mRNA_H-paniculata_contig4285.10959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4285.10959.1
Unique NamemRNA_H-paniculata_contig4285.10959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4285.10959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4285contigH-paniculata_contig4285:14827..15300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930303.3013077-CDS-H-paniculata_contig4285:14826..153001622930303.3013077-CDS-H-paniculata_contig4285:14826..15300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4285 14827..15300 +
1691481233.031499-CDS-H-paniculata_contig4285:14826..153001691481233.031499-CDS-H-paniculata_contig4285:14826..15300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4285 14827..15300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4285.10959.1prot_H-paniculata_contig4285.10959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4285 14827..15300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4285.10959.1

>prot_H-paniculata_contig4285.10959.1 ID=prot_H-paniculata_contig4285.10959.1|Name=mRNA_H-paniculata_contig4285.10959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MKGTAETCQLCHKLGHAVTQCKGGRRAFSNIKTFDGNCSHCGKHGHRGEG
RWGAKGDDKRTKDQGLCWVCGSSEHVARRCPKRHHDTDAGAAALMVTIRG
PKAMTVVTDDRKTIDNPAVTGENEDWNSDTRARDHMTSDETAFEDYTPAL
QGTKREIA
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mRNA from alignment at H-paniculata_contig4285:14827..15300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4285.10959.1 ID=mRNA_H-paniculata_contig4285.10959.1|Name=mRNA_H-paniculata_contig4285.10959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig4285:14827..15300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGTACAGCGGAAACTTGCCAGTTGTGCCACAAGCTTGGGCACGC
AGTTACTCAATGCAAGGGAGGTCGAAGGGCATTCTCGAACATCAAAACGT
TCGACGGAAATTGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGGT
CGCTGGGGCGCCAAAGGAGACGATAAAAGAACAAAGGATCAAGGCCTATG
CTGGGTGTGCGGCAGCTCAGAACATGTCGCGAGACGGTGCCCAAAGCGTC
ACCACGATACGGACGCAGGGGCAGCAGCGCTCATGGTTACCATAAGAGGA
CCCAAGGCAATGACGGTCGTAACTGACGATCGCAAAACAATAGACAACCC
TGCCGTGACCGGAGAGAACGAAGACTGGAACTCAGACACCCGCGCGAGAG
ACCACATGACGTCGGATGAGACTGCATTCGAGGACTACACTCCAGCCCTG
CAGGGGACCAAGCGTGAAATCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4285:14827..15300+

>mRNA_H-paniculata_contig4285.10959.1 ID=mRNA_H-paniculata_contig4285.10959.1|Name=mRNA_H-paniculata_contig4285.10959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4285:14827..15300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGTACAGCGGAAACTTGCCAGTTGTGCCACAAGCTTGGGCACGC
AGTTACTCAATGCAAGGGAGGTCGAAGGGCATTCTCGAACATCAAAACGT
TCGACGGAAATTGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGGT
CGCTGGGGCGCCAAAGGAGACGATAAAAGAACAAAGGATCAAGGCCTATG
CTGGGTGTGCGGCAGCTCAGAACATGTCGCGAGACGGTGCCCAAAGCGTC
ACCACGATACGGACGCAGGGGCAGCAGCGCTCATGGTTACCATAAGAGGA
CCCAAGGCAATGACGGTCGTAACTGACGATCGCAAAACAATAGACAACCC
TGCCGTGACCGGAGAGAACGAAGACTGGAACTCAGACACCCGCGCGAGAG
ACCACATGACGTCGGATGAGACTGCATTCGAGGACTACACTCCAGCCCTG
CAGGGGACCAAGCGTGAAATCGCCATGAAAGGTACAGCGGAAACTTGCCA
GTTGTGCCACAAGCTTGGGCACGCAGTTACTCAATGCAAGGGAGGTCGAA
GGGCATTCTCGAACATCAAAACGTTCGACGGAAATTGCAGCCACTGCGGG
AAACATGGACATCGCGGTGAGGGTCGCTGGGGCGCCAAAGGAGACGATAA
AAGAACAAAGGATCAAGGCCTATGCTGGGTGTGCGGCAGCTCAGAACATG
TCGCGAGACGGTGCCCAAAGCGTCACCACGATACGGACGCAGGGGCAGCA
GCGCTCATGGTTACCATAAGAGGACCCAAGGCAATGACGGTCGTAACTGA
CGATCGCAAAACAATAGACAACCCTGCCGTGACCGGAGAGAACGAAGACT
GGAACTCAGACACCCGCGCGAGAGACCACATGACGTCGGATGAGACTGCA
TTCGAGGACTACACTCCAGCCCTGCAGGGGACCAAGCGTGAAATCGCC
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