prot_H-paniculata_contig42705.10923.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42705.10923.1
Unique Nameprot_H-paniculata_contig42705.10923.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 4.000e-56
Identity = 104/214 (48.60%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    1 MQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 188
            M+EA HRGV AT++ L  YC W  M+ +V EFV+QCLHC+DS+SG  V RP GE +HG   GEVLHFD LH+G S PL    +    G  YLL+++DD + F                         G P V+VSDT  +FKN ++  L  ALG + RF+VANS WSNGT +RM RE++ T KAVL E  R V +W   VP VQWALNTA+R R
Sbjct:  424 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRER 637          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 4.050e-55
Identity = 104/214 (48.60%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    1 MQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 188
            M+EA HRGV AT++ L  YC W  M+ +V EFV+QCLHC+DS+SG  V RP GE +HG   GEVLHFD LH+G S PL    +    G  YLL+++DD + F                         G P V+VSDT  +FKN ++  L  ALG + RF+VANS WSNGT +RM RE++ T KAVL E  R V +W   VP VQWALNTA+R R
Sbjct: 1200 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRER 1413          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.910e-54
Identity = 100/216 (46.30%), Postives = 132/216 (61.11%), Query Frame = 0
Query:    1 MQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDST-------------------------VFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 190
            M+EA HRG  AT+  L+ YC W  ME +V +FV+QCLHC+DS++G +V RPLGE +HGT  GEV+HFD L++GAS PL +  +    G  Y+L+++DD +                         + G P V+VSDT  +FKN +++ L TALG    FSVANS WSNGT +RM REV+ T KA++ E      +W   VP VQWALNTA R R G
Sbjct: 1302 MKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYG 1517          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.880e-47
Identity = 91/190 (47.89%), Postives = 114/190 (60.00%), Query Frame = 0
Query:   25 MEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 188
            M+ +V EFV+QCLHC+DS+SG  V RP GE +HG   GEVLHFD LH+G S PL    +    G  YLL+++DD + F                         G P V+VSDT  +FKN ++  L  ALG + RF+VANS WSNGT +RM REV+ T KAVL E  R + +W   VP VQWALNTA+R R
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRER 190          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3LWA5_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LWA5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.910e-29
Identity = 74/211 (35.07%), Postives = 107/211 (50.71%), Query Frame = 0
Query:    4 ASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLDDSTV-------------------------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARL 189
            A HRG   T   L     W  +  +VA FV +C+HC+ + +G ++ RPLGE L  T+  E LHFD L +             GG  Y+L+L D+ +                          FG  R +VSD   +F+NR+++ L  ALGA H F+ A ++W+NGTV+ +NREV+   KA+L++    V +W   +PVVQ ALN     RL
Sbjct:  287 AGHRGAKTTAKALEDLFSWRSLRKDVAVFVSECMHCMTTATG-KIPRPLGETLRATKPNEQLHFDFLSMAEG---------AGGLKYVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWPRVLPVVQGALNQMPADRL 487          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 118 bits (295), Expect = 2.270e-27
Identity = 71/210 (33.81%), Postives = 101/210 (48.10%), Query Frame = 0
Query:    6 HRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLDDST-------------------------VFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 190
            HRG+DAT + +     W  ++ +V   VR C HC+ +R+G  V RPLG  +HG    EV+H D L++G     K+         YLL+L DD +                         VFG     VSD   +FKN L+  L   L  KH F+ A S W+NG+++RM REV+ + +A+L+E      +W      VQ  +N A   RLG
Sbjct:  300 HRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIERMCREVLRSCRALLSEWRLGAKDWPAVTEAVQSVINHAPLRRLG 500          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.150e-23
Identity = 63/200 (31.50%), Postives = 94/200 (47.00%), Query Frame = 0
Query:    6 HRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGAS-DPLKEHEVIRGGCPY---------------LLMLLDDSTVFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARL 189
            HRG D   +HL      D ++  V  FVR+C  C   +    + RP  EL H     E LHFD L +G S  P+K   V++    +               +  LLD    FG P  ++SD   +FKN ++  +   L   H+F++  S W NGT++R+NR+++   + +L E +    EW   +PVVQ  LN    A L
Sbjct:  987 HRGEDVMYSHLRRQFWIDNLKQLVQHFVRECPMCPLVKGERVIQRPHSELWHAERANEGLHFDFLFMGDSFGPMKYILVLKDDLTHFCELIACEAPTADVVVTALLDWHKRFGIPETWISDQGSHFKNHVMKTVAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLNQTPTASL 1186          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3NLV7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NLV7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.560e-22
Identity = 71/210 (33.81%), Postives = 99/210 (47.14%), Query Frame = 0
Query:    6 HRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLD--------------DSTV-----------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 190
            HRG  A +NH     V D ++  VA+FV+ CL CL  R G  + RP GE++      EVLHFD L +GAS          G   YLL+  D              DS V           FG P  +VSD   +FKN +V+ L   L  +  F+ A   W NG+V+R+NR+++   +A++        +W   VP+VQ +LN      LG
Sbjct:  496 HRGQKAMLNHHQRLFVIDHLKETVAKFVKDCLLCLHCRGGRIIPRPWGEVIDCNARNEVLHFDFLSMGAS---------YGDSKYLLVFKDHATHYCELVVADTADSRVTTEALLAWHSRFGIPPQWVSDQGTHFKNDVVAELSRRLRTQQEFTPAYCPWINGSVERVNRDILQVIRAMILAYKVSYKDWVYLVPMVQASLNHTAMPSLG 696          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3VH71_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VH71_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.600e-22
Identity = 69/210 (32.86%), Postives = 101/210 (48.10%), Query Frame = 0
Query:    6 HRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLD--------------DSTV-----------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 190
            HRG  AT  HL      + ++  VA FVRQC  CL S+ G+ + RP GE L  +E   VLHFD L +G S          G   Y+L+L D              DS+V           FG P  ++SD    FKN +V+ L   L ++  F+ A   W NG+V+R+NR+++   + ++ E     ++W   +P+VQ +LN      LG
Sbjct:  135 HRGGAATAEHLRRLFAIEHLDTKVAAFVRQCRLCLHSKGGNIIPRPWGETLECSERNGVLHFDYLSMGESF---------GDSKYILVLKDHASHYCELVVADTADSSVTVEALLAWHARFGVPPTWISDQGSNFKNEVVAELSRRLRSQQEFTPAYCPWINGSVERVNRDILQVIRTMILEYKINHTDWPYLMPMVQASLNHTAVPSLG 335          
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: H3H4D4_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4D4_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 3.130e-22
Identity = 71/210 (33.81%), Postives = 100/210 (47.62%), Query Frame = 0
Query:    6 HRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLD--------------DSTV-----------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 190
            HRG  A V HL      + +    + FVRQC  CL S+ G+ + RP GE +   E   VLHFD L +G S          G   Y+L+L D              DSTV           FG P V++SD   +FKN +VS L   L  + +F+ A   W NG+V+R+NR+++   + ++ E     S+W   VP+VQ +LN      LG
Sbjct:  962 HRGHAAMVEHLRRLFAIEKLNTLASTFVRQCRLCLHSKGGNIIPRPWGETIDCCERNGVLHFDFLFMGESF---------GDSKYILVLKDHASHFCELVVADTADSTVTVEAFLAWHSRFGLPPVWISDQGSHFKNEVVSELSRRLRTQQQFTPAYCPWINGSVERVNRDILQVIRTMILEYKINHSDWVYLVPMVQSSLNHTAVPSLG 1162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE4.000e-5648.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE4.050e-5548.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.910e-5446.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE3.880e-4747.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3LWA5_9STRA1.910e-2935.07Integrase catalytic domain-containing protein n=7 ... [more]
R7Q542_CHOCR2.270e-2733.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A485LNJ2_9STRA9.150e-2331.50Aste57867_23616 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3NLV7_9STRA1.560e-2233.81Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3VH71_9STRA1.600e-2232.86Integrase catalytic domain-containing protein n=1 ... [more]
H3H4D4_PHYRM3.130e-2233.81RNA-directed DNA polymerase n=1 Tax=Phytophthora r... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 67..190
e-value: 1.3E-16
score: 62.4
NoneNo IPR availableGENE3D1.10.340.70coord: 1..43
e-value: 6.0E-7
score: 31.6
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 4..42
e-value: 1.0E-8
score: 35.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 102..190
score: 9.339
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 55..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42705contigH-paniculata_contig42705:658..1302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42705.10923.1mRNA_H-paniculata_contig42705.10923.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42705 628..1302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42705.10923.1 ID=prot_H-paniculata_contig42705.10923.1|Name=mRNA_H-paniculata_contig42705.10923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLR
PLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLDDSTV
FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNR
EVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR041588Integrase_H2C2
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf