNCFIG 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig429.10966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig429.10966.1 >prot_H-paniculata_contig429.10966.1 ID=prot_H-paniculata_contig429.10966.1|Name=mRNA_H-paniculata_contig429.10966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1282bp MAVRSCSRSPLRRQGVFHGDSSLDETTEVTDTKAAAGEAEMATLPAKGLIback to top mRNA from alignment at H-paniculata_contig429:15661..32928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig429.10966.1 ID=mRNA_H-paniculata_contig429.10966.1|Name=mRNA_H-paniculata_contig429.10966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17268bp|location=Sequence derived from alignment at H-paniculata_contig429:15661..32928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig429:15661..32928- >mRNA_H-paniculata_contig429.10966.1 ID=mRNA_H-paniculata_contig429.10966.1|Name=mRNA_H-paniculata_contig429.10966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7692bp|location=Sequence derived from alignment at H-paniculata_contig429:15661..32928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |