prot_H-paniculata_contig42746.10938.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42746.10938.1
Unique Nameprot_H-paniculata_contig42746.10938.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length148
Homology
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 145 bits (366), Expect = 5.980e-41
Identity = 74/152 (48.68%), Postives = 102/152 (67.11%), Query Frame = 0 
Query:    3 EPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVV------RANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRA 147
            EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R  Y ++HKS +L  LK++ +D+       + N LR   LRSD GGEYTG  F+ FC  +G++Q+F   Y PQ NGVAE++W  +  MAR+  I   +G+ +WAEA+ +A Y LNR+
Sbjct:   60 EPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKGFWAEALNTAAYILNRS 209
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 144 bits (362), Expect = 2.330e-40
Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = 0 
Query:    3 EPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDV-VRANGLRIKRL---RSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRA 147
            EPLEL+HTD+ GP++ +S GG R+AI F DDY+R R  Y ++HKS +L  LK++ +D+ V     ++K L   RSD GGEYTG  F+ FC  NG++Q+F   Y PQ NGVAE++W  +  MAR+  I   +G+ +WAEA+ +A Y  NR+
Sbjct:   60 EPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDISVLHRDSKVKTLIGLRSDNGGEYTGINFKHFCKNNGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKGFWAEALNTAAYIWNRS 209
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A4Y1RBJ0_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBJ0_PRUDU)

HSP 1 Score: 144 bits (362), Expect = 3.070e-40
Identity = 72/148 (48.65%), Postives = 103/148 (69.59%), Query Frame = 0 
Query:    2 TEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            + PLEL+H+DI GP+   + GG R+ + F+DD++RM   + L+HKS A    K+F+  V   +G +IK+LRSD+GGEYT   F +FC E GL+++ + AY+PQQNGVAER  R++ EMARA M    +  ++WAEAV +AVY  NR+P
Sbjct:   37 SHPLELIHSDICGPMQTITLGGNRYFLTFIDDHTRMCWVFFLQHKSQAFNIFKRFKSMVELQSGYQIKKLRSDRGGEYTSLDFSKFCEEVGLERQLTVAYSPQQNGVAERKNRTVMEMARAMMHEKKIPLKFWAEAVNTAVYLQNRSP 184
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.400e-39
Identity = 65/145 (44.83%), Postives = 101/145 (69.66%), Query Frame = 0 
Query:    5 LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            L+L+H+D+ GP+  K+ GGC +A+ F+DD+SR    Y ++ K+  L   K+FE D+  A G +IKRLRSD GGEYTG+ F+++ ++ G++ E +  YTPQQNG+AER  RS+ EMAR  +    + +++WAEAV ++ + +NR P
Sbjct:   44 LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIINRIP 188
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 149 bits (375), Expect = 1.000e-38
Identity = 77/146 (52.74%), Postives = 101/146 (69.18%), Query Frame = 0 
Query:    4 PLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            PLE+VHTDIAGP D  S GG R+ + F+DD+SR    Y L+ KS AL  L++F+    + +G  +K LRSD+GGEYT K F +FC E+G+  + +A YTPQQNGVAER  R+I +MAR+ +    + R +WAEAVR AVY LNR P
Sbjct:  388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCP 533
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.100e-38
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 0 
Query:    3 EPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVV------RANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRA 147
            EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R  Y ++HKS +L  LK++ +D+       + N LR   LRSD GGEYTG  F+ FC  +G++Q+F   Y PQ NGVAE++W  +  MAR+  I   +G+R+WAEA+ +A Y LNR+
Sbjct:   80 EPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRS 229
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.410e-38
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 0 
Query:    3 EPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVV------RANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRA 147
            EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R  Y ++HKS +L  LK++ +D+       + N LR   LRSD GGEYTG  F+ FC  +G++Q+F   Y PQ NG+AE++W  +  MARA  I   +G+ +WAEA+ +A Y  NR+
Sbjct:   80 EPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRS 229
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 148 bits (373), Expect = 1.810e-38
Identity = 77/145 (53.10%), Postives = 100/145 (68.97%), Query Frame = 0 
Query:    5 LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            LE+VHTDIAGP D  S GG R+ + F+DD+SR    Y L+ KS AL  LK+F+    + +G  +K LRSD+GGEYT K F +FC E+G+  + +A YTPQQNGVAER  R+I +MAR+ +    + R +WAEAVR AVY LNR P
Sbjct:  390 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCP 534
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A6A3GEZ0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GEZ0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.970e-38
Identity = 65/145 (44.83%), Postives = 100/145 (68.97%), Query Frame = 0 
Query:    5 LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            L+L+H+D+ GP+  K+ GGC +A+ F+DD+SR    Y ++ K+  L   K F+ D+  A G +IKRLRSD GGEYTG+ F+++ ++ G++ E +  YTPQQNG+AER  RSI EMAR  +    + +++WAEAV ++ + +NR P
Sbjct:   44 LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGVDKKWWAEAVNTSAWIINRIP 188
[Close]
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.910e-38
Identity = 66/145 (45.52%), Postives = 101/145 (69.66%), Query Frame = 0 
Query:    5 LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALWALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAYTPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP 148
            L+L+H+D+ GP+  K+ GGC +A+ F+DD+SR    Y ++ K+  L   K+FE D+  A G +IKRLRSD GGEYTG+ F+++ ++ G++ E +  YTPQQNG+AER  RSI EMAR  +    + +++WAEAV ++ + +NR P
Sbjct:   20 LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGIDKKWWAEAVNTSAWIINRIP 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42746.10938.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC5.980e-4148.68Retrovirus-related pol polyprotein from transposon... [more]
K8Z011_NANGC2.330e-4047.33Retrovirus-related pol polyprotein from transposon... [more]
A0A4Y1RBJ0_PRUDU3.070e-4048.65Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6G0JTE1_9STRA2.400e-3944.83Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3BY51_HIBSY1.000e-3852.74Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
W7TIQ5_9STRA1.100e-3849.34Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TGQ6_9STRA1.410e-3848.03Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A6A2WSU7_HIBSY1.810e-3853.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3GEZ0_9STRA1.970e-3844.83Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A4CGC1_9STRA2.910e-3845.52Integrase catalytic domain-containing protein n=3 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..115
e-value: 6.5E-23
score: 81.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..148
score: 20.54
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..148
e-value: 1.6E-32
score: 114.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..141
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..141
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42746contigH-paniculata_contig42746:65..508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42746.10938.1mRNA_H-paniculata_contig42746.10938.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42746 65..508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42746.10938.1 ID=prot_H-paniculata_contig42746.10938.1|Name=mRNA_H-paniculata_contig42746.10938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
TTEPLELVHTDIAGPVDKSFGGCRFAIIFVDDYSRMRKAYTLRHKSGALW
ALKQFERDVVRANGLRIKRLRSDQGGEYTGKPFRQFCAENGLKQEFSAAY
TPQQNGVAERNWRSIFEMARASMITTNMGRRYWAEAVRSAVYCLNRAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf