prot_H-paniculata_contig4271.10927.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4271.10927.1
Unique Nameprot_H-paniculata_contig4271.10927.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length419
Homology
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 3.110e-63
Identity = 112/165 (67.88%), Postives = 126/165 (76.36%), Query Frame = 0
Query:  160 QSEYPGWRAAAIAIQENGPLSVG----------KGLSRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGTWLLVC 314
            Q E  GWRAAA AI   G    G           G SR+ +AVVCSSNVNRSIMA+ LL++HD   +SYGTGREV+LPGKDS+SPQSF FGTPYVEIRD LA Q+E LFRRNSVLGLLER+A TK+APERWQ+L G+ VASFDVVVCFESRVFDLVVEG    +C
Sbjct:  104 QQELEGWRAAANAILSAGVKEDGAGSRSSKGESSGSSRKSFAVVCSSNVNRSIMAEILLKEHDIRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEGILTFLC 268          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.830e-47
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0
Query:  203 MAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 307
            MA+ LL++HD   +S+GTGREV+LPGKDS+SPQSF FGTPYVEIRD LA Q+E LFRRNSVLGLLER+A TK+APERWQ+L G  VASFDVVVCFESRVFDLVVE
Sbjct:    1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVE 105          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.660e-42
Identity = 74/124 (59.68%), Postives = 102/124 (82.26%), Query Frame = 0
Query:  186 SRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGT 309
            S+R++AVVCS+N NRS+MA +LL++H+F V+SYGTGREV+LPGKD  SP+ F FGTPY +I D L ++DE LF +N++L L+ R+A  K AP+R+Q ++G ++A FDVV+CFE+RVF LVVEGT
Sbjct:  102 SKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGT 225          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.700e-39
Identity = 73/134 (54.48%), Postives = 103/134 (76.87%), Query Frame = 0
Query:  174 QENGPLSVGKGLSRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 307
            Q     ++    S+R++AVVCS+N NRS+MA +LL++H+F V+SYGTGREV+LPGKD  SP+ F FGTPY +I D L ++DE LF +N++L L+ R+A  K AP+R+Q ++G ++A FDVV+CFE+RVF LVVE
Sbjct:  186 QPGATKTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVE 319          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.480e-35
Identity = 63/116 (54.31%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  192 VVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 307
            +VCSSNVNRS++ Q +LEK + +V S+G G +VKLPG+    P  F FGTPY+E+ DIL + D++L+ RN VL LL RDA TK+ PERWQ L    V ++DVV+CFE+R+FD+ V+
Sbjct:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQ 116          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A0A0LQ65_CUCSA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=3 Tax=fabids TaxID=91835 RepID=A0A0A0LQ65_CUCSA)

HSP 1 Score: 129 bits (323), Expect = 1.200e-32
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0
Query:  189 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 308
            +YA+VCSSN NRS+ A  +L+   F+V SYGTG  VKLPG   R P  + FGTPY  + D L  +D EL++RN +L +L+R+AA K AP+RWQ    D   SFDVV  FE +VFD+V+EG
Sbjct:    4 RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAAD--GSFDVVFTFEEKVFDMVIEG 121          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A2N9EIU2_FAGSY (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIU2_FAGSY)

HSP 1 Score: 129 bits (324), Expect = 1.350e-32
Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 0
Query:  189 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGTWLLVCCG 316
            +YA+VCSSN NRS+ A  LL++  F V SYGT   VKLPG   R P  + FGTPY ++ D L  +D EL++RN +L +L+R++A K AP+RWQ    D   SFDVV  FE +VFD+VVEG W ++  G
Sbjct:    4 RYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTRAHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAAD--GSFDVVFTFEEKVFDMVVEG-WYIILYG 128          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A2G9GY03_9LAMI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GY03_9LAMI)

HSP 1 Score: 130 bits (326), Expect = 1.680e-32
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0
Query:  189 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 308
            +YA+VCSSN NRS+ A  LL++  F V SYGTG+ VKLPG   R P  + FGTPY  + D L  +D EL+RRN +L +L+R+ A K AP+RWQ    D   +FDVV+ FE +VFD+V+EG
Sbjct:    4 RYAMVCSSNQNRSMEAHALLKREGFDVASYGTGQHVKLPGPSLREPNVYDFGTPYKHMLDDLRRKDPELYRRNGILPMLKRNLAVKNAPQRWQENAAD--GTFDVVLTFEEKVFDMVLEG 121          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: UPI0010A4EFFF (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4EFFF)

HSP 1 Score: 128 bits (321), Expect = 2.420e-32
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 0
Query:  189 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGT 309
            +YAVVCSSN NRS+ A  LL++  F V SYGTG  VKLPG+  R P  + FGTPY ++ D L  +D+EL++RN +L +L+R++  K AP+RWQ    +   SFD+V  FE +VFD+V EG+
Sbjct:    4 RYAVVCSSNQNRSMEAHSLLKRQGFDVCSYGTGAHVKLPGRSLREPNVYDFGTPYKQMLDDLRRKDQELYKRNGILPMLKRNSTVKLAPQRWQDNAAE--GSFDIVFTFEEKVFDMVAEGS 122          
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A836ASG4_9ROSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836ASG4_9ROSI)

HSP 1 Score: 128 bits (322), Expect = 3.760e-32
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 0
Query:  189 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 308
            +YA+VCSSN NRS+ A  LL++H F V SYGTG  VKLPG   R P  + FGTPY ++ D L  +D EL++RN +L +L+R++  K AP+RWQ    D   SF VV+ FE +VFD+V+EG
Sbjct:    4 RYAMVCSSNQNRSMEAHSLLKRHGFDVSSYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSGVKLAPQRWQDNAAD--GSFTVVLTFEEKVFDMVLEG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB5_ECTSI3.110e-6367.88Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A6H5JLZ3_9PHAE1.830e-4778.10RNA polymerase II subunit A C-terminal domain phos... [more]
D8LSD4_ECTSI1.660e-4259.68RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE3.700e-3954.48Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A835Z2K1_9STRA1.480e-3554.31RNA polymerase II subunit A C-terminal domain phos... [more]
A0A0A0LQ65_CUCSA1.200e-3252.50RNA polymerase II subunit A C-terminal domain phos... [more]
A0A2N9EIU2_FAGSY1.350e-3250.78RNA polymerase II subunit A C-terminal domain phos... [more]
A0A2G9GY03_9LAMI1.680e-3252.50RNA polymerase II subunit A C-terminal domain phos... [more]
UPI0010A4EFFF2.420e-3250.41RNA polymerase II subunit A C-terminal domain phos... [more]
A0A836ASG4_9ROSI3.760e-3251.67RNA polymerase II subunit A C-terminal domain phos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 184..239
e-value: 5.2E-10
score: 41.2
coord: 249..314
e-value: 4.9E-6
score: 28.3
NoneNo IPR availablePANTHERPTHR20383:SF9RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72coord: 187..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 387..418
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 328..365
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 308..327
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 366..386
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..307
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..22
NoneNo IPR availableTMHMMTMhelixcoord: 364..386
NoneNo IPR availableTMHMMTMhelixcoord: 305..327
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 189..307
e-value: 1.1E-39
score: 136.0
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 187..307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4271contigH-paniculata_contig4271:1700..9370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4271.10927.1mRNA_H-paniculata_contig4271.10927.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4271 2..9457 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4271.10927.1 ID=prot_H-paniculata_contig4271.10927.1|Name=mRNA_H-paniculata_contig4271.10927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp
MKRARETTGGSVSVVVPPVARAVQNNSKLPFRRNTTTSSTSSTSSSSSSF
STSSSCSSYDGTKAATPAVMSKNNQQQEQQQQQYQHQHQLQLKTKNRVGA
LAQAPAVVRPLPSLPPILTFADDTTKGSKLSEHTSRLETPAGPEMKKIRT
TPPPPPVQQQSEYPGWRAAAIAIQENGPLSVGKGLSRRKYAVVCSSNVNR
SIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDIL
ASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESR
VFDLVVEGTWLLVCCGYYQLIVVRAVWDRGSTDMRRIWSVRRLGEYGISG
RFCNSEKNLHRDDVSVSYSMGCPYLVPLIIFFGFWYHGCGFYTSAASTVN
MLPRNRLEAVLCFYKAAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA