prot_H-paniculata_contig4277.10942.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4277.10942.1
Unique Nameprot_H-paniculata_contig4277.10942.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length375
Homology
BLAST of mRNA_H-paniculata_contig4277.10942.1 vs. uniprot
Match: D7FVC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVC1_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 4.410e-80
Identity = 151/289 (52.25%), Postives = 201/289 (69.55%), Query Frame = 0
Query:   63 PGKIYALCLACRPWTAQKALLAIVALVAALRVAWAVMASHAWDAGTGLIRGIVHQSTRISFYSVGFFEAAAIFTLFTMVARFWAELASAARQRTISTRPLGGGDEYRPRGTPPVIWKIAQAVQRVSCAVAYAAAAIASLLQATIWLSDDVYVSPSVAVFEAAAYILAALVMGTFAHYAIAELRLVPIELPTRRRRVFRIAAVTVICTACLIIRAGVLVWAAGRAFPVDTNVEVFCILAYFLLLEALPLAIVLMYNRTTPLSTSRPPTGRIPSVRRR-SLP---EEEPLI 347
            PG + A+  A RP+T QKALL+++ L AAL +AW+V+A  AWD   G +   V  + R++FY   FF AA  FTL+T++A+FWA+LA +ARQ   ++RPLGGGDEYRPRGTP +IWKI + VQRVS  V +AAAA+A++ QA +   D +Y++   A  E   +ILAA VM T A+YA+ ELRLVPIELPTRRRRVFR+ A+T     CL++RA VLVWAAG+   V+T++E+  +L Y++LL ALP +IVL YNR  PLS+     G   +V  R + P   EEEPLI
Sbjct:    2 PGTVMAMLAAFRPFTTQKALLSMLTLSAALSIAWSVLAYEAWDLLHGTLDVSVSVALRVAFYGTDFFLAATTFTLYTILAKFWADLAFSARQGAGASRPLGGGDEYRPRGTPTLIWKITRGVQRVSSTVVFAAAALATVFQAVLVTLDSMYLNLWTAYVEGGVFILAAFVMVTAAYYAVVELRLVPIELPTRRRRVFRVVAMTGSVAVCLVLRAVVLVWAAGKPIFVNTDLEMLALLGYWVLLVALPSSIVLAYNRVVPLSSYSGGRGGTGNVSLRWTAPDEEEEEPLI 290          
BLAST of mRNA_H-paniculata_contig4277.10942.1 vs. uniprot
Match: A0A7S2BXR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXR4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.420e-21
Identity = 82/289 (28.37%), Postives = 136/289 (47.06%), Query Frame = 0
Query:   76 WTAQKALLAIVALVAALRVAWAVMASHAWDAGTGLIRGIV-----HQSTRISFYSVGFFEAAAIFTLFTMVARFWAELASAARQRTISTRPLGGGDEYRPRGTPPVIWKIAQAVQRVSCAVAYAAAAIASLLQATIWLSDDVYVSPSVAVFEAAAYILAALVMGTFAHYAIAELRLVPIELPTRRRRVFRIAAVTVICTACLIIRAGVLVWAAGRAFPVDTNVEVFCILAYFLLLEALPLAIVLMYNRTTPLSTSRPPTGRIPSVRRRSLPEEEPLIGGVERSIEDNVN 359
            WT Q+ L A+V +V  +RV + ++A + WD  TG ++        H   R+ FY+     A  +FT+++ V  FWAEL   A                       +  +    +  +    A+    +  ++ AT W ++D Y++   A+F ++ Y++AA         A  EL+ VPIEL  R++ +  +  +T+I T C++ RA VL+    +   +D  V   C +AYF+LLE LPL +VL++ R  PL +            R  LPEE  L+G    S +  V+
Sbjct:   34 WTTQRILHALVFMVCTVRVVFFLVALNEWDLTTGTLKNYSAGDGWHSFARMIFYASDELPALLLFTIYSAVVLFWAELYLIAADNM------------------SLYEQFLYPLHSICNLCAFLILGMLLVMYATEWKTEDYYITTWYAMFLSSLYLVAASGFWYIGRSAATELKQVPIELQMRKKLLKEVGTITLISTTCMVFRAAVLITVMNQPLYLDRVVPFSCAVAYFVLLEGLPLVVVLVFYRRMPLPS------------RELLPEEGKLLGNQPFSYQGTVD 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4277.10942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVC1_ECTSI4.410e-8052.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BXR4_9STRA3.420e-2128.37Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009457Domain of unknown function DUF1084PFAMPF06454DUF1084coord: 197..322
e-value: 7.3E-11
score: 42.0
IPR040226THH1/TOM1/TOM3PANTHERPTHR31142FAMILY NOT NAMEDcoord: 15..321
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 284..294
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 209..219
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 261..283
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 187..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 220..241
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 147..186
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 295..316
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 242..260
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 317..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 187..209
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 294..316
NoneNo IPR availableTMHMMTMhelixcoord: 262..284
NoneNo IPR availableTMHMMTMhelixcoord: 124..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4277contigH-paniculata_contig4277:3586..6806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4277.10942.1mRNA_H-paniculata_contig4277.10942.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4277 2351..11473 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4277.10942.1 ID=prot_H-paniculata_contig4277.10942.1|Name=mRNA_H-paniculata_contig4277.10942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
MKIDQNPDRLYFVCTLIGACNLIILCAAALALLRVLRAAARDLYNSPRRR
LLELDDGVARRNPGKIYALCLACRPWTAQKALLAIVALVAALRVAWAVMA
SHAWDAGTGLIRGIVHQSTRISFYSVGFFEAAAIFTLFTMVARFWAELAS
AARQRTISTRPLGGGDEYRPRGTPPVIWKIAQAVQRVSCAVAYAAAAIAS
LLQATIWLSDDVYVSPSVAVFEAAAYILAALVMGTFAHYAIAELRLVPIE
LPTRRRRVFRIAAVTVICTACLIIRAGVLVWAAGRAFPVDTNVEVFCILA
YFLLLEALPLAIVLMYNRTTPLSTSRPPTGRIPSVRRRSLPEEEPLIGGV
ERSIEDNVNPFNSQTEIPRAIVHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009457DUF1084
IPR040226THH1/TOM1/TOM3