mRNA_H-paniculata_contig42828.10955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42828.10955.1
Unique NamemRNA_H-paniculata_contig42828.10955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A7S4HNZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HNZ6_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 1.560e-24
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLA+SGL VVGRDRYGVFPLKGKLLNVR+A+N+Q++ NDEI
Sbjct:   44 CTLILTEGDSAKTLAISGLSVVGRDRYGVFPLKGKLLNVRDASNKQIMDNDEI 96
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A8D8A7V5_CULPI (DNA topoisomerase 2 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8A7V5_CULPI)

HSP 1 Score: 94.4 bits (233), Expect = 1.210e-23
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAVSGLGVVGRD YGVFPL+GKLLNVREAT++Q+++N EI
Sbjct:   47 CTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVREATHKQILENAEI 99
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A183MCP0_9TREM (Uncharacterized protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183MCP0_9TREM)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-23
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAV+GLGVVGRD YGVFPL+GKLLNVREA+N+Q+++N EI
Sbjct:   36 CTLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASNKQIMENAEI 88
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A3P8ANJ8_9TREM (Uncharacterized protein n=2 Tax=Schistosoma mattheei TaxID=31246 RepID=A0A3P8ANJ8_9TREM)

HSP 1 Score: 94.0 bits (232), Expect = 1.580e-23
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAV+GLGVVGRD YGVFPL+GKLLNVREA+N+Q+++N EI
Sbjct:   44 CTLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASNKQIMENAEI 96
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.780e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREAT  QV+KN+EI
Sbjct:  397 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATGPQVLKNEEI 449
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A7S4PCW2_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PCW2_GUITH)

HSP 1 Score: 90.9 bits (224), Expect = 1.540e-22
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAK LAVSGL V+GRDRYGVFPLKGKL+NVREATN QV  N E+
Sbjct:   16 CTLILTEGDSAKALAVSGLSVLGRDRYGVFPLKGKLINVREATNLQVKNNTEL 68
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A183X145_TRIRE (DNA topoisomerase 2 n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X145_TRIRE)

HSP 1 Score: 93.2 bits (230), Expect = 1.710e-22
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAV+GLGVVGRD YGVFPL+GKLLNVREA+++Q+V+N EI
Sbjct:  116 CTLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASSKQIVENAEI 168
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BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A2L0BT60_9CUCU (DNA topoisomerase 2 (Fragment) n=1 Tax=Cryptamorpha sp. CSR144 TaxID=2055368 RepID=A0A2L0BT60_9CUCU)

HSP 1 Score: 96.3 bits (238), Expect = 1.780e-22
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAVSGLGV+GRDRYGVFPL+GKLLNVREAT++Q+++N EI
Sbjct:  262 CTLILTEGDSAKTLAVSGLGVIGRDRYGVFPLRGKLLNVREATHKQILENAEI 314
[Close]
BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: A0A2L0BSY6_9CUCU (DNA topoisomerase 2 (Fragment) n=1 Tax=Trigonodera sp. CSR050 TaxID=2055562 RepID=A0A2L0BSY6_9CUCU)

HSP 1 Score: 97.1 bits (240), Expect = 2.140e-22
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAV+GLGV+GRDRYGVFPLKGKLLNVREAT++Q+++N EI
Sbjct:  357 CTLILTEGDSAKTLAVAGLGVIGRDRYGVFPLKGKLLNVREATHKQILENQEI 409
[Close]
BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Match: UPI001884AC1F (DNA topoisomerase 2-alpha-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884AC1F)

HSP 1 Score: 96.7 bits (239), Expect = 4.570e-22
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKNDEI 159
            CTLILTEGDSAKTLAVSGLGV+GRDRYGVFPLKGKLLNVREA+++Q+++N EI
Sbjct:  465 CTLILTEGDSAKTLAVSGLGVIGRDRYGVFPLKGKLLNVREASHKQILENQEI 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42828.10955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HNZ6_9EUKA1.560e-2484.91Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8D8A7V5_CULPI1.210e-2384.91DNA topoisomerase 2 (Fragment) n=1 Tax=Culex pipie... [more]
A0A183MCP0_9TREM1.270e-2383.02Uncharacterized protein n=2 Tax=Schistosoma TaxID=... [more]
A0A3P8ANJ8_9TREM1.580e-2383.02Uncharacterized protein n=2 Tax=Schistosoma matthe... [more]
A0A6H5KFS2_9PHAE2.780e-2392.45DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S4PCW2_GUITH1.540e-2283.02Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A183X145_TRIRE1.710e-2283.02DNA topoisomerase 2 n=1 Tax=Trichobilharzia regent... [more]
A0A2L0BT60_9CUCU1.780e-2284.91DNA topoisomerase 2 (Fragment) n=1 Tax=Cryptamorph... [more]
A0A2L0BSY6_9CUCU2.140e-2284.91DNA topoisomerase 2 (Fragment) n=1 Tax=Trigonodera... [more]
UPI001884AC1F4.570e-2284.91DNA topoisomerase 2-alpha-like n=1 Tax=Pollicipes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42828contigH-paniculata_contig42828:946..1104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog2880.D7G0Y6
Preferred nameTOP2
KEGG koko:K03164
KEGG Pathwayko01524,map01524
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930302.7140076-CDS-H-paniculata_contig42828:945..11041622930302.7140076-CDS-H-paniculata_contig42828:945..1104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42828 946..1104 -
1691481232.7702188-CDS-H-paniculata_contig42828:945..11041691481232.7702188-CDS-H-paniculata_contig42828:945..1104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42828 946..1104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42828.10955.1prot_H-paniculata_contig42828.10955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42828 946..1104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42828.10955.1

>prot_H-paniculata_contig42828.10955.1 ID=prot_H-paniculata_contig42828.10955.1|Name=mRNA_H-paniculata_contig42828.10955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATNQQVVKN
DEI
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mRNA from alignment at H-paniculata_contig42828:946..1104-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42828.10955.1 ID=mRNA_H-paniculata_contig42828.10955.1|Name=mRNA_H-paniculata_contig42828.10955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig42828:946..1104- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCACCCTCATCCTTACCGAGGGAGACTCCGCCAAAACGCTGGCCGTGTC
AGGGCTCGGTGTGGTTGGTCGGGACCGATACGGTGTGTTCCCTCTGAAGG
GTAAGCTGCTCAATGTACGCGAGGCTACCAATCAGCAAGTGGTGAAGAAC
GACGAGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig42828:946..1104-

>mRNA_H-paniculata_contig42828.10955.1 ID=mRNA_H-paniculata_contig42828.10955.1|Name=mRNA_H-paniculata_contig42828.10955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig42828:946..1104- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCACCCTCATCCTTACCGAGGGAGACTCCGCCAAAACGCTGGCCGTGTC
AGGGCTCGGTGTGGTTGGTCGGGACCGATACGGTGTGTTCCCTCTGAAGG
GTAAGCTGCTCAATGTACGCGAGGCTACCAATCAGCAAGTGGTGAAGAAC
GACGAGATTTGCACCCTCATCCTTACCGAGGGAGACTCCGCCAAAACGCT
GGCCGTGTCAGGGCTCGGTGTGGTTGGTCGGGACCGATACGGTGTGTTCC
CTCTGAAGGGTAAGCTGCTCAATGTACGCGAGGCTACCAATCAGCAAGTG
GTGAAGAACGACGAGATT
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