|
|
Homology
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI) HSP 1 Score: 218 bits (555), Expect = 5.940e-59 Identity = 112/165 (67.88%), Postives = 126/165 (76.36%), Query Frame = 1
Query: 565 QSEYPGWRAAAIAIQENGPLSVG----------KGLSRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGTWLLVC 1029
Q E GWRAAA AI G G G SR+ +AVVCSSNVNRSIMA+ LL++HD +SYGTGREV+LPGKDS+SPQSF FGTPYVEIRD LA Q+E LFRRNSVLGLLER+A TK+APERWQ+L G+ VASFDVVVCFESRVFDLVVEG +C
Sbjct: 104 QQELEGWRAAANAILSAGVKEDGAGSRSSKGESSGSSRKSFAVVCSSNVNRSIMAEILLKEHDIRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEGILTFLC 268
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE) HSP 1 Score: 169 bits (429), Expect = 8.860e-45 Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 1
Query: 694 MAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 1008
MA+ LL++HD +S+GTGREV+LPGKDS+SPQSF FGTPYVEIRD LA Q+E LFRRNSVLGLLER+A TK+APERWQ+L G VASFDVVVCFESRVFDLVVE
Sbjct: 1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVE 105
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI) HSP 1 Score: 158 bits (400), Expect = 3.430e-40 Identity = 74/124 (59.68%), Postives = 102/124 (82.26%), Query Frame = 1
Query: 643 SRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGT 1014
S+R++AVVCS+N NRS+MA +LL++H+F V+SYGTGREV+LPGKD SP+ F FGTPY +I D L ++DE LF +N++L L+ R+A K AP+R+Q ++G ++A FDVV+CFE+RVF LVVEGT
Sbjct: 102 SKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGT 225
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE) HSP 1 Score: 154 bits (389), Expect = 6.120e-37 Identity = 73/134 (54.48%), Postives = 103/134 (76.87%), Query Frame = 1
Query: 607 QENGPLSVGKGLSRRKYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 1008
Q ++ S+R++AVVCS+N NRS+MA +LL++H+F V+SYGTGREV+LPGKD SP+ F FGTPY +I D L ++DE LF +N++L L+ R+A K AP+R+Q ++G ++A FDVV+CFE+RVF LVVE
Sbjct: 186 QPGATKTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVE 319
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA) HSP 1 Score: 139 bits (349), Expect = 7.160e-34 Identity = 63/116 (54.31%), Postives = 86/116 (74.14%), Query Frame = 1
Query: 661 VVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVE 1008
+VCSSNVNRS++ Q +LEK + +V S+G G +VKLPG+ P F FGTPY+E+ DIL + D++L+ RN VL LL RDA TK+ PERWQ L V ++DVV+CFE+R+FD+ V+
Sbjct: 1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQ 116
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A0A0LQ65_CUCSA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=3 Tax=fabids TaxID=91835 RepID=A0A0A0LQ65_CUCSA) HSP 1 Score: 129 bits (323), Expect = 2.880e-31 Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query: 652 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 1011
+YA+VCSSN NRS+ A +L+ F+V SYGTG VKLPG R P + FGTPY + D L +D EL++RN +L +L+R+AA K AP+RWQ D SFDVV FE +VFD+V+EG
Sbjct: 4 RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAAD--GSFDVVFTFEEKVFDMVIEG 121
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A2N9EIU2_FAGSY (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIU2_FAGSY) HSP 1 Score: 129 bits (324), Expect = 3.340e-31 Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 1
Query: 652 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGTWLLVCCG 1035
+YA+VCSSN NRS+ A LL++ F V SYGT VKLPG R P + FGTPY ++ D L +D EL++RN +L +L+R++A K AP+RWQ D SFDVV FE +VFD+VVEG W ++ G
Sbjct: 4 RYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTRAHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAAD--GSFDVVFTFEEKVFDMVVEG-WYIILYG 128
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A2G9GY03_9LAMI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GY03_9LAMI) HSP 1 Score: 130 bits (326), Expect = 4.450e-31 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query: 652 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 1011
+YA+VCSSN NRS+ A LL++ F V SYGTG+ VKLPG R P + FGTPY + D L +D EL+RRN +L +L+R+ A K AP+RWQ D +FDVV+ FE +VFD+V+EG
Sbjct: 4 RYAMVCSSNQNRSMEAHALLKREGFDVASYGTGQHVKLPGPSLREPNVYDFGTPYKHMLDDLRRKDPELYRRNGILPMLKRNLAVKNAPQRWQENAAD--GTFDVVLTFEEKVFDMVLEG 121
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: UPI0010A4EFFF (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4EFFF) HSP 1 Score: 128 bits (321), Expect = 5.520e-31 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 652 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEGT 1014
+YAVVCSSN NRS+ A LL++ F V SYGTG VKLPG+ R P + FGTPY ++ D L +D+EL++RN +L +L+R++ K AP+RWQ + SFD+V FE +VFD+V EG+
Sbjct: 4 RYAVVCSSNQNRSMEAHSLLKRQGFDVCSYGTGAHVKLPGRSLREPNVYDFGTPYKQMLDDLRRKDQELYKRNGILPMLKRNSTVKLAPQRWQDNAAE--GSFDIVFTFEEKVFDMVAEGS 122
BLAST of mRNA_H-paniculata_contig4271.10927.1 vs. uniprot
Match: A0A836ASG4_9ROSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836ASG4_9ROSI) HSP 1 Score: 128 bits (322), Expect = 8.950e-31 Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query: 652 KYAVVCSSNVNRSIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDILASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESRVFDLVVEG 1011
+YA+VCSSN NRS+ A LL++H F V SYGTG VKLPG R P + FGTPY ++ D L +D EL++RN +L +L+R++ K AP+RWQ D SF VV+ FE +VFD+V+EG
Sbjct: 4 RYAMVCSSNQNRSMEAHSLLKRHGFDVSSYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSGVKLAPQRWQDNAAD--GSFTVVLTFEEKVFDMVLEG 121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 216.5 |
| Seed ortholog evalue | 2.4e-53 |
| Seed eggNOG ortholog | 2880.D8LTB5 |
| Preferred name | SSU72 |
| KEGG ko | ko:K15544 |
| KEGG Pathway | ko03015,map03015 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251 |
| EggNOG free text desc. | RNA polymerase II subunit A C-terminal domain phosphatase |
| EggNOG OGs | COG5211@1,KOG2424@2759 |
| EC | 3.1.3.16 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03019,ko03021 |
| Exons | 2 |
| Model size | 3042 |
| Cds size | 1257 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4271.10927.1 >prot_H-paniculata_contig4271.10927.1 ID=prot_H-paniculata_contig4271.10927.1|Name=mRNA_H-paniculata_contig4271.10927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp
MKRARETTGGSVSVVVPPVARAVQNNSKLPFRRNTTTSSTSSTSSSSSSF
STSSSCSSYDGTKAATPAVMSKNNQQQEQQQQQYQHQHQLQLKTKNRVGA
LAQAPAVVRPLPSLPPILTFADDTTKGSKLSEHTSRLETPAGPEMKKIRT
TPPPPPVQQQSEYPGWRAAAIAIQENGPLSVGKGLSRRKYAVVCSSNVNR
SIMAQRLLEKHDFSVKSYGTGREVKLPGKDSRSPQSFAFGTPYVEIRDIL
ASQDEELFRRNSVLGLLERDAATKKAPERWQALKGDEVASFDVVVCFESR
VFDLVVEGTWLLVCCGYYQLIVVRAVWDRGSTDMRRIWSVRRLGEYGISG
RFCNSEKNLHRDDVSVSYSMGCPYLVPLIIFFGFWYHGCGFYTSAASTVN
MLPRNRLEAVLCFYKAAV* back to topmRNA from alignment at H-paniculata_contig4271:2..9457- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4271.10927.1 ID=mRNA_H-paniculata_contig4271.10927.1|Name=mRNA_H-paniculata_contig4271.10927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9456bp|location=Sequence derived from alignment at H-paniculata_contig4271:2..9457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCCATTACGCTGCACGATTATTCCTCAACCCCTGATTAATCAACCAA
CTCGTGGTTACAAGCGTGGGAACCAGCAACAGAAGACATGAAGAGGGCAC
GAGAGACGACGGGGGGTTCGGTCTCTGTTGTGGTACCACCGGTAGCGAGG
GCGGTGCAAAACAATTCGAAATTGCCGTTTAGAAGAAATACCACCACCTC
CTCAACCTCATCCACCTCCTCGTCTTCCTCTTCCTTTTCCACTTCTAGCA
GCTGCTCTTCCTATGACGGCACCAAGGCAGCAACACCGGCTGTGATGTCG
AAAAATAACCAGCAGCAGGAGCAGCAGCAGCAGCAGTATCAGCATCAGCA
TCAATTACAGCTAAAGACGAAGAATCGCGTGGGAGCACTGGCGCAAGCAC
CTGCAGTCGTTCGCCCCCTCCCTTCCCTGCCTCCGATACTAACTTTTGCC
GATGACACCACGAAAGGATCGAAATTGAGCGAACATACGTCACGGTTAGA
GACTCCGGCAGGCCCAGAAATGAAGAAAATTAGAACAACACCGCCACCAC
CCCCAGTCCAGCAGCAGAGCGAGTATCCAGGTTGGAGGGCAGCAGCCATT
GCGATTCAGGAGAATGGACCCCTGTCTGTGGGGAAGGGTTTGTCCAGGCG
AAAGTATGCCGTAGTATGCTCGAGCAATGTTAACAGGAGCATCATGGCGC
AAAGATTGCTCGAGAAGCACGATTTTTCGGTTAAATCCTACGGGACAGGC
AGGTAAAGTGACGGACGAATGACGAATGGTGGTGAGGGTGTGGGAAGGAG
AGCCTATGATTCCAATGCGGGTTGTTCCAGCAGAAGATTACTACACACGC
GGTTTCACGTAGAAGTAAAGACCGTTGATACCTGTGCGTTGTTTAGGGCT
GTATCTGTTATGAAAATGAAACGTATAAAGCAAAAAGTCGCCCAAGGTAC
GGGGTGATGAATACTCATCAATAACCCGTTGTATCTGTGGTTCAAGCTAC
CACTACTCACATACGAACGTGGAACCCTATATTGACAGGTTATTTTTGGT
TCTTGCAATTTCCTCGATCCTTCTTTGTGCATAGTCTGCTTTCCGAAATG
TTCGCCTTTTGAGTGCAGTTTATGTTAGCCTCGACCTGAGCATTGTTCGG
GGTTGATCAGCGTGGTACATACTCTACCAGTGAAGAAGACGTCCGACGTT
TAGAGTACCATGTTTGTTGAATTTTGAAAAATGACTGCTGATATATATCG
AGTCGGAGGCACGGGTATCGACGAAGAGCGTCGTCCCGGCTGGACTCGGG
GAACTCTATCACCGGTGGTGAACCCGCTCGCCGCCGGTGTGTTACTGCTC
ACATGTTTGAAGACCATTTACCGGTGCCTTTTCGGAAGTGTAACACATCG
CCACGGTCTTGTACTTGCCAGGCTCGCGACCAATGTATTGAATTTTTGGA
GTCGCGAGCCTGGCAAAACCTTAAAAGACGATGACGACTAATTGTTTCCC
GAACATACGTTTATATAGAGAAAACTTTTAGCGTGGGAATCGAGTTTCGT
CAGGTAACATCAGTCTACATCGATAACAAACTGGTGATTTATCGCGGCGA
ATGAAATTGACCCTAAAAAGCAGATTGACGCTTGACGAAATCCAGGCCGC
GCCACAGTGGATAATGTAATACTGATCATAAGTACTGAATATCTTGTATT
TATATCATAACACGCAGCTGTCTTGTTCTAGCAAGCTTCTAAAGACTGAC
TCTCAGTGAGCGGTGGGTCAAAGGAGGCTTTTGTCGTAAAATTTGACAAT
TTTACTCGTGCTGGGTCAAGTTTTTATTCAATATTTCTGGTATAATGAAT
ATTCCTTGTAGAGGCTCACATCATCATTGCATCACACCAGCATCGGGGCA
CATCATGAGAGACCGACCGACATGTGAAAGGTGTGCAACGCTACCCAACG
CGGTCATAAGCGCGAGCGTCAAATTATGACAACATGAACAGAATAAATAT
TTCAAAAGGTCTTGAGCCTCACATTATAAATGTGAGTCCTGTTGCACGCA
ATCGGTTGGAAATTAAATGAATTTTTTTGCTATCCTCGCAATTAATCGGA
AACTGCTCCGTGTATTGATGCCCTCACCGAAGGGTACTAAAAACTGGTGA
CACATTTCAGGGTTTTGTTGTCTAGAACATGAAGGAAAATCCGAACCTGT
TGGAAAATACTCTAAAGATTGGTAAAGCACAACGCGTATTTTTTTTTCAA
GGATTTATGGTTAAAAACTGCTGCGTGTTTTCACGGTTAAAAAGCAATTG
GAAATTGTTTCCCACGAAACCTGGACACCCAGATTCATAAGGAAGATGTC
CTATATGTGGGTAGTCGACACCACCGAGCTCAAAAACTATTCATCTCAAT
GAGGGGAGCGTAGCTCACTTTCTTATATCAGTGGGCATCCAGTTTTCACT
AACGCGTTCGTCAGTTCAACCGTGGCAAGTAACATGTTTTACAATGTCAT
AGTGCGATATCGTCGAGAAACGTGTGAAACCATAAATGGTGTGCGCAGAA
AACGGCTGATTTATTCTGCTGTGACTACACAATTATTTTTGTCCATAATT
CCAAGTGCCATCCACAGTACTTCAATTTGGTGAATTGAAAGCTGCTTCTC
GCGAGGAAATACCGCCAGTCATGATGCATCGTATATCTAGGCTATTGGAA
AGCGATTCTACATTTGTTTTTCTAGTGAGCGCGGACTGAATACAGTCCCT
TCTGCACTATTTGTGTTCGTATGAGAGCCTTTAACACGCGTGATTTCACC
CTCCGGCACGGATCAAGTGCAAGAAAAAGTGCCTCGTACAGCTCCTAATA
TCTACTCTTTTGTGTGCATCGAGGAACTAGGGTGAATTCAGGACGACTTT
CAAGGTTTCGATGTCCACAAACAGGAAACCGAAAGAAGTTCTTTGTTTTA
CACCGATAACACCTGCCTTGCTGCCACGTTCAAGGACGGGGCCGACGAAA
ATGGAAACAATCAGTGATGTTGCAGGGAAACGTTCGTCGAGCCTTGAAAA
TGCTGGTAGTACAGTACAGGATAATGGATTTCTCTTCTCAACGATACAGT
CGTGTCTAGAAGAATGGAACACCTCGCGTGTAATAATATATTGATCTGAT
GCGGTATTCCTTGGGCGTATACACCGGTAGACCCTACGTGCGGTTGTGTG
GGAACAAATCGATTATACCTGCAAAACCTATTGTACCTTATATGAGAATA
ATGTCCATCACGTCTTACAGAAAATACCTGATACAGGATGAAAACCGCCT
TGTGTGCGAATTATTGCCGTACGCTGTGGTGAATGACTTTGTTACCGCAA
GTAACTGATATGCTGGGGCATTCGTGGCTAATTCCAGCAATTCGTGGCTA
ACTCTCTGGGAAATCTAATTCATTCCCTAGTATGTCACGAGCTGACGCTT
CGAATACAAGATGCAGACTTACACCATCCGGAACTGGGAGAAATGCTCAT
TTGCTTGCTTCTCTTCACCCTCATAACGAAATTTGAACGTAGACCCGGGA
AGCCGAATAGGAATAGCATTTTATAGTAAATGCACCCGTACTGCAAACAG
TCATAATGGTCAAAAGCGTAAAGTGATCGAACGAAGTTTCAACCATAGAA
AACTGCTGTTCACGACCCCCATCTCCGAAGAAGCTGTGACTCCGTGGCTT
GGTACTTGTTATCTTGCCGTGAGCTTAAGCTCCTTCCCTCACAACGCTTC
CGAGTGGTGCATACAGAGGATGTACACTCTGGGGTGGAAAGGAAAGGAGC
TGTGACTCCGCATGTATCGATGCCCTCAAAAATCAGTGTAAGCGTGGGGC
CACCTTTCCTGGGGATGCCACCGATTAAACAGCTTGGTTAATGCCGGAGT
ATGACAAAGAAAACACTGTGCAACCATTATATACATATATATATATATAT
ATATACAATATTTTTTCAACACCCGGAAGGCTGAGGCAAAAACGTGTATC
CGATAATTCCATACTGGAGTATTTTTTATCAAAGTATGTCTACATTTCCT
TTTACAGAACAGAGTTATTTATTCCTCTGCGGGTTAGGCGCCACTCCCGT
TCGGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCACTAAGAAACCTC
AGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGA
GCGTAGATCCGTAATTCGTTGATTATTTCATGGATGGATGAACAAATAAT
TGCTGATGCTGGTGTTTTCGTTAGAGGGTCTATTTTCTGTAGAGAAAGGG
GTAGGTATGTGCCATGCACAGCTATGCAGTAACATACATGTAAGCATCAG
CAGGAACCGTCCGTCGAATGCTATTTAGAGCCGGCCCAAGAGCTGGGCCG
GTAGGCACACAGCAACCGTGGTCTTCAGTTACGCACGCACCATCAGCAAT
AGAGAGCAGTGCGACACAGATTGTTTTTGGGCAGTTTTGTGTAGAGTCCA
GGAAGTCGTCTACTAGGGCCTCTAATTCATGTCCCGTCCCAATTGGAGTG
AATGAAAAATACTTGGCGTATACATCTTCTCGATCCGTCAAGTGGCCTAT
TTTTTGCGGTGTGCTTTCTCGTTTTCGAGGCCAGCATCTAGCCCAAAGCA
ACGTCAATTGGCTCAGGTTGGTCGGAGCTCCAGACGTTTTATTCTGGAGC
GTCAGACACCGCTGAAAATGGGTCGTCCGCGCTGCGGCCTGTAGTAGCAC
ACAGATTCAGGGTGAAATTGGTGACATATCTCGGTAATGATGTAGATACA
TGAATTGCAGGGAATTTAGAACCATAATTACATGTGAATGTAATAATAGT
GTCTTGCGTAAAAAAAATAGTTACCTAGGTATTGACCGCACCCTCGAGAA
CAAGAACAAAATTGGAGGAAAAACATCTTTGTGACCTGAAGTTATCAAAA
TAAATTTGTAGAAGGTATGACTAAATGTCAATTGCATTCCAAGTAAATCT
GTTGTGATATTTTTGACAATACCATCCAACCGTGTAAATTCTTGCAATCC
ATGCAAAACCACGGAGGTATTTTTAGCGACGAGCGCCCACATTAATTATG
GATGGTCCTTCATGATGTTGTATTGGATTAAAATGCCCGGCAAAAGTTGC
ATTCAGTAGGATGTAATTGATCACATCGTGATGGCTTCCTCGGCGTTGTT
TTGACACTTGCAGATAGAGTCGACAGGAAAATACGAAAATATTTGCCGCC
AAATTGCGTGTGCGTTGTCGATGAAAGTGCTGGCTGATCTACTGCTTCAG
GATACTCGGAATTGTAGTTCCTTCCATCGATCTCGTCCTCTTTAGCGAGA
TTTCGATAGTATGCGTCTGTTTCACACATTTCACCACTATCGAACCAGGA
GCGTGTACCAGAAATATAACGATCTTTTCGTCGTCCCCTAAACTACGAAA
TTAATCATCGAGGGGCTTTGTATTCAAAACTTGAACCAATCTATAGCCAC
AAAGTTCTGATCGGCTGTGCAATGAATAATCGTGGATGGTTGGCCTGACC
ATTGGTCGTCCTGCACAATCCGCAATGATCCTCTGGCATCGACAAGGTCG
AAAATGACAGCAACTTGATGCTCCCTCTTGAAGGAGATGATTCTTCTCCC
AATATTTTGCGGCGGGCCGTTGAATGCCTTGATTGTTCCTGTTGAGTCTT
CGGTGCCAAAAATGTTGAAGGTTTCATCCGCGTCGGTCGCCCTACTTCGG
TGGAGGCTCTTCACTACTGGATGTGGAAGTGGAGCTCGAGGCTTTGCGCG
ACAATCTTTTGAACCAAAGTATATGATTCCCATCTCAGAAATGAGGAAGA
ATTGGATATAGTTGCTGGTGATGACATTGTCCAAGTTGGACACGAGGAAA
CGGAACTGCCACTGTTGAGTTGGTCAGCCCAGTGTAACATTGGTTCTCAT
GGTTGCGCGCCCCATGACTCTAGATTTCTAATCCAAATCCATCGATGAAT
CCGCATCACCTTACCCATCCTCTCTGCGCACGGATAACTCTTCATCGATG
ATTGTAACTTGTTTTGCATCAAGCATGACCGGTTTGTCACCTATTACGTT
ATTGGTGAGCAGACACATTGCCTCACGTTATTCTGCAGGCGAACAGTTTG
AGACTCGGTACGTCGTGGTGCCATACCGCCCATCCTTTGGATATGGACTG
GCATGTCAGCACTGATACACTTTCATTCCCATGCAGTAGTAACTATTTTT
CCGTGAAGTCCCCAGATCATTTTGGCAGTACCTGATGCATGTTCCATAAG
GTGGTAATATTGCTGTTGGGTATTTCTGTCGAGCTTCGGGTACAGTAAGG
ACTTGATTTTGCTCTTATCTCGACTTGAGAGGGAATCAGTCTCCTTCACT
TGTCACATGTCCAGAAGCATCACCGTTACGCTCGGCACATACCAATTCTC
AGCTACAGCTGCGTTGCTGATGAACTCTCGACTCAATTGACGAGAATGTA
GTACATCGAGCATCTACAGCTATTTCCTTTTGTCCCAACTCATTCGAGCA
CAGAAAAGAACAGGGGCAGGTGTTCGAGTCTTTTGTAATCTCGTCATGCC
AAAACAATATTTCAGATGTGTTTGAGATGATCATATCAACAGGTTTAGGC
GAGAGGATGGTGAGCACGTCGTTAGATAAGATGAAGCACATACCAGAGCC
CACGTTCCTTCACTTGGATAGGCCTACGACCTATGGACAACAGAGATCTT
GAGTCAATGGGTGTCTAGATCGAAACCTAATGGATGTCAGTATGTGTACT
CATAGAGATGGAGCAGGTTATTTCACCGGCGGCGAACAGTATCAAAACTG
ATGACTTTGACTACTGTCAGCGTGTACTGGTGGCGTACAGGGCATAATTT
ATGATGCTGCGGCAGTTCAGATTTTCATGACATTCGTGAAAAAGATGGCT
CGTCAAAATGTATGTTGAACATTTTGTAAGGCGAGTTTACATACTGTGTT
GGGATGATTTCTATGAACTGTGTTGTTGCGCGTTATCATTCCATTTACTC
GCCCTCCCCTCCACAAACATTCGATGTCCCGAAAGCATTTTATTCATCAT
GACCCCCGACTCAACTGGAGGACCTACCCGAATACGCTGTGTTCGGTGTT
ACTCGTGTGTTGACAGGGAGGTGAAGCTACCTGGAAAAGATTCTAGGAGT
CCCCAGTCGTTCGCGTTCGGCACACCCTACGTGGAGATCCGGGACATTCT
GGCAAGTCAAGACGAAGAGCTATTCCGACGTAATAGCGTGCTTGGTCTGC
TTGAGAGAGACGCTGCCACCAAAAAAGCCCCCGAGCGATGGCAAGCTCTC
AAGGGCGATGAGGTGGCGTCGTTCGATGTGGTGGTTTGCTTCGAGAGCCG
CGTCTTCGACCTGGTCGTGGAAGGTACATGGTTGCTTGTTTGTTGTGGTT
ATTATCAACTAATTGTTGTACGAGCGGTTTGGGATAGAGGGTCAACTGAT
ATGCGAAGAATATGGTCAGTGCGTCGTCTAGGGGAATACGGTATAAGCGG
TCGATTCTGTAACAGCGAGAAGAATCTTCATCGTGATGATGTGAGTGTCT
CATATAGTATGGGCTGTCCGTATTTGGTCCCTCTCATTATTTTTTTCGGT
TTTTGGTATCACGGCTGTGGTTTTTACACTAGTGCGGCTAGCACAGTAAA
TATGTTGCCGCGCAATCGACTCGAGGCGGTTTTATGTTTTTATAAAGCTG
CCGTCTAGTTTCGGGTGGCACGGTTGCTGTCAAGTATGTGTGTGCTCTAA
CTCAGCGGAGGAAGGCAGTGGCTACGGTATGCCTTGCGGTTCCACTCTGG
CTATTTAGGGCTAGCACGTCGCAGCAGTCTTTCTGTATTTGCCCGCGGTG
GTTCATTCGACGTTAGCATTTTTTGCACCAAGCATGGCTTGATTGTCCAT
GCCCTTGATTAGTTTGAGACATGAGAAACTCGGTTCACGTAAGAACGCCG
TGTAGATCCACGGAACATCACTTCATTCTCAAGCTGCTGGATCTTCAATA
TGTTGGGTGTTGCCCCCTCTCAACCTCTCCCACAATCAGTGAGGTGAGTG
CATATTGTTAATTGGGCTACGGGGCTTACATATTTTTTTTAACTCTTAAT
CCTTCAGCCGTCGGAGATCTTGAACACCTACTAAATTCTAGATCATGTCG
AGGAATGTATCGAAGGGTCAAATTCACCGTTGGAATGCGCTATTATGGTT
TTAGGTTTGATTGTAGCACCCCAAGTATGGCCCGAGTTTTGAGAGGAAAG
GTTATGGCGAAACCTTGGCAAGCCCCAACTGTTTCACGCACACCAATTCG
AGATCTTCGTCTGTACCGTCCTGTACCGGCATCACTCATGTAATGGACTG
GCTGTCTAAACGTCAGCCGATCCCAATGGCCATAATTATGTCTCTTTTTT
CTGTCGTTATTCAGCTGAGGATCAGGTGAGGATTCTGCAGCGACTGGTGT
CCCGAAGATTTGACGTTTTACGATGAACCTGCTCCTGTTTCGTCCGTGCC
TGTCCTCTGCATCTTATAGCCACGCCTCCGCCGTTGTCCTCAGTTTGTCG
AGTCCTGAACATTCTGTCTGGGCTTAGTGTCATTCTTGCTGCTGTTCCAA
CTTGAACTCGCACATCCTCGGTGCTACATGAGAGCAGTCTGTACTTGAAG
TCCAACAACCAGAGATTCTGTCATGACTTCGCCTCACATAGCAACGTGTT
GATGCAACCATTTAGCCATGCCTTGTTCGTTGCACGCGGTCTTTACGTTG
GCTTATGTGTGGAACTGCGGCATGTCTGGAACAACTGTCGGGTGCTGATT
TAACAGATGAACCAGTCAGCTAGAAGTTGACCCAAGAAGCGAACCTATGA
AGAAAATGTCGTAGCCAGAGTTGGAGAAATCTGTCAACATGGTGACATTA
TAATGTCGAAATTCGCACCCTTTCGTGACTTGCAGCTGGGCGTCGAGGTC
GAAAGTGATAATTACTTCCCTTCACGAGCATGACAGCAGGGCGGCTAGGA
TAGAAGAATATGTTCATTCTGTGACTCACAGTCGGTGACTGCTGAGCGGC
AGCGATGAACGCCTGACGTATCATGCCCCCTGCCTCTCCGTGCTAATGGT
GGGAGTGAGGCATATGTCTCCCCACCAGTCTGAAAGTGTCCAATTGACAT
CATGCCTCTCTTTTTTTCTTTCCCCAACCGGACTTCGGGCCAAAAAAAAG
GCGCGATTTCATTCGTCACACGTTGTCAATACCCTGAATGTGTCAAGAAC
ACTCGAACGTTGTTCGGAACACACGAGATAATCCTCGAGAGCGTCGCTGG
TGAATATGACGCGGTCCACCACGGACCTACGCCCGAGTGGGTAGGGTAGC
TCGTGTACTGAGCATGACTGGAAGTCTAGTCAGGGCCTATTTAGTGGGTG
GGACTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4271:2..9457- >mRNA_H-paniculata_contig4271.10927.1 ID=mRNA_H-paniculata_contig4271.10927.1|Name=mRNA_H-paniculata_contig4271.10927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at H-paniculata_contig4271:2..9457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAGGGCACGAGAGACGACGGGGGGTTCGGTCTCTGTTGTGGTACC
ACCGGTAGCGAGGGCGGTGCAAAACAATTCGAAATTGCCGTTTAGAAGAA
ATACCACCACCTCCTCAACCTCATCCACCTCCTCGTCTTCCTCTTCCTTT
TCCACTTCTAGCAGCTGCTCTTCCTATGACGGCACCAAGGCAGCAACACC
GGCTGTGATGTCGAAAAATAACCAGCAGCAGGAGCAGCAGCAGCAGCAGT
ATCAGCATCAGCATCAATTACAGCTAAAGACGAAGAATCGCGTGGGAGCA
CTGGCGCAAGCACCTGCAGTCGTTCGCCCCCTCCCTTCCCTGCCTCCGAT
ACTAACTTTTGCCGATGACACCACGAAAGGATCGAAATTGAGCGAACATA
CGTCACGGTTAGAGACTCCGGCAGGCCCAGAAATGAAGAAAATTAGAACA
ACACCGCCACCACCCCCAGTCCAGCAGCAGAGCGAGTATCCAGGTTGGAG
GGCAGCAGCCATTGCGATTCAGGAGAATGGACCCCTGTCTGTGGGGAAGG
GTTTGTCCAGGCGAAAGTATGCCGTAGTATGCTCGAGCAATGTTAACAGG
AGCATCATGGCGCAAAGATTGCTCGAGAAGCACGATTTTTCGGTTAAATC
CTACGGGACAGGCAGATGAAGAGGGCACGAGAGACGACGGGGGGTTCGGT
CTCTGTTGTGGTACCACCGGTAGCGAGGGCGGTGCAAAACAATTCGAAAT
TGCCGTTTAGAAGAAATACCACCACCTCCTCAACCTCATCCACCTCCTCG
TCTTCCTCTTCCTTTTCCACTTCTAGCAGCTGCTCTTCCTATGACGGCAC
CAAGGCAGCAACACCGGCTGTGATGTCGAAAAATAACCAGCAGCAGGAGC
AGCAGCAGCAGCAGTATCAGCATCAGCATCAATTACAGCTAAAGACGAAG
AATCGCGTGGGAGCACTGGCGCAAGCACCTGCAGTCGTTCGCCCCCTCCC
TTCCCTGCCTCCGATACTAACTTTTGCCGATGACACCACGAAAGGATCGA
AATTGAGCGAACATACGTCACGGTTAGAGACTCCGGCAGGCCCAGAAATG
AAGAAAATTAGAACAACACCGCCACCACCCCCAGTCCAGCAGCAGAGCGA
GTATCCAGGTTGGAGGGCAGCAGCCATTGCGATTCAGGAGAATGGACCCC
TGTCTGTGGGGAAGGGTTTGTCCAGGCGAAAGTATGCCGTAGTATGCTCG
AGCAATGTTAACAGGAGCATCATGGCGCAAAGATTGCTCGAGAAGCACGA
TTTTTCGGTTAAATCCTACGGGACAGGCAGGGAGGTGAAGCTACCTGGAA
AAGATTCTAGGAGTCCCCAGTCGTTCGCGTTCGGCACACCCTACGTGGAG
ATCCGGGACATTCTGGCAAGTCAAGACGAAGAGCTATTCCGACGTAATAG
CGTGCTTGGTCTGCTTGAGAGAGACGCTGCCACCAAAAAAGCCCCCGAGC
GATGGCAAGCTCTCAAGGGCGATGAGGTGGCGTCGTTCGATGTGGTGGTT
TGCTTCGAGAGCCGCGTCTTCGACCTGGTCGTGGAAGGTACATGGTTGCT
TGTTTGTTGTGGTTATTATCAACTAATTGTTGTACGAGCGGTTTGGGATA
GAGGGTCAACTGATATGCGAAGAATATGGTCAGTGCGTCGTCTAGGGGAA
TACGGTATAAGCGGTCGATTCTGTAACAGCGAGAAGAATCTTCATCGTGA
TGATGTGAGTGTCTCATATAGTATGGGCTGTCCGTATTTGGTCCCTCTCA
TTATTTTTTTCGGTTTTTGGTATCACGGCTGTGGTTTTTACACTAGTGCG
GCTAGCACAGTAAATATGTTGCCGCGCAATCGACTCGAGGCGGTTTTATG
TTTTTATAAAGCTGCCGTCTAGGGAGGTGAAGCTACCTGGAAAAGATTCT
AGGAGTCCCCAGTCGTTCGCGTTCGGCACACCCTACGTGGAGATCCGGGA
CATTCTGGCAAGTCAAGACGAAGAGCTATTCCGACGTAATAGCGTGCTTG
GTCTGCTTGAGAGAGACGCTGCCACCAAAAAAGCCCCCGAGCGATGGCAA
GCTCTCAAGGGCGATGAGGTGGCGTCGTTCGATGTGGTGGTTTGCTTCGA
GAGCCGCGTCTTCGACCTGGTCGTGGAAGGTACATGGTTGCTTGTTTGTT
GTGGTTATTATCAACTAATTGTTGTACGAGCGGTTTGGGATAGAGGGTCA
ACTGATATGCGAAGAATATGGTCAGTGCGTCGTCTAGGGGAATACGGTAT
AAGCGGTCGATTCTGTAACAGCGAGAAGAATCTTCATCGTGATGATGTGA
GTGTCTCATATAGTATGGGCTGTCCGTATTTGGTCCCTCTCATTATTTTT
TTCGGTTTTTGGTATCACGGCTGTGGTTTTTACACTAGTGCGGCTAGCAC
AGTAAATATGTTGCCGCGCAATCGACTCGAGGCGGTTTTATGTTTTTATA
AAGCTGCCGTCTAG back to top
|