mRNA_H-paniculata_contig4278.10945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4278.10945.1
Unique NamemRNA_H-paniculata_contig4278.10945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4278.10945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4278contigH-paniculata_contig4278:5769..13914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size1524
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4278.10945.1prot_H-paniculata_contig4278.10945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4278 12666..12842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930300.7150228-UTR-H-paniculata_contig4278:5768..58321622930300.7150228-UTR-H-paniculata_contig4278:5768..5832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 5769..5832 +
1691481231.849599-UTR-H-paniculata_contig4278:5768..58321691481231.849599-UTR-H-paniculata_contig4278:5768..5832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 5769..5832 +
1622930300.737577-UTR-H-paniculata_contig4278:8907..89841622930300.737577-UTR-H-paniculata_contig4278:8907..8984Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 8908..8984 +
1691481231.8577735-UTR-H-paniculata_contig4278:8907..89841691481231.8577735-UTR-H-paniculata_contig4278:8907..8984Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 8908..8984 +
1622930300.7551959-UTR-H-paniculata_contig4278:12531..126651622930300.7551959-UTR-H-paniculata_contig4278:12531..12665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 12532..12665 +
1691481231.8652625-UTR-H-paniculata_contig4278:12531..126651691481231.8652625-UTR-H-paniculata_contig4278:12531..12665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 12532..12665 +
1622930300.7912397-UTR-H-paniculata_contig4278:12842..139141622930300.7912397-UTR-H-paniculata_contig4278:12842..13914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 12843..13914 +
1691481231.8904123-UTR-H-paniculata_contig4278:12842..139141691481231.8904123-UTR-H-paniculata_contig4278:12842..13914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4278 12843..13914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930300.7763155-CDS-H-paniculata_contig4278:12665..128421622930300.7763155-CDS-H-paniculata_contig4278:12665..12842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4278 12666..12842 +
1691481231.8780856-CDS-H-paniculata_contig4278:12665..128421691481231.8780856-CDS-H-paniculata_contig4278:12665..12842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4278 12666..12842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4278.10945.1

>prot_H-paniculata_contig4278.10945.1 ID=prot_H-paniculata_contig4278.10945.1|Name=mRNA_H-paniculata_contig4278.10945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MMVYPQAALMERMMGRHKCARDACSSRPSYCMTGSPNREFCTQHACARMI
DNRGKQVG*
back to top

mRNA from alignment at H-paniculata_contig4278:5769..13914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4278.10945.1 ID=mRNA_H-paniculata_contig4278.10945.1|Name=mRNA_H-paniculata_contig4278.10945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8146bp|location=Sequence derived from alignment at H-paniculata_contig4278:5769..13914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGTTGGGATAAGCGTGCACAGTGCCCGTTTCTATCCTCCACATCGAGTG
ACCGCTTTTGAAAGGTGAGTACCTTTACATTGTATCCTTCTTTCGAGATG
GCTATGTTGTATCGCCTGCGTAGTTCACATGTCTTTCTTATTGATTTTAG
TAACCACATACGCCGGTGCAGTCATTTGGATTGTCGCCTTACCTAGACCA
ACTATGTACCATAGTGTAACCTATTGCCCACGCACACCTAGTCACGCTCG
CTGGTTAGTTGGTACCGATAGAGAGTCGTAACGCCCGAAGTACTGGCAGC
ACTTTGAAGTTTATAAAATGTTTCGAAAATGATGCAAATGCTGAAAAATA
CCATACAGCCAGTACAGATGCGGCAGGACACTAACAAACAGATTACAACT
GTACAGTAGTGGATATTCGGTTTTAAGAGAGGCTGATGATAAGCCGAAAA
TCCTACCATAAGTCTTGATCCTCTCCTGTTTTATTCAAGAAAAAACTGTT
TAAATCAGTCAAAACCAGTTCTGAGATGTTGTGAATGGTTTCGCACAAAA
CGCACTCTTGGTCATGGTCGTCCATTGAGCTGGAAGAAGTCTGTGTGCAT
CTCGGGAAAAAACAAGAGGTTGTAAACGAGCACGTTTCGTGGTCATCTGC
TCAGGTCGACTGGATTGAAACCGAGGTGATGTCAAGTGGATGATGTACAG
CACTGGTCATTTTCCACGTCTCTGCTCGATTTAAAAGAGATTCGGCGTGA
GCAGCTCAATACCTCTCTTAAATCTAAAAAATTGGTGACATGGCAATTTA
ACCTCTCTTGGATCCTGATTTCCCTTCAATAGACCGCTCTTAGACTCATG
TAGTTCAGAAAAAATAGGAAATTCGGGACAAGAAATTGAGCTCATATTAC
GGCAGAGCCTAAGAAGCAGGCAAACAAAAAAAATGCATATTCAGCCCTAC
GGCGGATTAGAAACACTGTGGTTATTGATCCTCGGCGAGAAAAATAAATG
CAGTACAACACCTCATGGACAGGCCGTTTGTGCGGCGTGGGGTGTTCGTG
TAGCCTGGGCTAGGCTGCTTTGGGGGAGTAATTACAATTGAAGTGACGGG
TGTGCACGTACAACCGTGACTGACTACCGTATGAGAGGTCTTTTAGTCGG
TGCAACCCCCACACTGCCTACTCGGTTCGGCCGAACCGGGGTGGTGCCTA
CCCCGGAGAGGAATAAATAACTCTGTTCTGTTAAAGGAAGTGTAGAAATA
CTTTGGCAAAATACTTGAGTATGGAAGCATCGGTAAAGGTTTTTTCCTCA
TCCTTACGGAGGTTAAAAAAAAAAAAAAAAAACGTGTGACGTGGGTTCGC
GACCAGAGTACCGACAGCATGAAAATACTCTTCAAAGCGTACGAAACGGC
GGGGGATGTGGGAGAGTGGGTATTGCTAGAGTTAAACATCGCGGGGCCGC
CTCGAGTAAGTAGGTCCGGAAGGCGGCCGCTCCCCGACATTCGAAGCATG
ACGCTTCCGGCGTGAAAAGGTGATCGTAGTGTGCACAAAATACAGTTTTT
TTCGCTTCACAAAGGAACTCGTGTACAAGTAAGTATAAGAAGTACAGCTC
AACCTGCCGCCCGAAATAAAGGTGCTGAGCCTCAAACCAAATAAGAGTTT
CTTATTAGCGGGCCGCATTTATATACAAGTAAAGGTAGTTTGTTTCGAGA
ACAACGAGCAATAATATTCCATACTTGTATTGTATTGTACTTTGCAAGCC
CTCGAGGCTAGTTAAAGCTCGAGGATTTGCACTTGCTCGTCAAAAGATGT
GATAACACCTTCAACAACTGGAGGAGTTCTATTTTGTGACGATGGAATTA
AAGAGCACGACTGCAACAACACGCATAACTCTGACACATCTGATACATAG
TGCGACCAGCGGTTAAAAATTGCCGGTAATTCAACCTCCCCATTTTTATG
GTGGGAAGCGGCGAAGGGTTTGCTATTAAGGTGTTCGGGGGCGAAGGCTC
GGCCTCCGCCGCAGGGGTGGCGGGCATAGGATCCAGGGGGAGCCATAAGT
TACGGATCATCTTCACGGACGGATGATAACGATGCATACGTCCCTACAAG
CTTGTTCGTTATCCGCACGATCCGAGCTGCTAGCGTATGTCGGTCCACAT
TTCATCCCTACGATGCAGATCGTGAGCAAATGTTTGTCCACCACTGATCT
ATACCATGTGAATCCTTGAGCACATCCTTATTCACGGCTGATCGATACGA
GCCGAGTCGCACAGACAGTGATCGCCCTGCTGTGTAAAGCGTTTTTTCTT
CATTTTCTCGCCCAAGATGTGCAGTTTGACATCGTTTGGACCAAGTCATG
TGGTCGATTACCATCAGTGCTCCTCGAGACCTTTGGGTGCTCAACCTCTC
CACTCGTTGGTGCTTGTAGTGTGACACTTTAGGACACGCGAAATCTCACA
ATCTATATGTCTCAACAGGACAGAGGGGTACTGGATACTTTTCCACAAAC
AGAGCAAACTAGGCAAGGTGGGCGTACTCACGTTTTTTATGCCAGACTTG
TGAGACCACTAGTCATATGTGTTGGAGAAGACGAAGCTTTGTTCCTATCT
GAGCGATCTCCGATGACCACTCGCTGTTTTCTACGTCTCTCAAAAGGCAT
GATTCTAATACTATCTATCTCAGCCCTCGACTTTTCAGGCCATTTTCTGT
CTCGTAGAACCGTAATCGCCCCCATTGCGCAACTCCGGGATTGAAATGCT
CGTCTATCACACCAATCAATTTTGTCCAAGTCGCCTATATATATCTTTCT
CATTCAGAGGGCATTCTCCCACCATCTGACTTCGGTCCCCACAAGCATTA
GCGTAACTACACTTGAACATCGAATCGTTTTCCTCGTTAACTCTCCTGAG
ACATTTTCTGCGGTCCTTCAGGTCAACATCCCCCGTCCTGAATTCGACCT
TCAACTTTGTGCCTATATCCAATGGTCAATGAAAGCATCCCTTCAACGCT
ATCCTTTCCAACCAATTTTCGGTGTACTTCCGGATCGTCCTTAATCGCAG
CTTCTCTTTTCAGTTCTTGCTTGTTCTTCTCTCATTGCAATTGCACCGGT
TGTCTCCTCCTTAAATCCACTCATACCCTCGCTCTTCAGTGCTTCTTCCT
AGGGGGTGCTTTTTGGAGCGGAGGGGGGCGTACCAATTTAAGGCGGACAC
GGTTGCGTTGGCCGGGGTGAGATCAGATCCATCAATCGAAACCAGAGGAA
ATTAGTGTCGCAAGCGGCATTTCAAAAGAAATAATATCGAAAGTACAAGT
GTAGACTATGGCCGTTCTCATTTGACGTATGTCGAGGGCTCGTTGCTGCA
GCCGTAATGCTGTATGCCCTTTATGTGGAGGTTGTACAGCAGCTGGCAGA
CTACAGTGCTTCCCTTGGTTCGATCGGGTGGTGGCAGTCAGCTGGACAGC
GTAAACATCACGATAGAGTAGAGTAGCATACCGCGACGGAAAAAACAGAC
AGTAGCACAGACTGTTCACCCTTTGACGGGAGTAGAGTTTCGTGAACTTG
CTGCGCTCGCAAAGGGGCTCGCCTAGCAATAAACACTGCTCGCTGGCTGC
ACTTGCACTAATGAGTCACTCGAGAACAGACTCGAAACGTTGTTGCGAAA
CAATGACCACCACGACCATTTTGCCGTATTGAAGGCTCAAGATAGAGACT
TCCAGTACACTTAAGGTGATGGTCTCCTCGAATAATATCCCTGATGCTGT
ACTCAACGTAACTTCTGAAAATCAATCTTCATGGGCATGGTGCCTACATG
AGGACCTAGCAACCTGTTGCGACCGCAGCTCGCCGTTGTGGGTGTATCAC
ATGTTTTATATAGATGAGTACAAGGGCGAAACACGGACTGCACGCTACTA
GAACAGCTTCCCGCTATCAGTTGCAGCTCACGTTGTCCCTCCTGTTGCAC
CATGAAAAAATAGAATCAGGTAATTACAACTACTATGATGTGTGGCATTA
TGCCATCCATCTTTCTCGCTCTGTACGCCACTTGTTGAAACGTAATTTTT
GTATCATTTTTTTTGTCATACTCCAGGCAAAATCAATTTTCTCTCTAATA
TACACTAATTCAACGTTTATTTACTGTTTTTGTTTTTTAATGCCGTTCCC
ATTGGTCGTGCCGAGGCAATCAAAGGGCCTTTTTTTTTTCTTCTAAAAGT
CGAGAGATAGAAAAAGCACATTCCCCGTAGGATGGCCTGTGTCATTGGTC
ATATCTCACTGGCATTTGGCTTTTTGCTACTAATCGTTGTCATGTACTTA
AGGGCGTTTGGGCCTTCATGTCTAGGCGTAAGGCACAGCCATTCCGGGGC
GGGGAGAGGATGATGTAATGTGGAGAGGGAAGGGTGGAAAAGCGAAGTAT
ACAACAGATAGTATACAAAGGGTATAGAGTAGAATACAGGAGGTAGTAAA
ATAGGTAGGTAGAAATTAAAGGAGGGTGGCACGTATACGTAACCACCTGA
GTCAACCTATGATCCACCGCAACCAAACATGCCAACCATATATAAACTCC
ATGTAACCGAATGGTCACATAACCGTCGCTTTATCGATCATACCCAATAG
CTACAGTACTCAGGGAAACAAATATGCGTTAGACACGTATGGTGTCGGTA
AAAAACACGCGTTGAGAAATATGTGTTGGTAGCTACCATCTGATTTTTGC
AGAATCGCGAGTTAACTTCATTCACAGTGGTGTATGTTGCCGGAGTTTTC
AAGTTTTCCGTCCATTGCACCACACTCTTATTCTTTTGTAACCTGTGGTA
TATATCCCTGCTCACGGAGCGTCCTTTGCATTTGGTTTAGGGTCAGCAGG
CTCAGCTTCACTTATATTATGTTACATCCGTAACTGTTAACAGGATCATG
CAGCTTAGGTTGCTGTGATGCTCATGGGACACTCGATGTTGCGTTGCAAT
ATGGTCACAGGATTACAACAACTTTTGCACGCTCTCTCTAATGTCCAGTA
TGCGATTGAAATTTGACCTGTGGACCGAACATAAAGTTGTACAGTTGCCT
TGCAATTTTCAAAGTAACAAATTGACAATAGCGACCAGGGGTTACACGGA
AGGCAGGGCTTGAACCAACCCCACCCACACACTTTTGTTTCGCCCTCTAT
CGCACTGCTGTGCTTGGTAGTTACTGCTGGGCCGTGTAGGTGTCCTGTAG
GCCTTTATGTACGCTATGCAAGTGCCACTGCATATGTTTAGCACATGCAA
CAGTGTAGAGCATGTAATCAGTGATGCGGCATCACCTTGTCCGACGTCAC
GTGTTCGTCTCGCATTGATTCCGATCGAAAGTCGACTTTGCATTGCATGA
TTCATATTTTGACTGCGCAGACCCGTAGATCGAAAAGAGGTATCAAACTA
GACTTTGGACAAGCGTGCATAGATGCTCATCTGCTAGCTGTTTAAAAAAA
ATGATGTAAACCAGATAACAGGGACATTCTCCAGCACGGCAATTCTGCTG
CAAATTATTATTTGAAAAAATCAAAATAACACCATTCGGTTAACGTCTGA
TAAACAGACTTACTATCAGAATTGTCACTTAACTTTCAAGTATTGCCTAT
TTGGATCTGAAAAAGCAAAAACAAAATATAAGAATAAGAATAAGATTAGT
AAAAGGTATTTGTTGTGGGGCCTCACCTATTTGTTGTTTCACTTCTTGTG
TGACGCACCGTTTTTGCGTCTTTCGTGAATATGGTAATACACATAATACC
CTTTATTCATTGATGGTACAGAATACATTGTAATCAGTGAAATATGAGGG
ATAAAAATTAAGTATTGTAGTGACAATTAACAAGGTTACACCGATCGATG
TGGTCAAATACTATTAGTTTGAGTACAAAATTGCATGGGTAGGGTAATGT
ACAACGTAGTGGTCCAAACTGTTAGATCGGTGAGCACCAGTTGCTACTAA
TAATGTAATTCACGGTTGGTGGATAGTACAGCATGTCGTAACATGGTCAT
ATAGGGTTGCCGTGTGTATTATAAATAATTGTACATATAAGAGTTTACAT
AGTGGTTGTACGTATGAATAAGCTTCGTATCTTAGTATATTGGGGAGCGT
ATACTAGGTTGCTATTTACTTGTTGAAATATATATTTATATATATATATA
CGTGTATATATATAATGATTATTATGTGTTTTTGTTCATATAGCCTCCGT
GATACCGCAAAGACCTAGAAACTTCTTTCTGCACCACTAAATTAATCCAT
ACGCCATCCACTATTAGCGTGCCGATGTCCACCAAATTTTGGCAAGGTTT
ACTTTGGGCACTATGAGTAGCTTCTCCTAGCGAAATAATTTGCCCCGTAG
GAGTGCTACTGCTATACTCTCCCGCCGACGCCGCATTACTGCCACCCCCC
TCCGACATGATCGTCCGCGATTTTTGGATCTGGGCTCCCCAAAGCTGCTG
TGGAGGTTCTGTACTTTTTTTGTTTTTGTTTTTTTTAACACTGGATAGCA
ACAGATGACCCGCGAAGTGCTGGATAACATTTTTATACACCCCTATTACA
ATCCCACCCAAATGCCCTTATCGCATTTTTTGGGGCCTTGTACAAGTCCC
ACCTTTCGTTTGAATAAATCAACATAGAAGATAGAGAAACGAGAACTCGC
TGCTGTTCTGATGGTTGCGCTCCACTTGTGTTGGACCCTTTCGCGTATAT
GTCCATGTGCAACCGCTTCGTGTGTCTTGTTTGTTCCTGTTCTTCACGAT
ACTTGGTTTTCAGGACGACCGTGTACCACCTGCCTTGTGTCTTCAAGAAG
GTGCTGGTTCTTGCGTGCGTTACCTTGAACTTGTTGCGTGTGCTTTGCTG
GTTCGGGCACCTAACAGCCGAAGTCCACAGCTCTGCGTGGCCTGCTGATG
ATGGTGTACCCACAAGCAGCGTTGATGGAGAGGATGATGGGCAGACACAA
ATGTGCTCGCGACGCTTGCTCCTCTCGGCCATCGTACTGCATGACTGGTA
GCCCCAACAGGGAATTCTGCACCCAACATGCCTGTGCCAGAATGATCGAT
AACAGGGGCAAGCAAGTGGGTTAAGGAGGGTTGCTTCGCGATTCTGACGT
ACTTTGCAGTGGCTCGCGAGAAGACGGAAGTCCGCGGTCAACACGCCAAG
GTAGGGGTGGTCATCGTCAGCATCGAGAATTACGGCGGGGAGGATGGGTC
CACGATTCCGTCGCACGATGCGGTGAGTCGTGGGAAGGTGATGGTCTGCC
CCCGGCACGCCAATTCAGCTGTTGGATGGCGTATGTGAGGGGAAGAAGAA
CGATGAAAGCCTGAGCTGCCCTGGGTAATTGGCGTGCGGTACTAACGATA
CGCAGAGGACGAGCCCTTCTGCGGCAGTCATACTGCAGACATTATTGGCA
TGTATGATTCAGAAGTGCGTGCAAGAAGAGAGCCCTATCTCCAGCCGCGA
CCTTATCGAAACATCAATATATCAGCAGCGTTAGTGGACAGGGAAGAATC
GCAAGCATCCCGGCAGTGCTCTTTTCAGTGGTGCAAGCTGTCGTGTTATT
TCTGGCAGCAATGGACGTGACAATGCGAAGCGGGTTGTAATAGCATACCG
CTGGTGTTGGGGCAGCTCGTGTCAGGGGTGGTATCGGGGCAATCCGGGGC
AGTAGACGTCGACTTGGTGATTGACGAAGCAGAAGTCGGGGTCAAGATGG
AGTTTGCAGCCTTGGCGTCGCCTTCTCCGTGTTTTTTTCCACTTAGTCCA
TACAGTCTGGGCACTCACTGTCAACGAGTCCTTGGCATATCGAGTTGTTC
GACATTTCAGCGAATCTCTTGTGATCGCTAATTAGCCATCAGACCGAGAA
GAGAAAATCCTGTGCCGGTAGCTGGGTATAGGCTCAGCCCCAATTATACT
TGTTTTCCTGTTTGGGGAAACAGTGAGATTCTTGACATGATCGGTGATCA
TTGGTTTCGGTTCCTGCTTGGGTGTAATATGAACATATACGTCCAACACC
CGCCTGCTCCGAGATGGTACTGCTGTGGTAAATGCATTAGAGCCTGGATG
ACTGTTGCACAGTATAACTAAACACAAGAGAGGGCAATTCTAACGATGCA
GCTGTGGCCCCTCCCTATTTTATTGATATTTTCGAGGAGTTTTCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4278:5769..13914+

>mRNA_H-paniculata_contig4278.10945.1 ID=mRNA_H-paniculata_contig4278.10945.1|Name=mRNA_H-paniculata_contig4278.10945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig4278:5769..13914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTGTACCCACAAGCAGCGTTGATGGAGAGGATGATGGGCAGACA
CAAATGTGCTCGCGACGCTTGCTCCTCTCGGCCATCGTACTGCATGACTG
GTAGCCCCAACAGGGAATTCTGCACCCAACATGCCTGTGCCAGAATGATC
GATAACAGGGGCAAGCAAGTGGGTTAAATGATGGTGTACCCACAAGCAGC
GTTGATGGAGAGGATGATGGGCAGACACAAATGTGCTCGCGACGCTTGCT
CCTCTCGGCCATCGTACTGCATGACTGGTAGCCCCAACAGGGAATTCTGC
ACCCAACATGCCTGTGCCAGAATGATCGATAACAGGGGCAAGCAAGTGGG
TTAA
back to top