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Homology
BLAST of mRNA_H-paniculata_contig4289.10962.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.540e-53 Identity = 123/340 (36.18%), Postives = 176/340 (51.76%), Query Frame = 1
Query: 13 RRVAVQERGEPKSGTGFMFEWAGGMLVHACEYLKHIFGDSSCII---GNTLSTDDKN--------DLKYMSLSFTPNTTEA-------STDRCPCDELNSVYIEINSGGKHRLPFGKSNCTLSHGGGVARPGSSACLFFDGTRPANFTDLWHCIQEAVPKCSVQDNRRQMVIMRNPLAVAVSHYYYLLTPSQP----PSDVAGKPRLLEEYVSRMLPTVCQWVALRYILFAGILSDQSTIFWYDEAKANPLAWHNNWLDFIGLHLPPYVV------EVRVNHGDTFHTKGVDQHLG----MPSRSYKDEFSAEVLTRFESTLQLWLPPVLLARFGVPSLP 936
+ V +Q RGEPKSGT FMFEWA L+ CE L ++G+ +C G K D+K + F PN S CPC ++ V I ++S KH LP S C H V P + C +G R N+TD C+Q+ C + D+R QM+I+R+P AVAVS +++L T P +D + ++ +V RMLPT+C ++ LRY++ L ++ F YDE+ A+PL WH WL +GL PP VV +R +G F KGVD+H G R+++DE S +V + E + WLPPVLL +FG+ + P
Sbjct: 98 QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPS-CPWQHVDNVT-PENKGCTTVNGRRVGNYTDTVECLQQH--PCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDES-----VDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYG--FAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAPP 426
BLAST of mRNA_H-paniculata_contig4289.10962.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 145 bits (367), Expect = 7.850e-39 Identity = 84/230 (36.52%), Postives = 123/230 (53.48%), Query Frame = 1
Query: 250 LNSVYIEINSGGKHRLPFGKSNCTLSHGGGVARPGSSACLFFDGTRPANFTDLWHCIQEAVPKCSVQDNRRQMVIMRNPLAVAVSHYYYLLTPSQPPSDVAGKPRLLEEYVSRMLPTVCQWVALRYILFAGILSDQSTIFWYDEAKANPLAWHNNWLDFIGLHLPPYVVEVRVNHGDTFHTKGVDQHLG----MPSRSYKDEFSAEVLTRFESTLQLWLPPVLLARFGVP 927
L V I I++ KHRLP +S C SHG G G C FDG DLW C+Q+ C + DNR Q V +R+P AVAVS Y++ + + L++ V +LP +C + LR+ILF G+LS+++ +FWY++ +P WH W F GL LP ++ V K ++ H G +R+++DE S + +S L+ WLP VLLAR+G+P
Sbjct: 2 LRRVEISISTVDKHRLPVNES-CPWSHGSGTVHEGDG-CWSFDGHPVETGADLWACMQKT--PCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHPS---LDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQAH--KHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIP 222
BLAST of mRNA_H-paniculata_contig4289.10962.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.150e-22 Identity = 54/133 (40.60%), Postives = 78/133 (58.65%), Query Frame = 1
Query: 568 LEEYVSRMLPTVCQWVALRYILFAGILSDQSTIFWYDEAKANPLAWHNNWLDFIGLHLPPYVV------EVRVNHGDTFHTKGVDQHLG----MPSRSYKDEFSAEVLTRFESTLQLWLPPVLLARFGVPSLP 936
++ +V RMLPT+C ++ LRY++ L ++ F YDE+ A+PL WH WL +GL PP VV +R +G F KGVD+H G R+++DE S EV + E + WLPPVLL +FG+ + P
Sbjct: 29 VDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYG--FVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAPP 159
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 942 |
| Cds size | 942 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4289.10962.1 >prot_H-paniculata_contig4289.10962.1 ID=prot_H-paniculata_contig4289.10962.1|Name=mRNA_H-paniculata_contig4289.10962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
GKYVRRVAVQERGEPKSGTGFMFEWAGGMLVHACEYLKHIFGDSSCIIGN TLSTDDKNDLKYMSLSFTPNTTEASTDRCPCDELNSVYIEINSGGKHRLP FGKSNCTLSHGGGVARPGSSACLFFDGTRPANFTDLWHCIQEAVPKCSVQ DNRRQMVIMRNPLAVAVSHYYYLLTPSQPPSDVAGKPRLLEEYVSRMLPT VCQWVALRYILFAGILSDQSTIFWYDEAKANPLAWHNNWLDFIGLHLPPY VVEVRVNHGDTFHTKGVDQHLGMPSRSYKDEFSAEVLTRFESTLQLWLPP VLLARFGVPSLPG* back to topmRNA from alignment at H-paniculata_contig4289:9230..14086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4289.10962.1 ID=mRNA_H-paniculata_contig4289.10962.1|Name=mRNA_H-paniculata_contig4289.10962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4857bp|location=Sequence derived from alignment at H-paniculata_contig4289:9230..14086- (Halopteris paniculata Hal_grac_a_UBK monoicous) GGAAAGTACGTCAGGCGTGTTGCGGTGCAGGAGAGGGGAGAGCCAAAGAG
CGGGACGGGATTCATGTTTGAGTGGGCGGGCGGAATGCTTGTCCATGCTT
GCGAGTATTTGAAGCACATCTTCGGCGACTCGAGTTGCATAATTGGGAAT
ACGCTCAGCACGGACGACAAGAACGACCTCAAGTACATGAGCCTCTCTTT
CACCCCGAACACGACAGAAGCAAGTACCGATCGTTGTCCGTGTGACGAGC
TTAACAGGTGACTATGGACAGTCAGTCATAAATGCCTGGTAGTCGGTTCT
TTTTCAACTCTTCTAGTTGGAGGCATCCGTACTATACGCGAACACATATT
GCAGTAGGTTCAAACGAATTGACGGGGTTCTCATGAATGAAGAGCTTCGG
CAAAATTCATAGACGACCCAGTTATACGCTTCGAATATCAGGGATTTCGA
TCCAACATAAACTCAACGCGGGGTCATTGAGGGTTGGGCGAGGAATTGCC
ACGATGTATTTCTGCTTCACGTTTGTGTCGATATAGAATGTGGTTTGATT
TTGAGAACTGCCGAGTTTTGGTACACTCGGAATGGTGGCGCTGTTTTGTG
CAAGCTACGGTACTCAAGGTTAGTTATGCAACCCAAGAACATCTGCCTCT
CATTCGTAATTTTTGGTATTTATAACCTGATTCGTTCAATGATGTGGACT
GTAAAGCTTTCCGCCTTCAGGACTCTTTCCATAAATGAATCAAGCAGTTA
ATGTAGGAGTCCTTCCGTACAAACGTATCATTCACCCGCCGATGGATACT
CATTTCCTCGATGAGGTAATGGATGTCAATTCCTTCTATATGATATAGAG
CCCTATGGGCATACCAGGTACGACGAAGTTTACACCAAGACAGCCTCGTG
TGAGAATTTGAAGTGGATATGAGCTGCACGCAGGGTACCAAATGTGGAGT
GACCATATCTCAACCCGTATTTGAGATTGAAACAATTCCATGTTGGATGC
AACCACGCCACTCCAAGTACAAATAAAAATACGAAAAAACGAATATTCCG
TTGATTTGGTCGAAATATTTGGATAGCCACTCCTGAGAGTGACTCCCATC
GCTGAAAGGAGTGACCCCAAATGTGACCCCCCTATGGTGGAATCATTGCG
TAGAGAGATAAAATTCGCCAAGAGCCATTTCAAATGAAGGGACGGGCAAC
ACGATAACAACATCTATTTTTCGAGCTAGACGCCTAAATATATCGAATGC
GGACCTCACTTTTGGCCCTTCACATGCACCATTCCCAAGGCATCGAGGAA
GGAACTTGCATGTGACCAAGATTTAAAATAGAAGCTGCTACGTCCAAAAA
CAACGGCCGAAAAACAGTTGTTTCAAAATGATTCCATACTAGAACCAAGA
TAACTTGATATCGAATATGGATATTTGCCCGCTTCTGTTGAAACGGCTCC
AATAACTGGCCGTCGAATAAATACGACCCGGAAAGCGACGTAAGTCTCGG
CAAACAGAGTTGACCTCCTCGGAGCGAACGCTGACTGGGTTGGTAGCTCA
GTGATTAGGTTATTTCTGCACAGAGGCTTACCCTTGGTCGGGTGCCATTT
CTCTCTTGAACGTGGGCCTCTTATTCTTTTGTTTGCTCCCGCCTGCTGGC
TATGGTTGAACACGATGGCTGTGATAACTATGAAGCATCCACCCCGAGGA
CGGTAGGGGACGGGTTCGAAGGAATTGAAGCCAATCTTGACAGGTATTGG
CCGTCCCATCGACCTTGAGAGAGTTGAAATTATGCATGTTCTCGTCGGAT
GGCGTCCACCCGCCAGCCTTGAAAGGGGAGCTAATATCTTTTTTGCGGTA
ATTATTAAAATCTTCATCGAATATTTATTCTTGATATTGGCCCTCCCGTT
CGCTTGAAACGGTTCATTAGAATATTATTCCAGGTATCCCCGTTGGTCTG
ATATTGCACGCACGAAACGGGTGTAAACGACACACACAAAATTATTTCTT
ACGAAAAAGAGATAGACGTTCGAGCGTGTTGGTTTGTCGCGTGGGCAATC
CATAACATACATCCGCCATTCTCCCAGCCATAGTCGCTGTATAGAGTATT
CTAATAAGCCCCTCCTGGTCTTCAGAACTGACCGAGACTCGCCCCCAATC
TCTCCCCTACCCCCGCCCCCCCCTGACGTTTATCTTTGTTGCAGATGAAA
AAGCGTTTGGGTAGGTTATAGAATCCCTCGAAAACATTTCTGATAACCAG
TCACAGGACAACCTGTTGTGAAGAGGTTCCTATACTCTCTGAGATAAAAC
TCACACGTACGTGATTGGTTATAGTTATCCTCTAAGACTCACGTTTATTA
GCTCTCTCAATTATCTTTGAAGCCAAATCCAGACATTTGCGTAGCAGCGA
TCACCGAGGGGGGGTGATCATGTTCACGCAGTAACTTACATCTACATAGA
AATAGTTCCTGCATGAAACACGGCATTCTCTTCTCAAACCCGGTATCATC
CGAACCGATACAAAACCAAGTGAAACCGTTAGATATACATGTTGATTCTG
GTTGAGCCGGCACAAGATTCTAACGACCTCGCTGAGAGGTATCTTGACTT
CCAACTCTAGCTGCTACCGTCTCTGCCCCTTATGACACTGTCCATAAAAC
ATAGTAACACCTGCGTAGGCCGCATCGGCGTGAACCCCCAAGTTTTGGTC
AGCGACACGCCGATCGCAACACCCGCCTCCATCACAGCTGATGCGACTCG
ATGATTCTACTATTGATAGCTTAGGTAACATTCGAGGATGTATGCTGCGC
TCACCTTTCCTTCGTTACTAGATTTCTTCCCCACCCTGTTGTAACTGCTC
CCTAAACGTTCGCATTTTTGTCAACCCCGGTGGTAACTTTGGTGGAAGCA
GCGTATACATCGAGATCAACAGTGGAGGTAAGCACAGGCTACCCTTTGGG
AAAAGTAACTGCACTTTGTCGCACGGCGGCGGTGTTGCCCGCCCCGGGTC
GTCGGCTTGCTTGTTTTTTGACGGGACGAGACCGGCAAACTTCACCGATT
TATGGCACTGTATCCAAGAAGCGGTGCCGAAATGCAGCGTGCAGGACAAC
CGCCGGCAGATGGTTATTATGCGGAATCCCTTGGCGGTAGCCGTAAGTCA
CTACTATTACTTGTTGACGCCCAGTCAACCCCCCAGTGATGTCGCCGGCA
AACCTCGATTGGTTGAGGCTGAGTCCAACATCAACAATTCTACCATGGTG
AGACGAGAGCAGCAACAGGCCAACGCCAAAAAGCTGGAGGAGTACGTTTC
GAGGATGCTACCAACCGTGTGCCAGTGGGTAGCTCTGCGTTACATCTTGT
TCGCAGGCATCTTGTCTGACCAGTCGACAATTTTCTGGTACGACGAAGCG
AAGGCTAATCCATTGGCATGGCACAATAATTGGCTTGACTTCATCGGTCT
ACATCTTCCACCCTATGTTGTGGAGGTGAGGGTGAACCATGGTGATACGT
AGTCAAGCACAAGGAAATTTACGTGTTTGGGAATCACATCTATACGTAGG
TTCGTTCGGCTTTAATATTCCGCTTTGACCAACAAAATAGGCAGGTTAAT
CCGTTTTTTACTCCCACTTGATAGTGACTAGAGTGATCCGTAATTCGTAA
TACGGCGCGTTGAATCGTACATCATCACTCTGGTCGGTGCCTCGTTGAGT
TTTCAGGTCGTGCGTAGCTAGATTTTGGGGCGCCATTACTTCCATCGACA
CAAGCACTAAATAGAAACCACCTTCGCATGATCTTGCCCCTCCACAAGTT
TTTGACTCCATTTTCCACTTTACTGCATGATACAACGCACACATAGCACA
CATATTAACCACTTAACTACCATTTGGATGCATACTAGATTGTAGTAGAC
ACTGTTCATCGGGTGACAGACACGTGGCCTCTCCCTTCTCATATTATTAC
CGTTTTGTATACCTCGGTATGTACTTGAACTCCGCCCAGCCCCGCCAACA
CTCTGGAGGTTGTTTTTTCCGGATTGGAAAAACTCCGGGGCTCCGTCGAC
TGGATTTTAGTCAGGGGCTATTTTGCTCTAGATTCGCTTCACTATATCTC
AGGTTAGGATCCGGAGGTCCGTCCAATGTTTTCATCCGATGGGTCACCCA
AATTACTTAGTCTTCAATCCGAAAAGCCTCTCCGTACATGTTTTGGGGGA
ACGAAGGCATCTGTTATTTGAACGGAAAATACAGGTCCCAATCCAGCGCC
GCCATCTCCCCTTGAGGTAGTGAAGCGGTGATAATGGGGATATGCTTGCG
GCACGCTCCCTCACATAGGATTAGCTCCTGTCTTTCCAAGAAGGAAAGGC
TCTGAGCCATGCCCCTCCTCCATAGTATACATGCAAGGCAACGACACAAG
GTGTTGGTCTCTATCAGTTCTGACACCCTACAGACAAGGGGGCGGGGGTT
CAGTAATCCTGATGATGTGCCCAGAAATCGCCCTTGGTACCGCAATCATG
TGAGCAGTAGATACCGAACGAAGACTAAGATGCCGCGGATGATTCAGCGG
GAAAACGCTACACACACTCGTCGATTTCAGGCTAAGTGAATATGTCCATC
GTGATAAAGCATATCCCCGCGCTCCCGCTATGCACCACAATTTGATGTTC
TGATCAACGCAGGCTGCCACATATGCCGCCTTACGGCATGACTTCAGCTT
CCACACCAAAGGAGTTGATCAGCACTTGGGTATGCCTTCCCGCTCTTACA
AGGACGAGTTTAGCGCCGAGGTCCTTACGAGGTTCGAATCGACATTACAG
CTCTGGCTGCCGCCGGTCCTTCTCGCTAGGTTCGGTGTGCCATCGCTGCC
AGGGTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4289:9230..14086- >mRNA_H-paniculata_contig4289.10962.1 ID=mRNA_H-paniculata_contig4289.10962.1|Name=mRNA_H-paniculata_contig4289.10962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig4289:9230..14086- (Halopteris paniculata Hal_grac_a_UBK monoicous) GGAAAGTACGTCAGGCGTGTTGCGGTGCAGGAGAGGGGAGAGCCAAAGAG CGGGACGGGATTCATGTTTGAGTGGGCGGGCGGAATGCTTGTCCATGCTT GCGAGTATTTGAAGCACATCTTCGGCGACTCGAGTTGCATAATTGGGAAT ACGCTCAGCACGGACGACAAGAACGACCTCAAGTACATGAGCCTCTCTTT CACCCCGAACACGACAGAAGCAAGTACCGATCGTTGTCCGTGTGACGAGC TTAACAGGGAAAGTACGTCAGGCGTGTTGCGGTGCAGGAGAGGGGAGAGC CAAAGAGCGGGACGGGATTCATGTTTGAGTGGGCGGGCGGAATGCTTGTC CATGCTTGCGAGTATTTGAAGCACATCTTCGGCGACTCGAGTTGCATAAT TGGGAATACGCTCAGCACGGACGACAAGAACGACCTCAAGTACATGAGCC TCTCTTTCACCCCGAACACGACAGAAGCAAGTACCGATCGTTGTCCGTGT GACGAGCTTAACAGCGTATACATCGAGATCAACAGTGGAGGTAAGCACAG GCTACCCTTTGGGAAAAGTAACTGCACTTTGTCGCACGGCGGCGGTGTTG CCCGCCCCGGGTCGTCGGCTTGCTTGTTTTTTGACGGGACGAGACCGGCA AACTTCACCGATTTATGGCACTGTATCCAAGAAGCGGTGCCGAAATGCAG CGTGCAGGACAACCGCCGGCAGATGGTTATTATGCGGAATCCCTTGGCGG TAGCCGTAAGTCACTACTATTACTTGTTGACGCCCAGTCAACCCCCCAGT GATGTCGCCGGCAAACCTCGATTGCGTATACATCGAGATCAACAGTGGAG GTAAGCACAGGCTACCCTTTGGGAAAAGTAACTGCACTTTGTCGCACGGC GGCGGTGTTGCCCGCCCCGGGTCGTCGGCTTGCTTGTTTTTTGACGGGAC GAGACCGGCAAACTTCACCGATTTATGGCACTGTATCCAAGAAGCGGTGC CGAAATGCAGCGTGCAGGACAACCGCCGGCAGATGGTTATTATGCGGAAT CCCTTGGCGGTAGCCGTAAGTCACTACTATTACTTGTTGACGCCCAGTCA ACCCCCCAGTGATGTCGCCGGCAAACCTCGATTGCTGGAGGAGTACGTTT CGAGGATGCTACCAACCGTGTGCCAGTGGGTAGCTCTGCGTTACATCTTG TTCGCAGGCATCTTGTCTGACCAGTCGACAATTTTCTGGTACGACGAAGC GAAGGCTAATCCATTGGCATGGCACAATAATTGGCTTGACTTCATCGGTC TACATCTTCCACCCTATGTTGTGGAGGTGAGGGTGAACCATGGTGATACC TGGAGGAGTACGTTTCGAGGATGCTACCAACCGTGTGCCAGTGGGTAGCT CTGCGTTACATCTTGTTCGCAGGCATCTTGTCTGACCAGTCGACAATTTT CTGGTACGACGAAGCGAAGGCTAATCCATTGGCATGGCACAATAATTGGC TTGACTTCATCGGTCTACATCTTCCACCCTATGTTGTGGAGGTGAGGGTG AACCATGGTGATACCTTCCACACCAAAGGAGTTGATCAGCACTTGGGTAT GCCTTCCCGCTCTTACAAGGACGAGTTTAGCGCCGAGGTCCTTACGAGGT TCGAATCGACATTACAGCTCTGGCTGCCGCCGGTCCTTCTCGCTAGGTTC GGTGTGCCATCGCTGCCAGGGTAACTTCCACACCAAAGGAGTTGATCAGC ACTTGGGTATGCCTTCCCGCTCTTACAAGGACGAGTTTAGCGCCGAGGTC CTTACGAGGTTCGAATCGACATTACAGCTCTGGCTGCCGCCGGTCCTTCT CGCTAGGTTCGGTGTGCCATCGCTGCCAGGGTAA back to top
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