mRNA_H-paniculata_contig11703.1091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11703.1091.1
Unique NamemRNA_H-paniculata_contig11703.1091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11703.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11703contigH-paniculata_contig11703:1471..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11703.1091.1prot_H-paniculata_contig11703.1091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11703 1471..2051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.346923-CDS-H-paniculata_contig11703:1470..15781622928879.346923-CDS-H-paniculata_contig11703:1470..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11703 1471..1578 -
1691480654.5885897-CDS-H-paniculata_contig11703:1470..15781691480654.5885897-CDS-H-paniculata_contig11703:1470..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11703 1471..1578 -
1622928879.3613849-CDS-H-paniculata_contig11703:1940..20511622928879.3613849-CDS-H-paniculata_contig11703:1940..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11703 1941..2051 -
1691480654.604061-CDS-H-paniculata_contig11703:1940..20511691480654.604061-CDS-H-paniculata_contig11703:1940..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11703 1941..2051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.3787174-UTR-H-paniculata_contig11703:2051..20631622928879.3787174-UTR-H-paniculata_contig11703:2051..2063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11703 2052..2063 -
1691480654.6124148-UTR-H-paniculata_contig11703:2051..20631691480654.6124148-UTR-H-paniculata_contig11703:2051..2063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11703 2052..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11703.1091.1

>prot_H-paniculata_contig11703.1091.1 ID=prot_H-paniculata_contig11703.1091.1|Name=mRNA_H-paniculata_contig11703.1091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MLLSQGARCLRLAVKCGNVNRWESVTKVLREELSLEQVRDMLLSEGPRLL
RLAARNGNVEGWQSVVRALREEF
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mRNA from alignment at H-paniculata_contig11703:1471..2063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11703.1091.1 ID=mRNA_H-paniculata_contig11703.1091.1|Name=mRNA_H-paniculata_contig11703.1091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=593bp|location=Sequence derived from alignment at H-paniculata_contig11703:1471..2063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATAAAGGAGATGCTTCTTTCACAGGGCGCAAGGTGTCTGCGACTGGC
TGTAAAGTGTGGGAATGTTAACCGATGGGAAAGCGTCACGAAAGTCTTGC
GCGAGGAGCTCAGCCTCGAACAGGTGTAGATTACTCCTGTACAACATCGC
TGATCTCAGAGCAGAATTAGACAAGCGGGTTCGTCTGCTTTTGCCCTTCG
TGTAGTTTTATCAACACATACAGTGGACGCTAGTAGTGGAAGCGACAAGA
CGACTTTTGTGGTTTGCGATGGCGTGAGTGAGCTCACTCGAACCGGATGC
ACCACCGCGTGTGATAACGTGTGCCATGTAACGTGTGCTTCAGTTTGGGT
TGGACTGCATTTTTGCTAAGTGTGGGTCATGATCGACTCCCGGTTGCAGG
CCGCTCGCGCAAACCAAGTCTGAATGGCAGCTGTGCTTTGATTTATGCAA
GAAATGTATCGCCTCTTGCTTGTGGTTGGTTTCAGGTGAGGGATATGCTT
CTTTCGGAGGGGCCAAGGTTGCTGCGATTGGCAGCGAGAAATGGCAACGT
CGAGGGGTGGCAGAGCGTAGTGAGAGCCTTGCGCGAAGAGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11703:1471..2063-

>mRNA_H-paniculata_contig11703.1091.1 ID=mRNA_H-paniculata_contig11703.1091.1|Name=mRNA_H-paniculata_contig11703.1091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig11703:1471..2063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCTTTCACAGGGCGCAAGGTGTCTGCGACTGGCTGTAAAGTGTGG
GAATGTTAACCGATGGGAAAGCGTCACGAAAGTCTTGCGCGAGGAGCTCA
GCCTCGAACAGATGCTTCTTTCACAGGGCGCAAGGTGTCTGCGACTGGCT
GTAAAGTGTGGGAATGTTAACCGATGGGAAAGCGTCACGAAAGTCTTGCG
CGAGGAGCTCAGCCTCGAACAGGTGAGGGATATGCTTCTTTCGGAGGGGC
CAAGGTTGCTGCGATTGGCAGCGAGAAATGGCAACGTCGAGGGGTGGCAG
AGCGTAGTGAGAGCCTTGCGCGAAGAGTTCGTGAGGGATATGCTTCTTTC
GGAGGGGCCAAGGTTGCTGCGATTGGCAGCGAGAAATGGCAACGTCGAGG
GGTGGCAGAGCGTAGTGAGAGCCTTGCGCGAAGAGTTC
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