mRNA_H-paniculata_contig42706.10925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 57.8 bits (138), Expect = 1.860e-7 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 1 EIWICDNGATKHMTHDSDFLFYYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 234
++WI D+GA++HMTH S+++ Q D HV L DG + + G G +++Q D + + L V ++P L+ +L S+G
Sbjct: 286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM) HSP 1 Score: 52.4 bits (124), Expect = 1.460e-5 Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREELRI-NLKTGRVL 312
I D+GA+ HM D + ++ G V +A+G+R+PIEGVG L L FD + + ++P + +LLS+ K D G + +++ +LKTGRV+
Sbjct: 308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI00142DAD44 (uncharacterized protein LOC117126729 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DAD44) HSP 1 Score: 52.4 bits (124), Expect = 1.500e-5 Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYR 264
I D GA+ HM D+ + Y + GHV +A+G+R+PI G+G L L F DS+ F+P + +LLS GH ++
Sbjct: 379 IIDYGASHHMISDNSLIKYIEPAQGHVMIANGDRIPIRGIGRLKL-FNKDSKAF--------FMPEFTSNLLSDNGGEYTGHAFK 454
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C) HSP 1 Score: 51.2 bits (121), Expect = 3.800e-5 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
I D+GA+ HM D + + GHV +A+G+R+PI GVG L L F DS+ + ++P + +LLS+ K +D G EY
Sbjct: 400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 3.800e-5 Identity = 30/109 (27.52%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 1 EIWICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE--YRCSREELRINLKTGRVLSAE 321
+IWI DNG+++H+ +D+ +L +ECD +G L I G + L+ +++L+ V F + H+L+S G+ G+ +R R ++ VL+ E
Sbjct: 292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMAVLNEE 400
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B) HSP 1 Score: 51.2 bits (121), Expect = 3.870e-5 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
I D+GA+ HM D + + GHV +A+G+R+PI GVG L L F DS+ + ++P + +LLS+ K +D G EY
Sbjct: 415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90) HSP 1 Score: 51.2 bits (121), Expect = 3.890e-5 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
I D+GA+ HM D + + GHV +A+G+R+PI GVG L L F DS+ + ++P + +LLS+ K +D G EY
Sbjct: 414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5) HSP 1 Score: 50.8 bits (120), Expect = 4.890e-5 Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREELRI-NLKTGRVL 312
I D GA+ HM D + ++ G V +A+G+R+PIEGVG L L FD + + ++P + +LLS+ K D G + +++ +LKTGRV+
Sbjct: 264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH) HSP 1 Score: 50.8 bits (120), Expect = 5.270e-5 Identity = 25/90 (27.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query: 7 WICDNGATKHMT-HDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSR 273
W D G + HM+ H F+ + + + +R+P++G G + +Q + + ++ V ++P LSH+LLS+GK ++ G++ R R
Sbjct: 287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFR 373
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA) HSP 1 Score: 48.1 bits (113), Expect = 7.820e-5 Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 237
I D+GA+ HM D + + + GHV +A+G+++PI+G+G L L FD E +Q ++P + +LLS+ K
Sbjct: 33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42706.10925.1 >prot_H-paniculata_contig42706.10925.1 ID=prot_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp EIWICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFback to top mRNA from alignment at H-paniculata_contig42706:999..1322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42706.10925.1 ID=mRNA_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig42706:999..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42706:999..1322+ >mRNA_H-paniculata_contig42706.10925.1 ID=mRNA_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig42706:999..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |