mRNA_H-paniculata_contig42667.10909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI) HSP 1 Score: 155 bits (393), Expect = 2.360e-42 Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1
Query: 1 LQVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+QVNWLTERLETVG+IAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDV+HLTHVVNYDLPTD +HYVHRAGR
Sbjct: 1099 IQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 1178
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA) HSP 1 Score: 132 bits (332), Expect = 4.020e-34 Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAG 237
QV WLTE+LETVG+IAAPLSGES K++R EIM+RL D R+AMVVTTEMAARG+DV LTHVVNYDLPTD EHYVHRAG
Sbjct: 800 QVRWLTEKLETVGIIAAPLSGESVKEERTEIMKRLTDGRLAMVVTTEMAARGIDVPQLTHVVNYDLPTDAEHYVHRAG 877
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.290e-28 Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V L E+L +G++AAPLSGESSKDDR E +RRLQ +I+++V+TE+AARGLDV LTHVVNYDLPTD EHYVHRAGR
Sbjct: 409 KVQILLEKLLDLGIVAAPLSGESSKDDRKEAVRRLQKGQISVLVSTELAARGLDVPQLTHVVNYDLPTDAEHYVHRAGR 487
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A0G4F225_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F225_VITBC) HSP 1 Score: 105 bits (261), Expect = 1.530e-24 Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V WL + L +IAAPLSG +SKDDRAE+ +R+Q+ +I M V+TE+ ARGLDV L+HVVN DLPTD EHY+HRAGR
Sbjct: 653 RVKWLVDHLLQKQIIAAPLSGFTSKDDRAEVFKRMQNGQIGMAVSTELGARGLDVPWLSHVVNLDLPTDAEHYIHRAGR 731
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A482S7T5_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7T5_9ARCH) HSP 1 Score: 98.2 bits (243), Expect = 4.830e-23 Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHR 231
+V L L G+IAAPLSGESSKDDR E+MRRL++ + +VVTTE+AARGLD+ L+HV+N++LPTD HYVHR
Sbjct: 219 RVKALVSDLLQRGIIAAPLSGESSKDDRKEVMRRLREGGLQLVVTTELAARGLDIPDLSHVINFELPTDSVHYVHR 294
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2RGS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGS7_9STRA) HSP 1 Score: 100 bits (249), Expect = 6.420e-23 Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V L ++L VG+IAAPL GESSK+DR EIMRRL R+ +VVTTE+AARG+D LTHVVN DLP D Y HRAGR
Sbjct: 733 RVKVLCDKLLDVGIIAAPLHGESSKEDRTEIMRRLASGRLGLVVTTELAARGIDAPILTHVVNLDLPPDATRYAHRAGR 811
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2S9L8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9L8_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.920e-22 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V ++L +G+IAAP +GE K DR ++ + L++ + +VV TEMAARG+D +LTHV+NYDLPTD HY HRAGR
Sbjct: 65 RVKITVKKLAEMGIIAAPFTGEEQKQDRTDVNKALREGYVGIVVATEMAARGIDAPYLTHVINYDLPTDASHYAHRAGR 143
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: L1JBQ8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBQ8_GUITC) HSP 1 Score: 90.9 bits (224), Expect = 8.330e-20 Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDK---RIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V+ + ++L G+IAAPL G+ SK+DR E+MRRL++ + +VV TE+AARG+D+ L+HVV+ DLPTD HYVHRAGR
Sbjct: 260 RVDIICDKLFENGLIAAPLKGDESKEDRKEVMRRLREGTLGEVPLVVATEIAARGIDIPGLSHVVSLDLPTDANHYVHRAGR 341
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S4R6D9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6D9_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.480e-19 Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSG--ESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V + ++L +G++AAPL G +S K+DRAE+ R L+D + +VV+TEMAARG+D LTHV+N DLPTD HY HR+GR
Sbjct: 436 KVGIVVDKLADMGIVAAPLFGGTKSDKNDRAEVARALRDGYVGIVVSTEMAARGIDAPLLTHVINLDLPTDASHYAHRSGR 516
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2EH88_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EH88_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.540e-19 Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 4 QVNWLTERLETVGVIAAPLSG--ESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
+V + ++L +G++AAPL G +S K+DRAE+ R L+D + +VV+TEMAARG+D LTHV+N DLPTD HY HR+GR
Sbjct: 715 KVGIVVDKLADMGIVAAPLFGGTKSDKNDRAEVARALRDGYVGIVVSTEMAARGIDAPLLTHVINLDLPTDASHYAHRSGR 795 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42667.10909.1 >prot_H-paniculata_contig42667.10909.1 ID=prot_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp LQVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAback to top mRNA from alignment at H-paniculata_contig42667:473..1060+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42667.10909.1 ID=mRNA_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig42667:473..1060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42667:473..1060+ >mRNA_H-paniculata_contig42667.10909.1 ID=mRNA_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig42667:473..1060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |