mRNA_H-paniculata_contig4272.10932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4272.10932.1
Unique NamemRNA_H-paniculata_contig4272.10932.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.030e-43
Identity = 78/185 (42.16%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHDFDGKIGIWRVCVIKEAQRTIARRARS-----------------------EEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIVQQDGATPH 486
            I P LS   K++R+D + D++      +    + ++++E+WFYL R+K KVR+  GE   G  +V H+SH+ K+M I A +R DP HDFDGKIGIWR+CVI+ AQR+  +   S                       EEY+ D TIDAEWY++WY++  LPA   KM WL  +  +VQQDGA+PH
Sbjct:  121 IKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPH 305          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: W4H1M3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1M3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.680e-17
Identity = 56/168 (33.33%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHD----FDGKIGIWRVCVIKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIV--QQDGATPH 486
            ITP L+  +K +R+   ++ +   ++     L  ++++E WFY+T+++ K  +VPGE +   V  + K +I+KVMF+CAV+R   VH     +DGKIGIW +    +AQR    R         +T+  E YR + L+  LPA   K  W  G++  +  Q D A  H
Sbjct:  136 ITPFLTDANKYSRMKYAVEFVGPTQE-LNNLLQYVHLDEKWFYITKERRKFYLVPGEKEPKRV-CKSKRYITKVMFLCAVARPRYVHGAEMWWDGKIGIWPIVESVQAQRASVNRPAGTLETKSITVTKEVYRTFLLDKVLPAIVAK--WPRGDDRAIKLQHDNARAH 299          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: A0A485KCE6_9STRA (Aste57867_2111 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCE6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.220e-14
Identity = 55/168 (32.74%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVK-VGSVKVQHKSHISKVMFICAVSRSDPVHD----FDGKIGIWRVCVIKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGI-VQQDGATPH 486
            I P+L+  +K +R+   L  ++ + +     L  ++++E WFYLT+++ +  +VPGE K V S K  +K +I+KVMF+ AV+R   + D    +DGKIG W    I  A R+   R         V++  + YR++ +E  LPA  +K  W   ++ + +QQD A  H
Sbjct:  134 IRPVLTDSNKYSRLKFALSMVTSNMQ-LDDMLDCVHLDEKWFYLTQERRRFYLVPGECKPVRSCK--NKRYITKVMFLSAVARPRYIDDTDTWWDGKIGTWPFVEIVPAARSSVNRPAGTPEMKSVSVIRDVYRSFLIEKVLPAILDK--WPNAKKIVKLQQDNAPAH 296          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.950e-14
Identity = 53/168 (31.55%), Postives = 82/168 (48.81%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHD----FDGKIGIWRVCVIKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEG--IVQQDGATPH 486
            + PLL+  +K  R+      +  D   F   +  ++++E WFY+TR K  + ++PGE        Q K  I+KVMF+ AV+R    ++    FDGKIG W    +  AQR    R       V V +  + YR+  + + +PA  NK  W +      ++QQD A PH
Sbjct:  131 LKPLLTDANKAARLKWAQKFVGPDL-VFDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRT-TQSKRFITKVMFLSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNK--WPDARTSCIVIQQDNARPH 294          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: W4GP40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP40_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.770e-12
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHD----FDGKIGIWRVCVIKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIVQQDGATPH 486
            I P L+  +K  R+    +++  D       +  ++V+E WFY+TR K  + ++PGE +      + K  I+KVMF+ AV+R    ++    FDG+IG W       AQR+   R       V  T+  + YR+  +++ +PA   K    +    ++QQD A PH
Sbjct:   56 IKPQLTEANKAARLKWAFERLGPDLMVHDM-MDYVHVDEKWFYMTRVKKTLYLLPGE-EPPHRSTKSKRFITKVMFLSAVARPRWNYNTNEWFDGRIGTWHFTQTVPAQRSSRNRPSGTMVTVPCTVTRDTYRDMLIDNVIPAIKAKWPNDKAARILLQQDNARPH 219          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.230e-11
Identity = 48/168 (28.57%), Postives = 77/168 (45.83%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRK--TFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSR----SDPVHDFDGKIGIWRVCVIKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIVQQDGATPH 486
            + P LS D    RV  +   I+   +  TF      ++++E WF++ + K +V + P E     +  +HKSHI K+MF+CAV+R    S     FDG++G+W       A+R    R            + E Y+   ++  LPA         G   ++Q+D AT H
Sbjct:  173 LKPTLSEDQNAERVRFISSFITLIPRGATFSPMYDRVHLDEKWFFMKKTKRRVYLTPTE-PTPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGMWPFANYAPAERASRNREAGTLVLKSFPANKETYKRMLIDSVLPAIKLNWPSWSGRRIVLQRDNATSH 339          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: UPI001C2659A6 (uncharacterized protein LOC121754350 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2659A6)

HSP 1 Score: 71.6 bits (174), Expect = 1.360e-11
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKT----FKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHD------FDGKIGIWRVCVIKEAQRTIARR-ARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIV--QQDGATPH 486
            I P L+ DH   R+   L  +  DR      F+   ++I+++E WFY+T+   +  + PGE +      ++K  ISK+MF+CAVSR  P+        FDGKIGI+       AQRT   R A + E     +I  E  +   +   +PA   K  W EG    +  QQD A PH
Sbjct:  126 IKPNLTADHMLLRLRFTLQSLELDRILNRIMFRNMDNTIHIDEKWFYITQGSQRFYLAPGEAEPHRT-CKNKKFISKIMFMCAVSR--PLFGQNGEVLFDGKIGIFPFTKQVAAQRTSKNRVAGTMETKPIESITKEVTKQCLINKIIPAIFEK--WPEGASKRIRIQQDNAKPH 295          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: UPI001C2541F4 (uncharacterized protein LOC121800620 n=4 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2541F4)

HSP 1 Score: 71.6 bits (174), Expect = 1.370e-11
Identity = 53/171 (30.99%), Postives = 86/171 (50.29%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQ----ISHDRKTFKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRS----DPVHDFDGKIGIWRVCVIKEAQRTIARRARSE-EYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIVQQDGATPH 486
            I P L+  +K  R+   L +    I+  R  F++  + ++++E WFY+T+   +  ++P EV+      + K  I+KVMF+CAVSR     D    FDGK+GI+    +  AQR    RA+   E     +++    R+  +   +PA   K      +E  +QQD ATPH
Sbjct:  131 IKPALTDANKLARLKWCLSKLEPHINAGRVQFESMHNVVHIDEKWFYMTKTSDRYYLLPDEVEPYRA-CKSKRFITKVMFMCAVSRPVFGLDGQTKFDGKLGIFPFTELVAAQRKSKNRAKGTLETKPISSVNKSVMRDCIINKIVPAIKAKWPEWASKEIYIQQDNATPH 300          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: UPI002009A94E (uncharacterized protein LOC125206766 n=2 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A94E)

HSP 1 Score: 70.5 bits (171), Expect = 3.360e-11
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDR--KT--FKTGLHSINVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHD------FDGKIGIWRVCVIKEAQRTIA-RRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEG--EEGIVQQDGATPH 486
            I P L+  +K  R+   L+ +  DR  KT  FK   ++I+++E WFY+T+   +  + PGE +      Q+K  ISK+MF+CAV+R  P+        FDGKIGI+       A+R+   RRA + E     +I  E  ++  +   +PA  +K  W EG  ++  +QQD A PH
Sbjct:   95 IRPDLTGPNKLLRMRFTLEALELDRILKTIKFKDMHNTIHIDEKWFYITKGMHRFYLAPGEDEPHR-SCQNKKFISKIMFMCAVTR--PLFGRNGEVLFDGKIGIFPFIERVPAKRSSKNRRAGTIETKPIESIAKEVTKDCIINKIIPAIMSK--WPEGASKQIFIQQDNAKPH 264          
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 70.5 bits (171), Expect = 3.470e-11
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    1 ITPLLSFDHKKNRVDLMLDQISHDRKTFKT---GLHSI-NVNEAWFYLTRDKGKVRMVPGEVKVGSVKVQHKSHISKVMFICAVSR----SDPVHDFDGKIGIWRVCVIKEAQRTIARRARSE-EYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGEEGIVQQDGATPH 486
            I P L+  +K  R+   L Q+       K    G+H+I +++E WFY+T+   +  ++P E +      + K +I+KVMF+CAVSR    S+    +DGK+GI+       AQR    R R   E     T++ E  R   +   +PA   K      +E  +QQD ATPH
Sbjct:  132 IKPALTELNKLARLKWCLTQLQPSITQGKVHFHGMHNIVHIDEKWFYMTKTSDRYYLLPDEDEPYR-SCKSKRYITKVMFMCAVSRPQFDSEGQPTYDGKVGIFPFTEAVPAQRKSKNRDRGTLETKPITTLNKEVMRGCIIHKIIPAIKAKWPDWASKEIYIQQDNATPH 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4272.10932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.030e-4342.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4H1M3_9STRA2.680e-1733.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KCE6_9STRA3.220e-1432.74Aste57867_2111 protein n=1 Tax=Aphanomyces stellat... [more]
A0A485KBU5_9STRA3.950e-1431.55Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
W4GP40_9STRA7.770e-1229.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
F0WV30_9STRA1.230e-1128.57Transposase putative n=1 Tax=Albugo laibachii Nc14... [more]
UPI001C2659A61.360e-1133.71uncharacterized protein LOC121754350 n=3 Tax=Salvi... [more]
UPI001C2541F41.370e-1130.99uncharacterized protein LOC121800620 n=4 Tax=Salvi... [more]
UPI002009A94E3.360e-1134.29uncharacterized protein LOC125206766 n=2 Tax=Salvi... [more]
UPI0020091A083.470e-1132.16uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4272contigH-paniculata_contig4272:2705..3190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue4e-12
Seed eggNOG ortholog157072.XP_008870376.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D1IG@1,2SI8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.2875054-CDS-H-paniculata_contig4272:2704..31901622930299.2875054-CDS-H-paniculata_contig4272:2704..3190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4272 2705..3190 +
1691481231.2794125-CDS-H-paniculata_contig4272:2704..31901691481231.2794125-CDS-H-paniculata_contig4272:2704..3190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4272 2705..3190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4272.10932.1prot_H-paniculata_contig4272.10932.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4272 2705..3190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4272.10932.1

>prot_H-paniculata_contig4272.10932.1 ID=prot_H-paniculata_contig4272.10932.1|Name=mRNA_H-paniculata_contig4272.10932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
ITPLLSFDHKKNRVDLMLDQISHDRKTFKTGLHSINVNEAWFYLTRDKGK
VRMVPGEVKVGSVKVQHKSHISKVMFICAVSRSDPVHDFDGKIGIWRVCV
IKEAQRTIARRARSEEYDVDVTIDAEWYRNWYLEDFLPAANNKMWWLEGE
EGIVQQDGATPH
back to top

mRNA from alignment at H-paniculata_contig4272:2705..3190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4272.10932.1 ID=mRNA_H-paniculata_contig4272.10932.1|Name=mRNA_H-paniculata_contig4272.10932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig4272:2705..3190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACCCCCTTGCTTTCTTTCGACCACAAAAAGAACCGCGTGGACTTAAT GCTCGACCAGATTTCCCACGATCGCAAAACGTTCAAAACAGGCCTCCACT CGATTAACGTCAACGAGGCGTGGTTCTACCTCACCCGTGACAAGGGAAAG GTGCGCATGGTCCCAGGGGAAGTAAAAGTGGGCTCGGTCAAGGTGCAGCA CAAGAGTCACATTTCCAAAGTGATGTTCATCTGCGCCGTTTCACGTTCCG ATCCTGTACACGACTTCGACGGAAAGATTGGAATCTGGCGTGTGTGCGTC ATCAAGGAGGCACAAAGGACTATCGCGCGGCGCGCGAGGAGCGAGGAATA CGACGTCGACGTCACCATCGACGCCGAATGGTACCGGAATTGGTACCTCG AAGATTTCTTGCCAGCCGCAAACAACAAGATGTGGTGGCTGGAGGGCGAA GAGGGCATTGTGCAGCAGGACGGAGCGACACCGCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4272:2705..3190+

>mRNA_H-paniculata_contig4272.10932.1 ID=mRNA_H-paniculata_contig4272.10932.1|Name=mRNA_H-paniculata_contig4272.10932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig4272:2705..3190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACCCCCTTGCTTTCTTTCGACCACAAAAAGAACCGCGTGGACTTAAT
GCTCGACCAGATTTCCCACGATCGCAAAACGTTCAAAACAGGCCTCCACT
CGATTAACGTCAACGAGGCGTGGTTCTACCTCACCCGTGACAAGGGAAAG
GTGCGCATGGTCCCAGGGGAAGTAAAAGTGGGCTCGGTCAAGGTGCAGCA
CAAGAGTCACATTTCCAAAGTGATGTTCATCTGCGCCGTTTCACGTTCCG
ATCCTGTACACGACTTCGACGGAAAGATTGGAATCTGGCGTGTGTGCGTC
ATCAAGGAGGCACAAAGGACTATCGCGCGGCGCGCGAGGAGCGAGGAATA
CGACGTCGACGTCACCATCGACGCCGAATGGTACCGGAATTGGTACCTCG
AAGATTTCTTGCCAGCCGCAAACAACAAGATGTGGTGGCTGGAGGGCGAA
GAGGGCATTGTGCAGCAGGACGGAGCGACACCGCACATCACCCCCTTGCT
TTCTTTCGACCACAAAAAGAACCGCGTGGACTTAATGCTCGACCAGATTT
CCCACGATCGCAAAACGTTCAAAACAGGCCTCCACTCGATTAACGTCAAC
GAGGCGTGGTTCTACCTCACCCGTGACAAGGGAAAGGTGCGCATGGTCCC
AGGGGAAGTAAAAGTGGGCTCGGTCAAGGTGCAGCACAAGAGTCACATTT
CCAAAGTGATGTTCATCTGCGCCGTTTCACGTTCCGATCCTGTACACGAC
TTCGACGGAAAGATTGGAATCTGGCGTGTGTGCGTCATCAAGGAGGCACA
AAGGACTATCGCGCGGCGCGCGAGGAGCGAGGAATACGACGTCGACGTCA
CCATCGACGCCGAATGGTACCGGAATTGGTACCTCGAAGATTTCTTGCCA
GCCGCAAACAACAAGATGTGGTGGCTGGAGGGCGAAGAGGGCATTGTGCA
GCAGGACGGAGCGACACCGCAC
back to top