mRNA_H-paniculata_contig4287.10960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4287.10960.1
Unique NamemRNA_H-paniculata_contig4287.10960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4287.10960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4287contigH-paniculata_contig4287:14726..15914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size416
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4287.10960.1prot_H-paniculata_contig4287.10960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4287 14726..15914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930303.4542358-CDS-H-paniculata_contig4287:14725..147851622930303.4542358-CDS-H-paniculata_contig4287:14725..14785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 14726..14785 +
1691481233.1018424-CDS-H-paniculata_contig4287:14725..147851691481233.1018424-CDS-H-paniculata_contig4287:14725..14785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 14726..14785 +
1622930303.4696684-CDS-H-paniculata_contig4287:14915..149981622930303.4696684-CDS-H-paniculata_contig4287:14915..14998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 14916..14998 +
1691481233.11495-CDS-H-paniculata_contig4287:14915..149981691481233.11495-CDS-H-paniculata_contig4287:14915..14998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 14916..14998 +
1622930303.485198-CDS-H-paniculata_contig4287:15643..159141622930303.485198-CDS-H-paniculata_contig4287:15643..15914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 15644..15914 +
1691481233.1283476-CDS-H-paniculata_contig4287:15643..159141691481233.1283476-CDS-H-paniculata_contig4287:15643..15914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4287 15644..15914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4287.10960.1

>prot_H-paniculata_contig4287.10960.1 ID=prot_H-paniculata_contig4287.10960.1|Name=mRNA_H-paniculata_contig4287.10960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
QRGQQQFLHAGQQQPVLGRQASGSLDPQQSFPNAHGSETSIRGRRGGSGK
AGGANGAKRQPSVPNLLGSPAGGGGSAGGASEAGAGVGGAGAGNGTGTGN
GTGTPSGTPSGIGIGTAAPTPTLTSISRSTPTPALTSI
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mRNA from alignment at H-paniculata_contig4287:14726..15914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4287.10960.1 ID=mRNA_H-paniculata_contig4287.10960.1|Name=mRNA_H-paniculata_contig4287.10960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1189bp|location=Sequence derived from alignment at H-paniculata_contig4287:14726..15914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGGGGCCAACAGCAGTTTTTACACGCTGGGCAGCAGCAGCCTGTGCT
CGGTCGCCAGGTAGGCACTCACAAAAAACAGCCTTGAACACGAGACGTTT
GGGTATTGGTGATGGTGGTGTTGCTGTGTGATTGTTGTGTGATTGCTGTC
ATTGATGAATCTTTTTGTTCCATTTTGTTTTTTAATCTAGGCATCCGGCT
CGCTGGACCCGCAGCAATCATTCCCCAACGCTCACGGAAGCGAAACGAGC
ATCAGAGGACGGCGTGGTGGAAGGTGTGTGTGTGTGTGTGTGTGTGTGCA
TGTGTGTGTAAAGATTCAATACTCGTTCATCAGACGATCATTGTATAGTG
TTCGTTTTACATATTTTGAATATTTTTATATCTGTAAAAGTGCCTTGCTT
TTGTTGGCTTTCATCTTGACGATATTGTGAAATGTGCTCGCAAAGGTCAA
TGTTTTTTTTTCAGGCTTTGAAAAGGCTATACTAGTAGACTATTTTGTGT
ACCAGCAGTCAGCCGGACAGTTAGACTTCTGGTCACTAACGTTTGTTTTT
TTTGTGGCGGTACTGTTGAGGTTCGTTTCCAGCCTAATTATTTGAAGATA
ATCTGTTAAATGTATCCGCCCCCCCAGTGCCCCTACTCTGGGCCACACAA
ATACACACACGCGCGTGCTCCATAAACGAAACAGAACAAAAAACCTTCCG
TCATACGATTTTTTCCCTTGACGATTACGTTAGGTTGCTTCTATTACTTG
ATAGGTAGACCACGACTACCCCACCCAACGGAGCGTGTTTCTGAGAAAAA
CATCATGATGACCCCCGTGATTACCATATTTAACCGTCATTCATAAACAT
CATTTTTTTCTTTTTTTTCCGGTCGGCGGGGGGCGGGGGGCGCGGGGGGG
GGCTTCTATGTTTTTCAGTGGCAAGGCTGGCGGGGCAAACGGCGCGAAAC
GTCAGCCGAGCGTCCCGAATCTTTTGGGATCACCCGCTGGGGGAGGGGGC
AGCGCCGGCGGCGCTAGTGAAGCAGGTGCTGGCGTGGGCGGAGCTGGGGC
CGGAAACGGAACTGGAACCGGAAACGGAACTGGAACCCCAAGTGGAACCC
CAAGTGGAATCGGAATCGGAACCGCAGCTCCAACTCCAACCCTAACTTCA
ATTTCAAGGTCAACTCCAACTCCAGCCCTAACTTCAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig4287:14726..15914+

>mRNA_H-paniculata_contig4287.10960.1 ID=mRNA_H-paniculata_contig4287.10960.1|Name=mRNA_H-paniculata_contig4287.10960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig4287:14726..15914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGGGGCCAACAGCAGTTTTTACACGCTGGGCAGCAGCAGCCTGTGCT
CGGTCGCCAGCAACGGGGCCAACAGCAGTTTTTACACGCTGGGCAGCAGC
AGCCTGTGCTCGGTCGCCAGGCATCCGGCTCGCTGGACCCGCAGCAATCA
TTCCCCAACGCTCACGGAAGCGAAACGAGCATCAGAGGACGGCGTGGTGG
AAGGCATCCGGCTCGCTGGACCCGCAGCAATCATTCCCCAACGCTCACGG
AAGCGAAACGAGCATCAGAGGACGGCGTGGTGGAAGTGGCAAGGCTGGCG
GGGCAAACGGCGCGAAACGTCAGCCGAGCGTCCCGAATCTTTTGGGATCA
CCCGCTGGGGGAGGGGGCAGCGCCGGCGGCGCTAGTGAAGCAGGTGCTGG
CGTGGGCGGAGCTGGGGCCGGAAACGGAACTGGAACCGGAAACGGAACTG
GAACCCCAAGTGGAACCCCAAGTGGAATCGGAATCGGAACCGCAGCTCCA
ACTCCAACCCTAACTTCAATTTCAAGGTCAACTCCAACTCCAGCCCTAAC
TTCAATTTGGCAAGGCTGGCGGGGCAAACGGCGCGAAACGTCAGCCGAGC
GTCCCGAATCTTTTGGGATCACCCGCTGGGGGAGGGGGCAGCGCCGGCGG
CGCTAGTGAAGCAGGTGCTGGCGTGGGCGGAGCTGGGGCCGGAAACGGAA
CTGGAACCGGAAACGGAACTGGAACCCCAAGTGGAACCCCAAGTGGAATC
GGAATCGGAACCGCAGCTCCAACTCCAACCCTAACTTCAATTTCAAGGTC
AACTCCAACTCCAGCCCTAACTTCAATT
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