mRNA_H-paniculata_contig4270.10922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4270.10922.1
Unique NamemRNA_H-paniculata_contig4270.10922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: A0A6H5KKG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.120e-7
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:    3 TLAND--GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSAPSPA---SKPNASELAPISI 233
            T+A D  G++  +T  S   AG++P+TVPTAS  +I   GL+  +TE YG+DTTYY     A + +   +KP+ASELA + +
Sbjct:   34 TMALDATGAVTGLTYVSGSGAGLVPLTVPTASAASIPTTGLSIQDTETYGTDTTYYLKDDDASTVSRVGAKPDASELAEVPL 115
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BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: A0A6H5JW45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW45_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.630e-7
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:    3 TLAND--GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSA---PSPASKPNASELAPI-SIVAE 242
            T+A D  G++  +T  S   AG++P+TVPTAS  +I    L+  +TE YG+DTTYY     A   P   +KP+ASELA + SIV E
Sbjct:  488 TMALDATGAVTGLTYVSGSGAGLVPLTVPTASAASIPTTDLSIQDTETYGTDTTYYLKDDDASTVPRVGTKPDASELAEVPSIVVE 573
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BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 8.890e-7
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:    3 TLAND--GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSA---PSPASKPNASELAPISI 233
            T+A D  G++  ++  S   AG++P+TVPTAS  +I   GL+  +TE YG+DTTYY     A   P   +KP+ASELA + +
Sbjct:  908 TMALDETGAVTGLSYVSGSGAGLVPLTVPTASAASIPTTGLSIEDTETYGTDTTYYLKDDDASTVPRVGTKPDASELAEVPL 989
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BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.900e-7
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:    3 TLAND--GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSAPSPA---SKPNASELAPISI 233
            T+A D  G++  +T  S   AG++P+TVPTAS  +I   GL+  +TE YG+DTTYY     A + +   +KP+ASELA + +
Sbjct:  935 TMALDATGAVTGLTYVSGSGAGLVPLTVPTASAASIPTTGLSIQDTETYGTDTTYYLKDDDASTVSRVGAKPDASELAEVPL 1016
[Close]
BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.720e-5
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:   18 GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSA---PSPASKPNASELAPI 227
            G++      S   AG++P+TVPTAS  +I   GL+  +TE YG+DTTYY     A   P   +KP+A +LA +
Sbjct:  742 GAVTGFNYVSGSGAGLVPLTVPTASAASIPTTGLSIQDTETYGTDTTYYLKDDDASTVPRVGTKPDAGDLAEV 814
[Close]
BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.720e-5
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 3 
Query:    3 TLAND--GSIVAMTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSAPSPA---SKPNASELAPISIV 236
            T+A D  G++  ++  S   AG++P+TVPTAS  +I    L+  +TE YG+DTTYY     A + +   +KP+AS+LA + ++
Sbjct:  755 TMALDATGAVTGLSYVSGSGAGLVPLTVPTASAASIPTTDLSIQDTETYGTDTTYYLKDDDASTVSRVGTKPDASDLAEVPLI 837
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4270.10922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KKG4_9PHAE3.120e-742.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW45_9PHAE8.630e-745.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ3_ECTSI8.890e-742.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ4_9PHAE8.900e-742.68WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLI7_ECTSI2.720e-541.10WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLJ1_ECTSI2.720e-538.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4270contigH-paniculata_contig4270:11874..13563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size296
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4270.10922.1prot_H-paniculata_contig4270.10922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4270 11906..13563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930298.4853356-UTR-H-paniculata_contig4270:11873..119051622930298.4853356-UTR-H-paniculata_contig4270:11873..11905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4270 11874..11905 +
1691481230.9810557-UTR-H-paniculata_contig4270:11873..119051691481230.9810557-UTR-H-paniculata_contig4270:11873..11905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4270 11874..11905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930298.4995527-CDS-H-paniculata_contig4270:11905..119741622930298.4995527-CDS-H-paniculata_contig4270:11905..11974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 11906..11974 +
1691481231.0016406-CDS-H-paniculata_contig4270:11905..119741691481231.0016406-CDS-H-paniculata_contig4270:11905..11974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 11906..11974 +
1622930298.5192113-CDS-H-paniculata_contig4270:12391..125011622930298.5192113-CDS-H-paniculata_contig4270:12391..12501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 12392..12501 +
1691481231.0189924-CDS-H-paniculata_contig4270:12391..125011691481231.0189924-CDS-H-paniculata_contig4270:12391..12501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 12392..12501 +
1622930298.5366857-CDS-H-paniculata_contig4270:13478..135631622930298.5366857-CDS-H-paniculata_contig4270:13478..13563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 13479..13563 +
1691481231.028567-CDS-H-paniculata_contig4270:13478..135631691481231.028567-CDS-H-paniculata_contig4270:13478..13563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4270 13479..13563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4270.10922.1

>prot_H-paniculata_contig4270.10922.1 ID=prot_H-paniculata_contig4270.10922.1|Name=mRNA_H-paniculata_contig4270.10922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MTVESSGDAGVIPVTVPTASVDNISLGGLTPYNTEVYGSDTTYYFTTGSA
PSPASKPNASELAPISIVAEDSMPVPEDAQEEAVKKTD
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mRNA from alignment at H-paniculata_contig4270:11874..13563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4270.10922.1 ID=mRNA_H-paniculata_contig4270.10922.1|Name=mRNA_H-paniculata_contig4270.10922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1690bp|location=Sequence derived from alignment at H-paniculata_contig4270:11874..13563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCTTGGCCAACGATGGCTCTATCGTGGCAATGACTGTGGAGTCGAGC
GGCGACGCGGGTGTGATTCCGGTCACCGTCCCCACTGCTTCCGTCGACAA
CGTACGTTTTGTTCTTTTCTGCTTGTGTGTTCGATTCTGCTTTGCTTTAT
TTAGTCATTTCTATTGGTTCATGTTTTGGTGTTGCCCCTTGTTTTTCAAG
ATCATCGACGTTGTCTTTTCTCTGTCTTACACTAGGTCTACCTGATCCTG
ACCTCTTTGGATTATCCTGTCTTATCTTTTTTTCCTAATTATTTTGCAAC
AACTGCTGGGATATTTTTCACCGTGCGCGTAGATGTATGTCGCGTGTGGC
TTCATTTCACCTTCATCGGTCGAGCGGTGGATCATGGTAACTCAGAGTAC
TTTATCGCGTCTTTTGCTTTGTAGCGAACGTAGATCATAACCCTGACTGT
TTGGCATTTAGCGAACTCTCTTCCTCTGTTGTCCTCATTTTTCGATTTTT
CTGTTGGTATGCCCACAGATTTCACTCGGCGGCCTGACCCCTTACAACAC
CGAGGTCTACGGGTCGGATACTACTTACTACTTCACCACGGGATCGGCTC
CTTCACCTGCATCCAAGCCTAACGCCAGGTTCGTACCGTTCCCACCGCTG
CGGTAACGTACCAATTCCACAAGACCCAAGTGAATACTTTCAAGTAGGCG
GGTAACTTGGTTTTGGTGGAGAGTAGGGAACAGCTCATGGTGTTGCGTGG
ACGAATTCTTTTTAAATAGCCAATCAACTAATGGCAAATCCAATTTGGTG
TAGGAATGCAAGGGCAGTCGATGATTAGTTCTGTAGCAGCGGGCATCGCC
CGTGTAAAGCGCAGCCTGAGTCGGCCAAAATCTGGTAGAGACCGGCTACA
GAATGAAGATATGAACACTACATCAAACGTCCTACGGACTACAAGGCCAG
CAATCCTCAATCGTTGCATTTCTGTAACACGAAATACAGTATGATTTGCT
CATACTCGAGGAGGCCTTCGCAAGAGGTCCCGCATCCCTGACTGTATGAC
CATGCGATGGCGTTGTGGATGTGCACCAATACTCGAAGGTATTGAACTCA
GCTGTTGCCCTTGGAAGCAAATTCGCGCCATTCAGATTTTCGCAAGGTTT
GTCAATGAACCATCTTTTTTTCGCCATTCGGTTTCATTCTTATCTCGTGT
TTCCTCCGACACGCTCCTCTCATGTCGGTCGAGTGCAAGCATGCCCATGG
CCAGAGCACACCACGTCTATGGTTCGCACCCAGCATGCCACATATTAGAT
AATGACAGGCTAGTTAGTAGTTACCGAAGCAAAACCCGTGTCATATTCCG
CTTCCCCTAACAACATCGCGACATTAATATTGTCAAATCATGTTGAATAC
TCAATATTCACCAACTGCAAGTATCAGTCTCAATTAAATAATAATATAAT
AATAACCATGTTACTCGGAATATATCCACCTTCAGGTGCTGACACTATAA
TTTCATCACTTATTATCCACATTTTGAACAAGCAATACCTGAGAACACGT
GCACTCTCCGTGTACCCCTTTGTTCCTTGTTCGTTTGTTTCTAACCGCCA
CACAGCGAGCTTGCGCCGATCTCGATCGTGGCTGAAGACTCCATGCCAGT
ACCTGAGGATGCTCAAGAGGAGGCGGTCAAGAAAACCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4270:11874..13563+

>mRNA_H-paniculata_contig4270.10922.1 ID=mRNA_H-paniculata_contig4270.10922.1|Name=mRNA_H-paniculata_contig4270.10922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig4270:11874..13563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGTGGAGTCGAGCGGCGACGCGGGTGTGATTCCGGTCACCGTCCC
CACTGCTTCCGTCGACAACATGACTGTGGAGTCGAGCGGCGACGCGGGTG
TGATTCCGGTCACCGTCCCCACTGCTTCCGTCGACAACATTTCACTCGGC
GGCCTGACCCCTTACAACACCGAGGTCTACGGGTCGGATACTACTTACTA
CTTCACCACGGGATCGGCTCCTTCACCTGCATCCAAGCCTAACGCCAGAT
TTCACTCGGCGGCCTGACCCCTTACAACACCGAGGTCTACGGGTCGGATA
CTACTTACTACTTCACCACGGGATCGGCTCCTTCACCTGCATCCAAGCCT
AACGCCAGCGAGCTTGCGCCGATCTCGATCGTGGCTGAAGACTCCATGCC
AGTACCTGAGGATGCTCAAGAGGAGGCGGTCAAGAAAACCGATCGAGCTT
GCGCCGATCTCGATCGTGGCTGAAGACTCCATGCCAGTACCTGAGGATGC
TCAAGAGGAGGCGGTCAAGAAAACCGAT
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