mRNA_H-paniculata_contig42684.10914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42684.10914.1
Unique NamemRNA_H-paniculata_contig42684.10914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42684.10914.1 vs. uniprot
Match: D8LL51_ECTSI (APEX nuclease (Apurinic/apyrimidinic endonuclease) 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL51_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.420e-36
Identity = 73/159 (45.91%), Postives = 110/159 (69.18%), Query Frame = 1 
Query:    1 MDGLSLIGYAFKIGSDLVSRCELVEQCHIKSGRIALRTLRILGSLESARGEVSSNADLAASLIELKQALENANDIVERCKKPKGIRAKIVAGMRVPTLKKGLIKLETELERIMQDLNVPLLTDLRIAIRNLKKQGERDESDSQSAV-----AQSMRDAI 462
            MD ++L+ Y F++GS L+ RCELV+QCH +SGRIA+RT R+LG+L+ A  E S   +  ASL ELK+ LE A D+V RC+K +G+ AKI A M   +LK GL+++E +L+R   DL +P+LTD+R A++ + ++ E + + S S +      Q++RDAI
Sbjct:    1 MDAITLVAYTFEVGSSLLERCELVKQCHTESGRIAVRTARVLGALQKASNEFSCRMEFEASLRELKRVLEEARDLVSRCQKARGVGAKIGALMGANSLKAGLVRVERDLDRAAADLQIPMLTDIRRAVQCINER-ESEATASPSGIDAEMLEQAVRDAI 158
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BLAST of mRNA_H-paniculata_contig42684.10914.1 vs. uniprot
Match: D7FQW6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.140e-20
Identity = 48/132 (36.36%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:    1 MDGLSLIGYAFKIGSDLVSRCELVEQCHIKSGRIALRTLRILGSLESARGEVSSNADLAASLIELKQALENANDIVERCKKPKGIRAKIVAGMRVPTLKKGLIKLETELERIMQDLNVPLLTDLRIAIRNLK 396
            +D +SL+   ++ G  ++ +C+LV+QC  ++ R+A+RT  +LG L SA  +   N  L  SL+EL+  L     +VERCK+P    AK++   R+   K+ L+  E +LER+ +DL +PLLTD++  +  +K
Sbjct:    3 VDIISLVSLIYQAGGAVIHQCKLVKQCPGQAARLAMRTQNVLGLLSSAAEQFEGNVALETSLLELRNVLLRVIQLVERCKQPARFSAKVLRVFRIKATKEALVGAEADLERVTRDLRLPLLTDIKCQLGEIK 134
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BLAST of mRNA_H-paniculata_contig42684.10914.1 vs. uniprot
Match: A0A6H5J9C4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.160e-20
Identity = 48/132 (36.36%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:    1 MDGLSLIGYAFKIGSDLVSRCELVEQCHIKSGRIALRTLRILGSLESARGEVSSNADLAASLIELKQALENANDIVERCKKPKGIRAKIVAGMRVPTLKKGLIKLETELERIMQDLNVPLLTDLRIAIRNLK 396
            +D +SL+   ++ G  ++ +C+LV+QC  ++ R+A+RT  +LG L SA  +   N  L  SL+EL+  L     +VERCK+P    AK++   R+   K+ L+  E +LER+ +DL +PLLTD++  +  +K
Sbjct:    3 VDIISLVSLIYQAGGAVIYQCKLVKQCPGQAARLAIRTQNVLGLLSSAAEQFEGNVALETSLLELRNVLLRVIQLVERCKQPARFSAKVLRVFRIKATKEALVGAEADLERVTRDLRLPLLTDIKRQLGEIK 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42684.10914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL51_ECTSI1.420e-3645.91APEX nuclease (Apurinic/apyrimidinic endonuclease)... [more]
D7FQW6_ECTSI1.140e-2036.36Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5J9C4_9PHAE4.160e-2036.36Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42684contigH-paniculata_contig42684:997..1506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue8.9e-31
Seed eggNOG ortholog2880.D8LL51
Preferred nametop3
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031323,GO:0031422,GO:0032200,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size510
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.5319953-CDS-H-paniculata_contig42684:996..15061622930297.5319953-CDS-H-paniculata_contig42684:996..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42684 997..1506 -
1691481230.5699244-CDS-H-paniculata_contig42684:996..15061691481230.5699244-CDS-H-paniculata_contig42684:996..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42684 997..1506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42684.10914.1prot_H-paniculata_contig42684.10914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42684 997..1506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42684.10914.1

>prot_H-paniculata_contig42684.10914.1 ID=prot_H-paniculata_contig42684.10914.1|Name=mRNA_H-paniculata_contig42684.10914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MDGLSLIGYAFKIGSDLVSRCELVEQCHIKSGRIALRTLRILGSLESARG
EVSSNADLAASLIELKQALENANDIVERCKKPKGIRAKIVAGMRVPTLKK
GLIKLETELERIMQDLNVPLLTDLRIAIRNLKKQGERDESDSQSAVAQSM
RDAILPRPGCSKRERGSNS*
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mRNA from alignment at H-paniculata_contig42684:997..1506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42684.10914.1 ID=mRNA_H-paniculata_contig42684.10914.1|Name=mRNA_H-paniculata_contig42684.10914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at H-paniculata_contig42684:997..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGACTCTCGCTCATTGGATACGCCTTCAAAATTGGCTCTGATCT
TGTTTCGCGGTGCGAGTTGGTTGAGCAGTGCCATATCAAGTCGGGCCGCA
TTGCTCTGCGAACACTCCGAATACTTGGCTCTTTGGAGAGCGCTAGGGGG
GAAGTATCGTCCAACGCCGATCTCGCGGCCAGCTTGATTGAGCTGAAACA
GGCCTTGGAAAATGCGAACGACATTGTCGAACGCTGCAAGAAACCAAAGG
GAATCAGAGCTAAAATTGTAGCTGGGATGCGAGTACCCACATTAAAAAAA
GGCCTGATCAAGCTCGAGACTGAGTTGGAGCGAATTATGCAAGATCTGAA
TGTGCCACTGTTGACCGATTTGAGGATTGCCATTCGAAACTTGAAGAAGC
AGGGCGAACGCGACGAGAGTGATAGTCAATCGGCTGTCGCACAATCTATG
CGAGATGCTATTTTGCCAAGACCTGGATGTTCGAAGCGTGAGCGGGGTAG
CAATTCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42684:997..1506-

>mRNA_H-paniculata_contig42684.10914.1 ID=mRNA_H-paniculata_contig42684.10914.1|Name=mRNA_H-paniculata_contig42684.10914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig42684:997..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGACTCTCGCTCATTGGATACGCCTTCAAAATTGGCTCTGATCT
TGTTTCGCGGTGCGAGTTGGTTGAGCAGTGCCATATCAAGTCGGGCCGCA
TTGCTCTGCGAACACTCCGAATACTTGGCTCTTTGGAGAGCGCTAGGGGG
GAAGTATCGTCCAACGCCGATCTCGCGGCCAGCTTGATTGAGCTGAAACA
GGCCTTGGAAAATGCGAACGACATTGTCGAACGCTGCAAGAAACCAAAGG
GAATCAGAGCTAAAATTGTAGCTGGGATGCGAGTACCCACATTAAAAAAA
GGCCTGATCAAGCTCGAGACTGAGTTGGAGCGAATTATGCAAGATCTGAA
TGTGCCACTGTTGACCGATTTGAGGATTGCCATTCGAAACTTGAAGAAGC
AGGGCGAACGCGACGAGAGTGATAGTCAATCGGCTGTCGCACAATCTATG
CGAGATGCTATTTTGCCAAGACCTGGATGTTCGAAGCGTGAGCGGGGTAG
CAATTCGTAAATGGATGGACTCTCGCTCATTGGATACGCCTTCAAAATTG
GCTCTGATCTTGTTTCGCGGTGCGAGTTGGTTGAGCAGTGCCATATCAAG
TCGGGCCGCATTGCTCTGCGAACACTCCGAATACTTGGCTCTTTGGAGAG
CGCTAGGGGGGAAGTATCGTCCAACGCCGATCTCGCGGCCAGCTTGATTG
AGCTGAAACAGGCCTTGGAAAATGCGAACGACATTGTCGAACGCTGCAAG
AAACCAAAGGGAATCAGAGCTAAAATTGTAGCTGGGATGCGAGTACCCAC
ATTAAAAAAAGGCCTGATCAAGCTCGAGACTGAGTTGGAGCGAATTATGC
AAGATCTGAATGTGCCACTGTTGACCGATTTGAGGATTGCCATTCGAAAC
TTGAAGAAGCAGGGCGAACGCGACGAGAGTGATAGTCAATCGGCTGTCGC
ACAATCTATGCGAGATGCTATTTTGCCAAGACCTGGATGTTCGAAGCGTG
AGCGGGGTAGCAATTCGTAA
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