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Homology
BLAST of mRNA_H-paniculata_contig4274.10937.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.420e-40 Identity = 82/147 (55.78%), Postives = 100/147 (68.03%), Query Frame = 1
Query: 7 AVARTVVSCLESFYLRRMFALGRFGRRALASAMGEALPRLAGAQPLSSPATSLQHLEKMALDGVRSTVSHALRTLDEATG--DGLILSPIVEEAMADVHGVWKRLLEACRRWGWVEAAPLGLAPGGQKEFGAPLIIRAGRIACLLPK 441
AVA V +ESFYLRRMF GRFGRR LASA+ EA+P + A PLSS +TSLQ L+ +AL+GVR+ A RTLDE D L +SP ++A+ DVHG WKRLL AC G EA PLGL PGG + F P ++RAGR CL+P+
Sbjct: 530 AVALDSVELMESFYLRRMFTAGRFGRRVLASAIREAVPLMHNAGPLSSNSTSLQDLQNLALEGVRNAAEQAFRTLDEENDKDDPLAMSPTAQQALRDVHGFWKRLLLACVEGGRAEARPLGLVPGGMETFVTPFVVRAGRTTCLMPR 676
BLAST of mRNA_H-paniculata_contig4274.10937.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE) HSP 1 Score: 155 bits (391), Expect = 8.830e-40 Identity = 82/147 (55.78%), Postives = 100/147 (68.03%), Query Frame = 1
Query: 7 AVARTVVSCLESFYLRRMFALGRFGRRALASAMGEALPRLAGAQPLSSPATSLQHLEKMALDGVRSTVSHALRTLDEATG--DGLILSPIVEEAMADVHGVWKRLLEACRRWGWVEAAPLGLAPGGQKEFGAPLIIRAGRIACLLPK 441
AVA V +ESFYLRRMF GRFGRR LASA+ EA+P ++ A PLSS +TSLQ L+ +AL+GVRS A RTLDE D L +S ++A+ DVHG WKRLL AC G EA PLGL PGG + F P ++RAGR CL+P+
Sbjct: 128 AVAFASVELMESFYLRRMFTAGRFGRRVLASAIREAVPLMSNAGPLSSNSTSLQDLQNLALEGVRSAAEQACRTLDEEEDKDDPLAMSLTAQQALRDVHGFWKRLLLACVEGGRAEARPLGLVPGGMETFVTPFVVRAGRTTCLIPR 274
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-28_001850.1 |
| Exons | 5 |
| Model size | 654 |
| Cds size | 654 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4274.10937.1 >prot_H-paniculata_contig4274.10937.1 ID=prot_H-paniculata_contig4274.10937.1|Name=mRNA_H-paniculata_contig4274.10937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
EAAVARTVVSCLESFYLRRMFALGRFGRRALASAMGEALPRLAGAQPLSS PATSLQHLEKMALDGVRSTVSHALRTLDEATGDGLILSPIVEEAMADVHG VWKRLLEACRRWGWVEAAPLGLAPGGQKEFGAPLIIRAGRIACLLPKPRN SYSNLGGGGGSAMRVATLQKLAASVPQVVEAACSETFASNDGRGGDAAAA FRGFECISAFSREGSAGG back to topmRNA from alignment at H-paniculata_contig4274:3221..9336+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4274.10937.1 ID=mRNA_H-paniculata_contig4274.10937.1|Name=mRNA_H-paniculata_contig4274.10937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6116bp|location=Sequence derived from alignment at H-paniculata_contig4274:3221..9336+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGGCCGCCGTCGCTCGCACGGTGGTGTCGTGCTTGGAGAGCTTCTACCT
GAGGAGGATGTTTGCATTGGGACGCTTTGGGAGGCGGGCTCTGGCTTCGG
CTATGGGCGAGGCGGTGCGTGTTTGTGTGTACGTGTATCTGTTTGTTTTG
ATGTTGTGAGCAAGTTGTGTATGTTGCTGTACGGAGTATGTCAGCAATCG
TTGAGATGTGCTTAATTCGATGTGTGTCTTTGTGTCTGTGTGTCTGTGTG
TGTACACACTAGTTGAACCGTTTTTTTAGGTCATTGCTCACTACTCCAAC
CATCAAAGGGCCTGAGATTGATCCCACCACTTTAAGGACGTAGTGACTTT
TTGTGTGCCCTAACCGGCTAGAATTGAAGAGTCCAGAATAGTACTTAATT
TTAACGGCCTGATACCGATGAAGAGATATAACTAGCTTCGCCAAATCAAA
AATATATATCCCATCCATTTTTTATTTATCGCACAGGAATTCTTTAGTTT
TACGCTGTACACTCGAAAACAGCAGATCCGAAGTTATGTACGCACCATCT
ATCTATCCGGACTAATGTTGGGGTGAATTGGTGTAATCTAGGGCGATCGC
CTCGGGGTCCATATTTCTAGAGTATGACTATAGCGCTGATCTACAGGGGG
AATAAAGGCAGTTTTATTGAGAGTGCCTGTGTTCTGCCAGAAGTGCACGC
AAATGCGGACAATATTGTATGGTCAGTGCTGTATAGACAGTTTGTCAGTT
TATTTTTTTTCTACACACTTTACAGAATTTAGATATTCTGCATAGCCGAA
ACTAGCACGAAGAAGTGTTCACGTCCACGTAGATGTTGATTCGACCCCAT
TGCAGCTGATCCAAAATTAGTTGGTGGCCACTTGGGTCTCCGTGGGCAAT
CTCATGTAGTTTTCAGCGATTGTCCCATGGTGTAATGAAATGGAGAGGCC
TACAGCTGCCTCATCGTGGACTTGGATCCTCGCCTACAAGATGCCTGATA
TCTTTCACTTGTCCAGTTTCCTCCCCCAGTTTTCAATAACCCGGTCGGGG
TGTAATCTCTTTGTGCCTCTAGTGCACACCCCTAGCTTAGGGGGCTGTAG
GGACGTCTGGCGACGCGGCAACATGATGCCGAACAGGCAGATTCGTTTTT
GCCGGCTACCCTCTGGATGATGACCACAGTGATATTCCTTTGCCCCGTTT
CGCGAGGAGACCTTTGTTTTCGGTTGCTGTACCACAGGTGTAACTGCTTT
GTCACCGTTTGACTTATTGATTCAGTTCGTACGTGTGCTATTCATAGACA
GTGTACACTGCGTACACAAGTCCATACATGCGTTACAATACTTACACATC
ACATTCTATTTTGTAGTAAGTATGCCGAGAGCACTTTCCTGACGTTCCTG
GCATTCCTGAACCCCGGGCCTCTACGCGAGAACCTATGTAATTTTTTTTT
ACTTTCTTGGAACAGCTTTTCTAGCTGTGTCCGACCCCGGATAGCCAGTT
CATCTACAAGAGAACAAAATCCAGACTCGTGGTCTACACTACACCCGTCC
AAGATTTGGGTTCAATTCGCAGAGCCGGCGGTGTCCCTTTCAGAGCCAGT
CCCTCCTTGGAGCATTCTATTCAAGTACAATGAGCTAGATGATGCATTGT
TCTTGTATCGTGCCGTGTTGCATCGTATCCTCTTGTCGGCTTCGTATGTT
TACAGCTGCCCCGTCTAGCAGGCGCTCAGCCGCTTTCCTCACCTGCTACA
TCGCTGCAACACCTGGAGAAAATGGTGAGCCTGAAGTTCAGCTGGTACTG
TGCTGTGATTAACAATAGCATTTTGCGTCAAGATTATATGTGTATTAGGA
AAAAATAGGCGATGCTTGGGCTCGACCATCCGTGTCACTCCAGGTATAAG
AAGTACAAGGACGATTGAATGTGATATTACCGTGTCGTGACGCGTACGCC
CCCTAGTGCTGTTGAATGCAAATACTTGTGGTTTAGTACAGTAGGGTGGT
GATGGCGGTGATGATTTTTAAATAATAATATACAAAACGTTGTGCTACCA
TAAAAAACATTAAAAAAAAATAAACATATATATATATATATATATATATA
TATATATAATCAATTTTATATTGGGGTAATACAGTTTATTTTTAAGCCAA
TGAAATTACCAACTCTTGCTTCAGGTCAATAAGCTGTAACGTTTGTCTTT
AAAGAATGGCTGTTTCCAAATCTACCTTCTGACTGTCTTGAAACCTAGAT
GACTTTATACACGGAAACGAGTGTTACTTGGGTTATTTCTCTCCGTAGTA
AGGTGGTCCTGCCCGTCGTGGTCGTTGTTTCGGAACAGTTTTCCTATTCT
TTAATCAAGTAATTCCTGAAAAAATCTTCATTGAGAGTATAGGGGAGCCT
CCACGCGAGTGCAGTGAGTCCGTGCGGTCGAGGACACGCACAAAAATCTC
TGTATGGTTGGTATAGCCTAGCCGTGGTCACTAATATTGGTTATACGTTT
CTTGAGCCCTGACATCGTCATAAGCCTGCCGCAGCTGTCCCGTTGTTCTT
CCACGAGTTATTCTAGAGGTTGTGTATGTTCAGAAGCACTCCACGTCACA
ACAGCTAGTTGGTGATGATTTTGTAGAAGTAAATACGAAGGTGAGATGTA
TGGCCTTAACATGGGTACAACTGACTGTCGTTATATGAGCATTAAAGCTT
CATTCTACTACGTGTGGCGAGAGGATATACCCCCCCCCCCCACTAAAACT
AAGAGTATTTTTTGGAAAGCTTTCACCCCGCGAACGAACTCGAATAATTC
GATTGGTTCAGCAGCATAAACAAGCACGTTTATTTTCATGTGCGCCAAAC
CATCAGTCAATCTATGATTAGTCCGAATAATTGTAAAACAGACAGGGAGG
GGCTCAACACATTACACACTTTTTCATGCGCCATTCATTCCCTACGTTCT
GAAACTCGAGTGAATGATTTTTGATGTTCGTCGCGAATGCTCGAAATCTT
TGTATTTGTCATCCTCCGGGCGGTAAACGCTTTGTGTCTTCCCAGTACAT
CCCACCCCCAAAACGACTAGGACTATTTGCGGCTACAATACTTGAAAAAA
AAATCGAGGGTGTTGTCAGTATTGCACGGTACATTTTCGGAATTTGTGAA
GCCAGGCACGAAAGGAGTACCGCTGAGAAAAATATGGTTCTAGACGTATC
ATGAAGATATAGTTATGTGGGAATAATATATCGGTGTTACTTGTTCGGAG
TCCAAGTGCCAATCTTTTCTTTTTTTTTAACCCCCGGAAGGCTGAGGCAA
AAACCTCTATCCGATGCTTCCATACTTGGAGTATTTTCTACCGAAGTATT
TCTACATTTCCTTTAACAGAACAGAGTTTTTTATTCCTCTGAGGGGTAGG
CGCCACCCCGGTTTGGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCA
CTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGATCACGAGCTACC
CTACCCGTTCGGGCGTAGGTCCGTGAAGTGTGCCAATCATTTTATCCTTG
AGATGCTGTGCACGGTACTTTACGATGACAGCATGCTACTTTGTAGTGTA
GATCAAGGGCAGGTATGTGTCGTTGGGAAGATATTGAGGAGATATACGCT
GACTGTCGATTGACGGGCTCTTTTGACCATGTTATATTCCCGTACAGTCT
CCGTTCTCGAGATAATTGGTCTATCAATCGTGCTTGAAGAACGACTTGTA
TTTTACTGTGTTATAATCTGCTCCTTGATTTTATGAGTCGGATGCATCCT
TCAAGAGCTGTGTGGCGACGCAGGCCGCCAGCACGAACGATCTACGATGG
CTCTGTCCCTCTTTTGTTTGGTGCAATAGTACGGAGAAATGTGTTCGTTA
TTTCACAGCAGATGCCGTAAAATCCAATGGAGGTATCGATCTCACAGGGT
GGGTGCAAACGCTTTTCTAACCCGACTAATGATTTTTTCGGCGAGTACAA
CTCTAGCCCTGTTTCTAGCTACTCTATGGTACAGCTACTGACAGCGAATA
AGTAGGGTGCCGTTGGATGATCTTGTTGCGGGGTTAGATCAATCTGTTTG
TCTCGATTTATTGATCGGTACTCTCGACTGCGTCACTCATTGTCTCCGTT
TCTCGGAAATAGTCAGCCGCTTTTTGAAAAATGCTCGCACCGACTCCGGC
CTGATAGCCACCTCTGGCTTTACGGTATATCTGTATGAATCGAAAGGCTC
AATATCAGTCTCTTCGTGGCAGCTGCTGCTGCTGTATGGCGTTGTTTTTT
TGTAATAAATATATTTGATTTCGTCGCTTTGATCATTATGAACTCTGCGC
GAGCCAGGCTTTGGATGGAGTGCGCAGCACCGTCTCCCATGCGTTGCGAA
CGCTTGACGAGGCTACAGGGGACGGATTGATTTTGTCCCCTATCGTTGAG
GTGGGTTGATAGGCCTCTCTTCGTTTTTCCTGAATTTGATAACCTGGTTT
GACAGTGTGTTACTAATTGTTCATAATCGCCATGTTTACCATTCGCCAAT
AGTGCAGGTAATGATGTTGTTTCCATTGACGGATTTTGTGATCCCCCCCC
TCCTCTCCCCCCCCCCCGCGCCAATGTGTTCACAAAGCCGGTCACGTCGT
GTCTTGTAGCCTCTGTGCTTGATAGGTGGCCGGCCACGGGCTTGTTATTT
ATTTTAGAATTGCCGGTAATTTGGTGTGGACGGTTTTGTTTTGTTCCATT
CTGTGCGGTTAGGAAAGTATCCTTTTTATAAGGAATTCCCCAAAATTAGC
AGTATTCTGTCTCTGGGGTTCAGTCTAGGGTGGGTTTATGGTGATTATAT
TCCCATACAAATTGCCATCAATTACCAGCATTTTGTTACTCGTATTTGGA
TGGAGATTTTTGATGATATGTTCAAAAATTGGCATGAATTGCCAATCGCC
AACAGTTTTTTTTGTTCCTTGGCCGGTGGGTTGGTTCGCGATACGTATGT
ACGCAGGAAGCTATGGCCGACGTCCACGGTGTGTGGAAGCGGCTACTCGA
GGCGTGCCGGAGGTGGGGGTGGGTCGAGGCAGCTCCTCTTGGCCTAGCCC
CTGGAGGCCAAAAAGAATTCGGTAAGAAAAAAGAAACGGACCTTTCGCAT
GGATCCGCTGTTACGCATGCCTTCACACGTGACCCGAACCAGAATTCATT
TTCGAGAAAAACAGAACTAGAGCTAGTTTTTGCGTTAACCGGAACCGATT
TCACCGGTATCCAGAACCGGTTCGCGGTGAGGCTTCTGTCAGATTTTTCA
TTTATACAAACGGTTCGCAGTCGGTTTCATCTGATCTGCACTCGGTCGGT
TATCCAGAACGCCTTGAGAGAGGTGAAAGAAGACATGTCGTTTCTTACTA
TGGGAGTTACACTTTCGCTTTTCGAGCCTAGAATCGAGAGAAGATATTCG
GACAGCGCAAATAAAACAAGAAAATCTGGTGTCCCAGAAAATGGCCGATC
AGTCTATATATATGTATTAAAAAAAAAGAAAACAGTTTTTTTTCCAGAAA
ATTTAGGAAAGTTCTTTGCAAAGTCCATATACAACAAAGTACCTTATGAA
GTACATGTGTGATGTTTTTCACGCCTCTTTTTACAGAGATTCCGCATGAA
AGCTAAGAAAACATATTCCGGGAAGAAAAAATGATGAACAGCATACGCCG
CTTCTTTGATGGGTCGTTCGAAAGATGAGTCTTGACGAGATCTGTCATTA
GATCATTGTGCTTTTCTTAACGCACACGTAACTACTACCTCCCGCCCCCT
CCCCCGCCCCCGCCCCCGCGCGCGCGTGCGCTCTTGCGTTGGTGCCTCAT
CAGGCGCCCCCCTGATTATCCGAGCCGGGCGCATCGCGTGTCTCTTGCCC
AAGCCCCGCAATTCCTACTCCAACCTAGGTGGCGGCGGCGGGAGTGCTAT
GCGTGTAGCCACGTTGCAGAAACTCGCGGCGAGTGTGCCTCAAGTGGTGG
AGGCCGCCTGCAGCGAGACGTTTGCGTCTAATGACGGTCGTGGCGGGGAT
GCTGCGGCGGCTTTTCGGGGTTTCGAGTGCATTTCGGCATTTTCAAGGGA
GGGGAGCGCAGGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4274:3221..9336+ >mRNA_H-paniculata_contig4274.10937.1 ID=mRNA_H-paniculata_contig4274.10937.1|Name=mRNA_H-paniculata_contig4274.10937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig4274:3221..9336+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGGCCGCCGTCGCTCGCACGGTGGTGTCGTGCTTGGAGAGCTTCTACCT GAGGAGGATGTTTGCATTGGGACGCTTTGGGAGGCGGGCTCTGGCTTCGG CTATGGGCGAGGCGGAGGCCGCCGTCGCTCGCACGGTGGTGTCGTGCTTG GAGAGCTTCTACCTGAGGAGGATGTTTGCATTGGGACGCTTTGGGAGGCG GGCTCTGGCTTCGGCTATGGGCGAGGCGCTGCCCCGTCTAGCAGGCGCTC AGCCGCTTTCCTCACCTGCTACATCGCTGCAACACCTGGAGAAAATGCTG CCCCGTCTAGCAGGCGCTCAGCCGCTTTCCTCACCTGCTACATCGCTGCA ACACCTGGAGAAAATGGCTTTGGATGGAGTGCGCAGCACCGTCTCCCATG CGTTGCGAACGCTTGACGAGGCTACAGGGGACGGATTGATTTTGTCCCCT ATCGTTGAGGCTTTGGATGGAGTGCGCAGCACCGTCTCCCATGCGTTGCG AACGCTTGACGAGGCTACAGGGGACGGATTGATTTTGTCCCCTATCGTTG AGGAAGCTATGGCCGACGTCCACGGTGTGTGGAAGCGGCTACTCGAGGCG TGCCGGAGGTGGGGGTGGGTCGAGGCAGCTCCTCTTGGCCTAGCCCCTGG AGGCCAAAAAGAATTCGGAAGCTATGGCCGACGTCCACGGTGTGTGGAAG CGGCTACTCGAGGCGTGCCGGAGGTGGGGGTGGGTCGAGGCAGCTCCTCT TGGCCTAGCCCCTGGAGGCCAAAAAGAATTCGGCGCCCCCCTGATTATCC GAGCCGGGCGCATCGCGTGTCTCTTGCCCAAGCCCCGCAATTCCTACTCC AACCTAGGTGGCGGCGGCGGGAGTGCTATGCGTGTAGCCACGTTGCAGAA ACTCGCGGCGAGTGTGCCTCAAGTGGTGGAGGCCGCCTGCAGCGAGACGT TTGCGTCTAATGACGGTCGTGGCGGGGATGCTGCGGCGGCTTTTCGGGGT TTCGAGTGCATTTCGGCATTTTCAAGGGAGGGGAGCGCAGGGGGGGCGCC CCCCTGATTATCCGAGCCGGGCGCATCGCGTGTCTCTTGCCCAAGCCCCG CAATTCCTACTCCAACCTAGGTGGCGGCGGCGGGAGTGCTATGCGTGTAG CCACGTTGCAGAAACTCGCGGCGAGTGTGCCTCAAGTGGTGGAGGCCGCC TGCAGCGAGACGTTTGCGTCTAATGACGGTCGTGGCGGGGATGCTGCGGC GGCTTTTCGGGGTTTCGAGTGCATTTCGGCATTTTCAAGGGAGGGGAGCG CAGGGGGG back to top
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