mRNA_H-paniculata_contig4266.10908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4266.10908.1
Unique NamemRNA_H-paniculata_contig4266.10908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4266.10908.1 vs. uniprot
Match: A0A2P6N431_9EUKA (Putative LRR receptor-like serine/threonine-protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N431_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 9.200e-5
Identity = 50/168 (29.76%), Postives = 76/168 (45.24%), Query Frame = 1 
Query:   31 GTLTLENCLVEDNQATSGSGGALRVEGGA-VTVTGGEFLRNTATWNGGAISAVDATLTVEDEAKFEGNKAVRGGAIYFVGLSELPGLPDDLPVLSLSDSHFVNNSAWSEKDINIEDDYKLGSTWHWLHGGGALSLAHTKA------NVTGCNFSANEAQVSGGAVFSG 513
            GT++ ++     N A+ G  GAL V G   +++  G F+ N AT  GG  S    TLTV + A FEGN+A +GGAI+    S    +       ++S + F +NSA             +G     L G  ++ L   K       ++   +F  N+A+V G   F G
Sbjct: 1940 GTVSCQSSNFTFNNASDG--GALHVNGSMDISIFQGAFMYNVATRGGGLYSRAINTLTVNNGANFEGNRATQGGAIFSSTFSSHRSI-------TISTAFFDSNSA------------DIGGALLLLSGDHSIILPSKKRQSEYIMSLNRVSFKKNQARVGGALCFYG 2086
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4266.10908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P6N431_9EUKA9.200e-529.76Putative LRR receptor-like serine/threonine-protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4266contigH-paniculata_contig4266:3558..4142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score71.6
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog634498.mru_2090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGsCOG1305@1,arCOG02486@2157,arCOG02487@1,arCOG02487@2157,arCOG02547@1,arCOG02547@2157,arCOG02555@1,arCOG02555@2157
COG Functional cat.S
Best tax levelArchaea
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.1452875-CDS-H-paniculata_contig4266:3557..41421622930297.1452875-CDS-H-paniculata_contig4266:3557..4142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4266 3558..4142 -
1691481230.4148188-CDS-H-paniculata_contig4266:3557..41421691481230.4148188-CDS-H-paniculata_contig4266:3557..4142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4266 3558..4142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4266.10908.1prot_H-paniculata_contig4266.10908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4266 3558..4142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4266.10908.1

>prot_H-paniculata_contig4266.10908.1 ID=prot_H-paniculata_contig4266.10908.1|Name=mRNA_H-paniculata_contig4266.10908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
DTDGGAILSLGTLTLENCLVEDNQATSGSGGALRVEGGAVTVTGGEFLRN
TATWNGGAISAVDATLTVEDEAKFEGNKAVRGGAIYFVGLSELPGLPDDL
PVLSLSDSHFVNNSAWSEKDINIEDDYKLGSTWHWLHGGGALSLAHTKAN
VTGCNFSANEAQVSGGAVFSGNGTAPSFNNCSFFDNKTPGFGGAV
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mRNA from alignment at H-paniculata_contig4266:3558..4142-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4266.10908.1 ID=mRNA_H-paniculata_contig4266.10908.1|Name=mRNA_H-paniculata_contig4266.10908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig4266:3558..4142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCGACGGGGGAGCGATCTTGTCACTGGGTACTTTGACCCTGGAGAA
TTGCTTGGTAGAGGACAATCAAGCAACGTCGGGGAGCGGCGGAGCTTTGC
GGGTGGAAGGCGGAGCAGTGACCGTTACTGGTGGGGAATTTTTGCGAAAT
ACGGCAACTTGGAACGGGGGCGCGATCAGTGCCGTTGACGCCACCCTCAC
AGTAGAGGACGAGGCGAAGTTCGAAGGCAATAAGGCGGTGAGAGGCGGCG
CGATCTACTTCGTGGGCCTGTCTGAATTGCCGGGTTTGCCAGATGACCTT
CCCGTGTTATCCCTGTCGGATTCCCATTTCGTCAACAACAGCGCCTGGAG
TGAAAAAGATATAAATATTGAGGATGATTACAAACTCGGCAGCACGTGGC
ACTGGCTGCATGGCGGAGGTGCCCTGTCGCTTGCGCACACGAAAGCGAAT
GTCACCGGATGCAATTTTTCTGCAAATGAAGCCCAGGTTTCGGGTGGGGC
TGTTTTTTCCGGTAACGGGACGGCACCATCCTTCAATAACTGCTCATTTT
TTGACAATAAAACGCCAGGTTTTGGTGGGGCGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig4266:3558..4142-

>mRNA_H-paniculata_contig4266.10908.1 ID=mRNA_H-paniculata_contig4266.10908.1|Name=mRNA_H-paniculata_contig4266.10908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig4266:3558..4142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCGACGGGGGAGCGATCTTGTCACTGGGTACTTTGACCCTGGAGAA
TTGCTTGGTAGAGGACAATCAAGCAACGTCGGGGAGCGGCGGAGCTTTGC
GGGTGGAAGGCGGAGCAGTGACCGTTACTGGTGGGGAATTTTTGCGAAAT
ACGGCAACTTGGAACGGGGGCGCGATCAGTGCCGTTGACGCCACCCTCAC
AGTAGAGGACGAGGCGAAGTTCGAAGGCAATAAGGCGGTGAGAGGCGGCG
CGATCTACTTCGTGGGCCTGTCTGAATTGCCGGGTTTGCCAGATGACCTT
CCCGTGTTATCCCTGTCGGATTCCCATTTCGTCAACAACAGCGCCTGGAG
TGAAAAAGATATAAATATTGAGGATGATTACAAACTCGGCAGCACGTGGC
ACTGGCTGCATGGCGGAGGTGCCCTGTCGCTTGCGCACACGAAAGCGAAT
GTCACCGGATGCAATTTTTCTGCAAATGAAGCCCAGGTTTCGGGTGGGGC
TGTTTTTTCCGGTAACGGGACGGCACCATCCTTCAATAACTGCTCATTTT
TTGACAATAAAACGCCAGGTTTTGGTGGGGCGGTTGACACCGACGGGGGA
GCGATCTTGTCACTGGGTACTTTGACCCTGGAGAATTGCTTGGTAGAGGA
CAATCAAGCAACGTCGGGGAGCGGCGGAGCTTTGCGGGTGGAAGGCGGAG
CAGTGACCGTTACTGGTGGGGAATTTTTGCGAAATACGGCAACTTGGAAC
GGGGGCGCGATCAGTGCCGTTGACGCCACCCTCACAGTAGAGGACGAGGC
GAAGTTCGAAGGCAATAAGGCGGTGAGAGGCGGCGCGATCTACTTCGTGG
GCCTGTCTGAATTGCCGGGTTTGCCAGATGACCTTCCCGTGTTATCCCTG
TCGGATTCCCATTTCGTCAACAACAGCGCCTGGAGTGAAAAAGATATAAA
TATTGAGGATGATTACAAACTCGGCAGCACGTGGCACTGGCTGCATGGCG
GAGGTGCCCTGTCGCTTGCGCACACGAAAGCGAATGTCACCGGATGCAAT
TTTTCTGCAAATGAAGCCCAGGTTTCGGGTGGGGCTGTTTTTTCCGGTAA
CGGGACGGCACCATCCTTCAATAACTGCTCATTTTTTGACAATAAAACGC
CAGGTTTTGGTGGGGCGGTT
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