mRNA_H-paniculata_contig42672.10911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42672.10911.1
Unique NamemRNA_H-paniculata_contig42672.10911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42672.10911.1 vs. uniprot
Match: D7FVF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.560e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 VLPPGAPMVVLSRQREILLVAFDGFTGREGRVRLHRNCVFVVEKLSWVDVA 153
            V+PPG PMVVL  +   LLVAFD FTGREGR+RLHRN V +VE+LSW+DV+
Sbjct:  252 VIPPGVPMVVLDSKPPFLLVAFDTFTGREGRLRLHRNTVSLVERLSWLDVS 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42672.10911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVF6_ECTSI3.560e-1568.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42672contigH-paniculata_contig42672:173..325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7FVF6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein kinase C conserved region 2 (CalB)
EggNOG OGs2CMP7@1,2QR5X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.3631284-CDS-H-paniculata_contig42672:172..3041622930297.3631284-CDS-H-paniculata_contig42672:172..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42672 173..304 -
1691481230.502785-CDS-H-paniculata_contig42672:172..3041691481230.502785-CDS-H-paniculata_contig42672:172..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42672 173..304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.3779502-UTR-H-paniculata_contig42672:304..3251622930297.3779502-UTR-H-paniculata_contig42672:304..325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42672 305..325 -
1691481230.5164018-UTR-H-paniculata_contig42672:304..3251691481230.5164018-UTR-H-paniculata_contig42672:304..325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42672 305..325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42672.10911.1prot_H-paniculata_contig42672.10911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42672 173..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42672.10911.1

>prot_H-paniculata_contig42672.10911.1 ID=prot_H-paniculata_contig42672.10911.1|Name=mRNA_H-paniculata_contig42672.10911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MVVLSRQREILLVAFDGFTGREGRVRLHRNCVFVVEKLSWVDVA
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mRNA from alignment at H-paniculata_contig42672:173..325-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42672.10911.1 ID=mRNA_H-paniculata_contig42672.10911.1|Name=mRNA_H-paniculata_contig42672.10911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig42672:173..325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGCCCCCAGGCGCTCCGATGGTTGTACTTTCGCGTCAGCGAGAAAT
TCTTCTGGTTGCCTTTGATGGCTTCACGGGACGGGAGGGCAGGGTACGGC
TGCATCGCAATTGCGTCTTCGTGGTGGAGAAACTCAGCTGGGTTGACGTT
GCG
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Coding sequence (CDS) from alignment at H-paniculata_contig42672:173..325-

>mRNA_H-paniculata_contig42672.10911.1 ID=mRNA_H-paniculata_contig42672.10911.1|Name=mRNA_H-paniculata_contig42672.10911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig42672:173..325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTACTTTCGCGTCAGCGAGAAATTCTTCTGGTTGCCTTTGATGG
CTTCACGGGACGGGAGGGCAGGGTACGGCTGCATCGCAATTGCGTCTTCG
TGGTGGAGAAACTCAGCTGGGTTGACGTTGCGATGGTTGTACTTTCGCGT
CAGCGAGAAATTCTTCTGGTTGCCTTTGATGGCTTCACGGGACGGGAGGG
CAGGGTACGGCTGCATCGCAATTGCGTCTTCGTGGTGGAGAAACTCAGCT
GGGTTGACGTTGCG
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