mRNA_H-paniculata_contig42714.10928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42714.10928.1
Unique NamemRNA_H-paniculata_contig42714.10928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.400e-48
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 AARCDAVIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSGTTFFAGD-LTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIRAHSSAVS 321
            AA+ DAVID MFDIQAAIRPSIYET+ +RKL++RKELS VTLPLWL +LERWLER+GTTFF G+ +TICDLVIYTRMKWLR GV L+GIP  IL  F R+RAHS AV+
Sbjct:   85 AAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGV-LVGIPDTILRNFRRVRAHSEAVA 191
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: A0A3C1L1F1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3C1L1F1_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-21
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 AARCDAVIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSGTT-FFAGD-LTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIRAHSSAV 318
            AAR DAVID   DI   IRPSI E DP +KLA+R ++   +LP WLGHL+RWLE  G   F  G+ LTI DL ++  + WLR GV L GIP +I +    + AH   +
Sbjct:   90 AARVDAVIDAATDITWLIRPSIREPDPAKKLAMRAQIVETSLPTWLGHLQRWLECHGDQGFVVGESLTIGDLALWRLVGWLRSGV-LDGIPENIGEHLPLLMAHQHKI 196
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: A0A7S1XAS3_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XAS3_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 7.900e-14
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 AARCDAVIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSGTTFFAG-DLTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIR 300
            A R D  +    D+Q AIRP+++E D ++K+A+RK L++ T P WL   +  LE +G+ F  G  +T+ DL ++  +  L+ G IL GIP  I +P+ +++
Sbjct:   84 AMRVDMWLGAADDVQGAIRPTLFEKDDEKKMAMRKVLADETFPKWLSIFDSQLESNGSGFLVGTSMTVADLKLFCILDNLKSG-ILDGIPPTITEPYAKLQ 183
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: A0A0G4J4B5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J4B5_PLABS)

HSP 1 Score: 67.4 bits (163), Expect = 1.870e-11
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    7 RCDAVIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSGTTFFA--GDLTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRI 297
            + D +I+   DI  A+ PS+ E D ++K+A+RKEL++ TLP  L  ++R L ++ T  +     +TI D+ ++   +W R G+I  GIP D++D +  I
Sbjct:   89 KVDQIIEANTDIVTALMPSLREPDAQKKMAMRKELADTTLPPLLKGIDRALGQNATPGYTCGSTITIADISLWGLTQWFRSGMID-GIPKDLIDGYPAI 186
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: A0A1V9YVC1_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVC1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.360e-10
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    7 RCDAVIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERS-GTTFFAGD-LTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIRAHSSAVS 321
            R D ++    DI   + PS++E D  +K+A+R+EL+ VTLP     LE  L  + G  +F GD LT+ D+ +Y   K L  G  L GIP  I+D + R  A + AV+
Sbjct:   90 RVDEILAFSDDIVNKLIPSLFEQDVTKKMAMRRELAEVTLPGLFPLLEARLRATPGGKYFVGDTLTLADIELYCMRKNLTSGH-LDGIPTTIIDAYPRWNAIADAVA 195
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BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Match: A0A5D6XNZ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNZ9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.530e-7
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   19 VIDVMFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSG--TTFFAGDLTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIRAHSSAVS 321
            +I  + ++   + PS+ E+DP++K A+R EL+  T+P +L  LE  L   G        D+ + DL IYT +K LR G I   IP  I D +  + A    VS
Sbjct:    1 IISALEEVLQKMSPSMRESDPEKKKAMRLELAETTIPRYLSLLEARLATFGKYAALQTKDVLLHDLAIYTYLKSLRAGYID-HIPVTIADSYALLNASFDKVS 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42714.10928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FPV3_ECTSI3.400e-4875.00Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A3C1L1F1_9DELT1.220e-2149.07Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7S1XAS3_9CHLO7.900e-1436.63Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A0G4J4B5_PLABS1.870e-1135.35Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A1V9YVC1_9STRA7.360e-1038.32Glutathione S-transferase n=1 Tax=Achlya hypogyna ... [more]
A0A5D6XNZ9_9STRA2.530e-734.95Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42714contigH-paniculata_contig42714:411..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog112098.XP_008612943.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG1695@1,KOG1695@2759
Ec32 ortholog descriptionGlutathione S-transferase
Ec32 orthologEc-18_001805.1
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons3
Model size321
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42714.10928.1prot_H-paniculata_contig42714.10928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42714 441..1355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930298.9439037-UTR-H-paniculata_contig42714:410..4401622930298.9439037-UTR-H-paniculata_contig42714:410..440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42714 411..440 +
1691481231.1571815-UTR-H-paniculata_contig42714:410..4401691481231.1571815-UTR-H-paniculata_contig42714:410..440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42714 411..440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930298.9645417-CDS-H-paniculata_contig42714:440..5001622930298.9645417-CDS-H-paniculata_contig42714:440..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 441..500 +
1691481231.1724765-CDS-H-paniculata_contig42714:440..5001691481231.1724765-CDS-H-paniculata_contig42714:440..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 441..500 +
1622930298.981388-CDS-H-paniculata_contig42714:902..10621622930298.981388-CDS-H-paniculata_contig42714:902..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 903..1062 +
1691481231.1837122-CDS-H-paniculata_contig42714:902..10621691481231.1837122-CDS-H-paniculata_contig42714:902..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 903..1062 +
1622930299.002277-CDS-H-paniculata_contig42714:1284..13551622930299.002277-CDS-H-paniculata_contig42714:1284..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 1285..1355 +
1691481231.193288-CDS-H-paniculata_contig42714:1284..13551691481231.193288-CDS-H-paniculata_contig42714:1284..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42714 1285..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42714.10928.1

>prot_H-paniculata_contig42714.10928.1 ID=prot_H-paniculata_contig42714.10928.1|Name=mRNA_H-paniculata_contig42714.10928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MFDIQAAIRPSIYETDPKRKLALRKELSNVTLPLWLGHLERWLERSGTTF
FAGDLTICDLVIYTRMKWLRHGVILLGIPGDILDPFTRIRAHSSAVS
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mRNA from alignment at H-paniculata_contig42714:411..1355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42714.10928.1 ID=mRNA_H-paniculata_contig42714.10928.1|Name=mRNA_H-paniculata_contig42714.10928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig42714:411..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCACGTTGTGATGCGGTGATCGATGTCATGTTCGACATTCAGGCCGC
GATCAGGCCTTCCATCTACGAGACAGATCCGAAGCGTAAGGTAGGCGAAC
AGTTTTGTGGTCATTCGTATCTGCGGCAGCGAGATTATTTCTCGCCTTTC
TGACGAAGGTAAGGAGAAAGCGCACGTACGTGCATTCAATAGAAGATTCC
TCGAAACCATTTTCCGCTCGTTTTTTTGCTCTACTTTTTTTAGCTCGTTT
TTCTGGAACTGTACGCTAACGCCGGTATATTGGATTGTTCTGCTCTGCTC
TATTCTGCTCTCTTCTGTTGGGAAGGATTGCATAAGGAAGACATTCGTTC
TTTTTAAACAAAACTGGTGGCACAAAGGATAGTAGTGAAGACAAATGCCC
ACACTTGCTTTTTTTGTTAGTTCCTGACGCACACTGTACTCTACACACTG
GACTTGTGTGTAGCTTACATACCTGCCTGCTCAAATTCTCAGCTGGCACT
GAGGAAAGAGCTATCAAACGTGACCCTGCCGCTGTGGCTGGGCCATCTAG
AACGTTGGTTGGAGCGATCTGGAACGACGTTCTTCGCCGGAGATCTCACG
ATTTGCGACCTCGTCATTTACACCAGGATGAAGTGGTTACGGCATGGGGT
GAGTCCCCAATAGCTTCTTGTATCCACCATGCCAATACGCGCGTTTGAAT
CTATTCGTTTCCATGTACTCCATACGGCGTGCTGTAGATTTCTTTCGAGT
TGGTTGCCCCAGCGGGCTATAGACTCCTTTCGGATGCTGCTGTCATTTCA
GACTTTTGACTATTTACGTACTTTATCTCTCTATGTACATGTCTCTCCAT
CGATCGACCGTTTGTCGCAGAAAGTTCTGTTGGGAATTCCTGGCGATATA
CTGGATCCATTTACTCGGATTCGCGCCCACAGCTCTGCGGTGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig42714:411..1355+

>mRNA_H-paniculata_contig42714.10928.1 ID=mRNA_H-paniculata_contig42714.10928.1|Name=mRNA_H-paniculata_contig42714.10928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig42714:411..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACATTCAGGCCGCGATCAGGCCTTCCATCTACGAGACAGATCC
GAAGCGTAAGATGTTCGACATTCAGGCCGCGATCAGGCCTTCCATCTACG
AGACAGATCCGAAGCGTAAGCTGGCACTGAGGAAAGAGCTATCAAACGTG
ACCCTGCCGCTGTGGCTGGGCCATCTAGAACGTTGGTTGGAGCGATCTGG
AACGACGTTCTTCGCCGGAGATCTCACGATTTGCGACCTCGTCATTTACA
CCAGGATGAAGTGGTTACGGCATGGGGTGACTGGCACTGAGGAAAGAGCT
ATCAAACGTGACCCTGCCGCTGTGGCTGGGCCATCTAGAACGTTGGTTGG
AGCGATCTGGAACGACGTTCTTCGCCGGAGATCTCACGATTTGCGACCTC
GTCATTTACACCAGGATGAAGTGGTTACGGCATGGGGTGATTCTGTTGGG
AATTCCTGGCGATATACTGGATCCATTTACTCGGATTCGCGCCCACAGCT
CTGCGGTGAGTTTCTGTTGGGAATTCCTGGCGATATACTGGATCCATTTA
CTCGGATTCGCGCCCACAGCTCTGCGGTGAGT
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