prot_H-paniculata_contig42652.10907.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42652.10907.1
Unique Nameprot_H-paniculata_contig42652.10907.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length49
Homology
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-11
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHST 44
            VCLMQ+STRE+D+IVDPL LR ++G+LLP+F+DP I+KV H +
Sbjct:  352 VCLMQLSTREQDYIVDPLKLRGEMGRLLPVFSDPNIVKVFHGS 394          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: H8X0B3_CANO9 (Rrp6 nuclear exosome exonuclease component n=1 Tax=Candida orthopsilosis (strain 90-125) TaxID=1136231 RepID=H8X0B3_CANO9)

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQ+S RE+D+I+D L LR D+  L  IFTDP IIKV+H   M+ +
Sbjct:  310 VCLMQISNREKDWIIDTLVLRGDLSALNKIFTDPKIIKVLHGAFMDII 357          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: UPI001B889F7B (exosome component 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F7B)

HSP 1 Score: 59.3 bits (142), Expect = 5.330e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    3 CLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVH 42
            CLMQ+STRE+D+I+D LTLR+DI  L  +FTDP I+KV+H
Sbjct:  305 CLMQISTREQDYIIDTLTLRSDICMLNDVFTDPNIVKVLH 344          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: W0TFF1_KLUMD (Exosome complex exonuclease RRP6 n=1 Tax=Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275) TaxID=1003335 RepID=W0TFF1_KLUMD)

HSP 1 Score: 58.5 bits (140), Expect = 9.970e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQ+S RE D+IVD + LR D+  L  IFTDPG++KV+H   M+ +
Sbjct:  251 VCLMQISDRENDWIVDTIALRDDLKVLNEIFTDPGVVKVLHGAFMDII 298          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: G8B8I3_CANPC (HRDC domain-containing protein n=1 Tax=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) TaxID=578454 RepID=G8B8I3_CANPC)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-8
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQ+S RE+D+I+D L LR D+  L  +FTDP IIKV+H   M+ +
Sbjct:  266 VCLMQISNREKDWIIDTLVLRDDLSVLNKVFTDPKIIKVLHGAFMDII 313          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: H2AY47_KAZAF (HRDC domain-containing protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AY47_KAZAF)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQ+STRE D++VD + LR D+  L  +FTDP ++KV+H   M+ +
Sbjct:  251 VCLMQISTRETDYLVDTIALRNDLKVLNEVFTDPSVVKVLHGAFMDII 298          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A1E3QLT4_9ASCO (HRDC domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QLT4_9ASCO)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    1 MVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            +VCLMQ+ST E+D+IVD L LR D+  L  +F DPG++KV+H   M+ +
Sbjct:  256 LVCLMQISTSEQDWIVDTLALRDDLQVLNEVFADPGVVKVLHGAFMDII 304          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A1E4TYW0_PACTA (HRDC domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TYW0_PACTA)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            +VCLMQ+S RE+D+I+D L LR D+  L  IFTDP IIKV H   M+ +
Sbjct:  257 LVCLMQISNREKDWIIDTLALRNDLEVLNVIFTDPAIIKVFHGAFMDII 305          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A8E2DLK5_9APHY (HRDC domain-containing protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2DLK5_9APHY)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQVSTRERDF+VD L +R ++ +L  +FTDP I+KV+H    + V
Sbjct:  234 VCLMQVSTRERDFVVDTLQVREEMEELNEVFTDPEIVKVLHGAESDVV 281          
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A8B8UZG0_SACPA (Rrp6 n=1 Tax=Saccharomyces paradoxus TaxID=27291 RepID=A0A8B8UZG0_SACPA)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    2 VCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 49
            VCLMQ+STRERD++VD L LR  +  L  +FTDP I+KV H   M+ +
Sbjct:  251 VCLMQISTRERDYLVDTLQLRETLHILNEVFTDPSIVKVFHGAFMDII 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI1.400e-1165.12HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
H8X0B3_CANO93.900e-956.25Rrp6 nuclear exosome exonuclease component n=1 Tax... [more]
UPI001B889F7B5.330e-965.00exosome component 10-like n=1 Tax=Gigantopelta aeg... [more]
W0TFF1_KLUMD9.970e-954.17Exosome complex exonuclease RRP6 n=1 Tax=Kluyverom... [more]
G8B8I3_CANPC1.360e-854.17HRDC domain-containing protein n=1 Tax=Candida par... [more]
H2AY47_KAZAF1.860e-850.00HRDC domain-containing protein n=1 Tax=Kazachstani... [more]
A0A1E3QLT4_9ASCO1.860e-851.02HRDC domain-containing protein n=1 Tax=Babjeviella... [more]
A0A1E4TYW0_PACTA1.860e-855.10HRDC domain-containing protein n=1 Tax=Pachysolen ... [more]
A0A8E2DLK5_9APHY1.860e-856.25HRDC domain-containing protein n=1 Tax=Obba rivulo... [more]
A0A8B8UZG0_SACPA2.550e-854.17Rrp6 n=1 Tax=Saccharomyces paradoxus TaxID=27291 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.500coord: 1..49
e-value: 9.2E-16
score: 59.8
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 1..44
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 2..43
e-value: 4.7E-6
score: 26.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42652contigH-paniculata_contig42652:962..1108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42652.10907.1mRNA_H-paniculata_contig42652.10907.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42652 962..1123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42652.10907.1 ID=prot_H-paniculata_contig42652.10907.1|Name=mRNA_H-paniculata_contig42652.10907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf