mRNA_H-paniculata_contig42763.10941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42763.10941.1
Unique NamemRNA_H-paniculata_contig42763.10941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 9.410e-63
Identity = 105/141 (74.47%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWGD-------VPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLLRETR 402
            ELLSIF GQWENG+VPTVRYAPGY  D+LGGSFLPGPG WG          A SA G NTS+LAAIPLHAEAAL+IFDLS R A ARLWLQ+LFP LFRYHDYLH SR DP TGLVYV+HPWETE+SADSA+WP LL + R
Sbjct:  110 ELLSIFRGQWENGLVPTVRYAPGYEADFLGGSFLPGPGGWGGRSSDKNASSAQSAGGANTSSLAAIPLHAEAALRIFDLSPRDAEARLWLQDLFPALFRYHDYLHGSRNDPETGLVYVHHPWETEVSADSALWPSLLADAR 250          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A4D9DAW9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAW9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.040e-25
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 ELLSIFFGQWE-NGMVPTVRYAPGY-GEDYLGGSFLPGPGRWGDVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLLRETR 402
            EL++   GQW   G+VP +R+ P   G  +L G++ PGP +W      SA+  +T+ LAA+P HA  A+++F++  R  A   +L ++FPP+F+YH YLH+SR D    LV+ YHPWE+E+  DS +W   L  T+
Sbjct:   85 ELIACLSGQWPFTGLVPRIRFPPSSEGSAWLEGTYYPGPAQWQTPRDGSAAALSTAGLAALPWHAIVAMQLFNVR-RDDAGLSFLAQVFPPIFKYHQYLHTSR-DAKNHLVFSYHPWESELPGDSPVWSAALAATK 218          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: K8YV71_NANGC (Glycoside hydrolase family 37 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YV71_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 3.860e-22
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 ELLSIFFGQWEN-GMVPTVRYAPGY-GEDYLGGSFLPGPGRWGDVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLLRETR 402
            EL++   GQW + G+VP +R+ P   G  +L G++ PGP +W      SA+  +T+ LAA P HA  A+++F++              FPP+F+YH YLH+SR D    LV+ +HPWE+E+  DS +W   L  T+
Sbjct:   74 ELIACLSGQWPSTGLVPRIRFPPSSEGSAWLEGTYYPGPAQWQTPRDGSAAALSTAGLAAPPWHAIVAMQLFNV--------------FPPIFKYHQYLHTSR-DAKNHLVFSHHPWESELPGDSPVWSAALAATK 194          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A835Z1J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.550e-19
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRY------APGYGE-DYLGGSFLPGPGRWGDVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSR 303
            E++++   QW++G +P+ R+      + G G  D++ G+ LPGP  W     V  +G NT+ALAA+PLHA  AL+++ LS RGA ARLWLQ++FP L+R+H +LH+ R
Sbjct:   21 EVVAVLNSQWDSGFIPSARFPAESANSSGSGNNDWVEGTALPGPRFWRGC--VGRNGDNTTALAALPLHAHVALQVYALSDRGADARLWLQQIFPALYRWHAHLHAVR 126          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A7C1KUD8_9EURY (Glycoside hydrolase n=2 Tax=Archaea TaxID=2157 RepID=A0A7C1KUD8_9EURY)

HSP 1 Score: 85.9 bits (211), Expect = 5.160e-17
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWGDVPAVSA-SGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMW 378
            ELLS+F GQW+NGM+P + Y+P   + Y      P    W    +  A SG  TS +   P+HA AAL I++ +    +A  +L+E+FP L   H + H+ R   G GL Y+ HPW + +  +S  W
Sbjct:   54 ELLSLFRGQWKNGMIPHIVYSPNPSDAYF-----PDAEFWNTTSSKQAPSGLQTSGITHPPVHATAALTIYNRAKNRRSALEFLKEIFPNLLASHRFFHTIRDPLGEGLAYIRHPWASGLD-NSPTW 174          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: UPI001FB22EDC (glycoside hydrolase n=1 Tax=Rhodothermus marinus TaxID=29549 RepID=UPI001FB22EDC)

HSP 1 Score: 85.1 bits (209), Expect = 6.410e-17
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWG-----DVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMW 378
            EL  +F  QW++G+VP + +      D     + PGPG W      D PA  A    TS +   P+HA AA  I+  +   +AAR +L+ELFP L  +HDYL   R   G GLVY+ HPWE+ +  ++ +W
Sbjct:   44 ELRHLFRAQWKHGLVPHIVF------DRRARGYFPGPGVWETHRSPDAPARIA----TSGIVQPPVHATAAWAIYQQARDRSAARAFLEELFPKLAAWHDYLFRERDYYGEGLVYIRHPWESGMD-NAPLW 163          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A1M6UK95_9BACT (Trehalase n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6UK95_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-16
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWGD-----VPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMW 378
            EL  +F  QW NG+VP + +      D     + PGP  W        PA  A    TS +   PLHA AA  I+  +   +AAR +L+ELFP L  +HDYL   R   G GLVY+ HPWE+ +  ++ +W
Sbjct:   57 ELRHLFRAQWRNGLVPHIVF------DRRARGYFPGPQVWETHRCPHAPARKA----TSGVVQPPLHATAAWAIYQQATDRSAARAFLEELFPKLVAWHDYLFRERDPQGEGLVYIRHPWESGMD-NAPLW 176          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: UPI00190A772E (DUF547 domain-containing protein n=1 Tax=Persephonella atlantica TaxID=2699429 RepID=UPI00190A772E)

HSP 1 Score: 84.7 bits (208), Expect = 1.690e-16
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWG-DVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLL 390
            E++S+F  QWENGM+P + + P    D LG  + P P  W  D+   S     TS +   P+HA AALKI++ +     A+ +L+ ++P L + H Y +  R     GL+Y+ HPWE+ +  +S MW  +L
Sbjct:   56 EMVSLFEAQWENGMLPHIVFNP----DNLG-RYFPEPDFWQTDITPFSNKKHLTSGITQPPVHAYAALKIYENAKDKEKAKQFLRWIYPKLIKLHRYFYLERNPDDNGLIYIRHPWESGMD-NSPMWDPVL 180          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A6G8Q9S9_9ACTN (Beta-fructofuranosidase n=2 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8Q9S9_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 2.580e-16
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRW---GDVPAVSASGWNTSALAAIPLHAEAALKIFDLSLRGA--AARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLLR 393
            ELL +F  QW+NG VP + + P    +    S+ PGP  W   G  P    +   TSAL   P  A  A++I+  + RG   AA  +L+E++P L R+H YL ++R   G+GLV +YHPWE+    +S  W   LR
Sbjct:   59 ELLGLFEHQWKNGKVPHIVFNPHAPAE----SYFPGPEHWVSAGLFPDAPPAPPYTSALCQPPTQALGAIRIWKTAPRGDRDAAHSFLREIYPKLLRWHRYLATARDPEGSGLVTIYHPWESGTD-NSPRWDAPLR 189          
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Match: A0A6J4PCC8_9ACTN (GH63 n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4PCC8_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 2.590e-16
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = 1
Query:    1 ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWGDVPAVSASGWNTSALAAIPLHAEAALKIFDLS-LRG---AAARLWLQELFPPLFRYHDYLHSSRKDPGTGLVYVYHPWETEISADSAMWPDLL 390
            E+ S+   QWENG +P + + P    +    S+ PGP  W    A       TS L   P+HA AAL+I  ++  RG   A AR +L E++P L  +H YL ++R   G+GLV +YHPWE+    +S  W   L
Sbjct:   56 EIRSLLDHQWENGKIPHIIFNPEAPPE----SYFPGPEHWASAAAAPDIPAMTSGLCQPPVHAFAALRILQIAEARGEGAAGAREFLAEVYPKLLAWHRYLATARDPEGSGLVTIYHPWESGTD-NSPRWTGAL 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42763.10941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKU2_ECTSI9.410e-6374.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DAW9_9STRA3.040e-2541.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YV71_NANGC3.860e-2238.24Glycoside hydrolase family 37 (Fragment) n=1 Tax=N... [more]
A0A835Z1J8_9STRA2.550e-1944.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7C1KUD8_9EURY5.160e-1737.01Glycoside hydrolase n=2 Tax=Archaea TaxID=2157 Rep... [more]
UPI001FB22EDC6.410e-1738.17glycoside hydrolase n=1 Tax=Rhodothermus marinus T... [more]
A0A1M6UK95_9BACT1.400e-1638.17Trehalase n=1 Tax=Rhodothermus profundi TaxID=6338... [more]
UPI00190A772E1.690e-1635.88DUF547 domain-containing protein n=1 Tax=Persephon... [more]
A0A6G8Q9S9_9ACTN2.580e-1638.24Beta-fructofuranosidase n=2 Tax=Rubrobacter tropic... [more]
A0A6J4PCC8_9ACTN2.590e-1637.31GH63 n=1 Tax=uncultured Rubrobacteraceae bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42763contigH-paniculata_contig42763:152..1240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue1.7e-53
Seed eggNOG ortholog2880.D8LKU2
Hectar predicted targeting categoryother localisation
EggNOG OGs28RAS@1,2QXZV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930300.1653748-CDS-H-paniculata_contig42763:151..3751622930300.1653748-CDS-H-paniculata_contig42763:151..375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42763 152..375 +
1691481231.6549947-CDS-H-paniculata_contig42763:151..3751691481231.6549947-CDS-H-paniculata_contig42763:151..375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42763 152..375 +
1622930300.2099552-CDS-H-paniculata_contig42763:1062..12401622930300.2099552-CDS-H-paniculata_contig42763:1062..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42763 1063..1240 +
1691481231.678777-CDS-H-paniculata_contig42763:1062..12401691481231.678777-CDS-H-paniculata_contig42763:1062..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42763 1063..1240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42763.10941.1prot_H-paniculata_contig42763.10941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42763 152..1240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42763.10941.1

>prot_H-paniculata_contig42763.10941.1 ID=prot_H-paniculata_contig42763.10941.1|Name=mRNA_H-paniculata_contig42763.10941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
ELLSIFFGQWENGMVPTVRYAPGYGEDYLGGSFLPGPGRWGDVPAVSASG
WNTSALAAIPLHAEAALKIFDLSLRGAAARLWLQELFPPLFRYHDYLHSS
RKDPGTGLVYVYHPWETEISADSAMWPDLLRETR
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mRNA from alignment at H-paniculata_contig42763:152..1240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42763.10941.1 ID=mRNA_H-paniculata_contig42763.10941.1|Name=mRNA_H-paniculata_contig42763.10941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1089bp|location=Sequence derived from alignment at H-paniculata_contig42763:152..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGCTGTCGATTTTCTTCGGTCAGTGGGAAAACGGAATGGTGCCAAC GGTTCGATACGCACCCGGATACGGAGAGGATTACCTGGGTGGTTCTTTTT TGCCTGGACCGGGGCGGTGGGGTGATGTGCCGGCGGTGTCCGCAAGTGGA TGGAACACGTCGGCGTTAGCCGCGATTCCCCTTCACGCGGAGGCTGCTCT CAAAATATTCGACCTATCGTTAAGGTGAAAAGCTGATCAATACAAGTAGT TTTGGTTTGTTTGTTTGTTTGTTTGTTTGTCTTTCTGCCTGTCTGCCTTA TTCAAGGTTCAACAATGTTTTTGAAATATTCTACTAAATAGTGTGTGTGT GTGTGTGTGTGTGTTTTTGTGGAAACTCTCAGAATATTTCACAGGTATGA GAGGACCGATCGGATCAGATCAGATCAGATCAGATAATTCACAACTCATA CCGTTCGTTTCGCAACGATAGCTCGTAGTATCGGTACCCTACCGATCTTG AATCACCACATTTGTCTACGGGTGATCCGTGCGAGGCTAGCCAACTCATA CCTATTTTGATCGGTCCGATATGTGGGATGTTCCACCTGTCGATACAGTG TAGTGAAGGAAACAATTCTCGTTAGAACCCAGCTGTTTTTTTTTTCTTCT TTTTTTGCGTGGCTTGCCTCGCTTGTGTGCCTGCTTTCTTACTCCCCCTC ATTTTTTTTTGAAGGTTTCAAGTCCTAAGGTAACGTAGTATGTTCGTGTT GGAAGCTCTCAGAATATTCAACCTATCTTTTTGTCCGCTAGCCTGCCTGC CCACCCATTCACCTGTCCGTCACTCTGTCTGTCTCGCTGTCCATTCCGCT CTCCGTCCCTTTCAATTTCCCTCCCTCTCTTGTCTCTTTTTTCCTCGCCT ACCGGCCAAAGGGGCGCGGCAGCTCGACTGTGGTTACAGGAGCTTTTCCC CCCACTCTTTCGGTACCACGACTACCTACACAGCTCAAGGAAGGATCCTG GGACGGGATTGGTGTATGTTTACCATCCTTGGGAGACTGAGATCTCCGCA GATTCGGCAATGTGGCCCGATCTCCTACGCGAGACGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig42763:152..1240+

>mRNA_H-paniculata_contig42763.10941.1 ID=mRNA_H-paniculata_contig42763.10941.1|Name=mRNA_H-paniculata_contig42763.10941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig42763:152..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGCTGTCGATTTTCTTCGGTCAGTGGGAAAACGGAATGGTGCCAAC
GGTTCGATACGCACCCGGATACGGAGAGGATTACCTGGGTGGTTCTTTTT
TGCCTGGACCGGGGCGGTGGGGTGATGTGCCGGCGGTGTCCGCAAGTGGA
TGGAACACGTCGGCGTTAGCCGCGATTCCCCTTCACGCGGAGGCTGCTCT
CAAAATATTCGACCTATCGTTAAGGAATTGCTGTCGATTTTCTTCGGTCA
GTGGGAAAACGGAATGGTGCCAACGGTTCGATACGCACCCGGATACGGAG
AGGATTACCTGGGTGGTTCTTTTTTGCCTGGACCGGGGCGGTGGGGTGAT
GTGCCGGCGGTGTCCGCAAGTGGATGGAACACGTCGGCGTTAGCCGCGAT
TCCCCTTCACGCGGAGGCTGCTCTCAAAATATTCGACCTATCGTTAAGGG
GCGCGGCAGCTCGACTGTGGTTACAGGAGCTTTTCCCCCCACTCTTTCGG
TACCACGACTACCTACACAGCTCAAGGAAGGATCCTGGGACGGGATTGGT
GTATGTTTACCATCCTTGGGAGACTGAGATCTCCGCAGATTCGGCAATGT
GGCCCGATCTCCTACGCGAGACGAGGGGGCGCGGCAGCTCGACTGTGGTT
ACAGGAGCTTTTCCCCCCACTCTTTCGGTACCACGACTACCTACACAGCT
CAAGGAAGGATCCTGGGACGGGATTGGTGTATGTTTACCATCCTTGGGAG
ACTGAGATCTCCGCAGATTCGGCAATGTGGCCCGATCTCCTACGCGAGAC
GAGG
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