mRNA_H-paniculata_contig42652.10907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42652.10907.1
Unique NamemRNA_H-paniculata_contig42652.10907.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 6.350e-14
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHST 147
            R+F G+VCLMQ+STRE+D+IVDPL LR ++G+LLP+F+DP I+KV H +
Sbjct:  346 RTFLGVVCLMQLSTREQDYIVDPLKLRGEMGRLLPVFSDPNIVKVFHGS 394
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: UPI001B889F7B (exosome component 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F7B)

HSP 1 Score: 68.9 bits (167), Expect = 2.690e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVH 141
            R+FQG+ CLMQ+STRE+D+I+D LTLR+DI  L  +FTDP I+KV+H
Sbjct:  298 RTFQGITCLMQISTREQDYIIDTLTLRSDICMLNDVFTDPNIVKVLH 344
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: L1IRS2_GUITC (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRS2_GUITC)

HSP 1 Score: 65.9 bits (159), Expect = 3.570e-12
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVH 141
            RSFQG  CLMQ+STRE+DFIVD + LR+ I  LLP FTDP I KV H
Sbjct:   21 RSFQGFTCLMQISTREQDFIVDTIELRSCIHLLLPAFTDPKITKVFH 67
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A6P4Z763_BRABE (exosome component 10-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z763_BRABE)

HSP 1 Score: 67.8 bits (164), Expect = 6.860e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIME 156
            RSFQG  CLMQVSTR++D+IVD LTLRAD+  L   FTDP I+KV H   M+
Sbjct:  322 RSFQGFTCLMQVSTRDQDYIVDTLTLRADLHILNDTFTDPKIVKVFHGADMD 373
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A7M5X1L0_9CNID (HRDC domain-containing protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X1L0_9CNID)

HSP 1 Score: 67.0 bits (162), Expect = 1.280e-11
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIME 156
            RSFQG VCLMQ+STRE+DF+VD L LR ++  L  +FTDP I+KV+H   M+
Sbjct:  300 RSFQGFVCLMQISTREKDFVVDTLALRDELYILNEVFTDPKILKVLHGADMD 351
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: H8X0B3_CANO9 (Rrp6 nuclear exosome exonuclease component n=1 Tax=Candida orthopsilosis (strain 90-125) TaxID=1136231 RepID=H8X0B3_CANO9)

HSP 1 Score: 67.0 bits (162), Expect = 1.280e-11
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 162
            RS+ G+VCLMQ+S RE+D+I+D L LR D+  L  IFTDP IIKV+H   M+ +
Sbjct:  304 RSYYGIVCLMQISNREKDWIIDTLVLRGDLSALNKIFTDPKIIKVLHGAFMDII 357
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A7S4JE73_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JE73_GUITH)

HSP 1 Score: 65.9 bits (159), Expect = 1.510e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVH 141
            RSFQG  CLMQ+STRE+DFIVD + LR+ I  LLP FTDP I KV H
Sbjct:  172 RSFQGFTCLMQISTREQDFIVDTIELRSCIHLLLPAFTDPKITKVFH 218
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A1B0C8B9_LUTLO (Uncharacterized protein n=4 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0C8B9_LUTLO)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVH 141
            RSFQG  CLMQ+STRE+D+I+D LTLR D+  L  +FT+PGI+KV H
Sbjct:  315 RSFQGFTCLMQLSTREKDYILDTLTLREDLHVLNEVFTNPGIVKVFH 361
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: A0A8E2DLK5_9APHY (HRDC domain-containing protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2DLK5_9APHY)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV 162
            RSF G VCLMQVSTRERDF+VD L +R ++ +L  +FTDP I+KV+H    + V
Sbjct:  228 RSFSGFVCLMQVSTRERDFVVDTLQVREEMEELNEVFTDPEIVKVLHGAESDVV 281
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BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Match: UPI00106DC1A5 (exosome component 10-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DC1A5)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 RSFQGMVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIME 156
            RSFQG+VCLMQ+ST ERD++VD L LR+++  L  +FTDP I+KV+H   M+
Sbjct:  304 RSFQGIVCLMQISTHERDYLVDTLELRSELPCLNEVFTDPKILKVLHGADMD 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42652.10907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI6.350e-1463.27HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
UPI001B889F7B2.690e-1263.83exosome component 10-like n=1 Tax=Gigantopelta aeg... [more]
L1IRS2_GUITC3.570e-1268.093'-5' exonuclease domain-containing protein (Fragm... [more]
A0A6P4Z763_BRABE6.860e-1263.46exosome component 10-like n=1 Tax=Branchiostoma be... [more]
A0A7M5X1L0_9CNID1.280e-1159.62HRDC domain-containing protein n=2 Tax=Clytia hemi... [more]
H8X0B3_CANO91.280e-1155.56Rrp6 nuclear exosome exonuclease component n=1 Tax... [more]
A0A7S4JE73_GUITH1.510e-1168.09Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A1B0C8B9_LUTLO1.750e-1163.83Uncharacterized protein n=4 Tax=Lutzomyia longipal... [more]
A0A8E2DLK5_9APHY2.390e-1157.41HRDC domain-containing protein n=1 Tax=Obba rivulo... [more]
UPI00106DC1A52.390e-1157.69exosome component 10-like n=1 Tax=Dendronephthya g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42652contigH-paniculata_contig42652:962..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons1
Model size162
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.0906804-CDS-H-paniculata_contig42652:961..11081622930297.0906804-CDS-H-paniculata_contig42652:961..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42652 962..1108 -
1691481230.3844016-CDS-H-paniculata_contig42652:961..11081691481230.3844016-CDS-H-paniculata_contig42652:961..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42652 962..1108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.1043286-UTR-H-paniculata_contig42652:1108..11231622930297.1043286-UTR-H-paniculata_contig42652:1108..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42652 1109..1123 -
1691481230.3968382-UTR-H-paniculata_contig42652:1108..11231691481230.3968382-UTR-H-paniculata_contig42652:1108..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42652 1109..1123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42652.10907.1prot_H-paniculata_contig42652.10907.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42652 962..1108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42652.10907.1

>prot_H-paniculata_contig42652.10907.1 ID=prot_H-paniculata_contig42652.10907.1|Name=mRNA_H-paniculata_contig42652.10907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MVCLMQVSTRERDFIVDPLTLRADIGKLLPIFTDPGIIKVVHSTIMETV
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mRNA from alignment at H-paniculata_contig42652:962..1123-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42652.10907.1 ID=mRNA_H-paniculata_contig42652.10907.1|Name=mRNA_H-paniculata_contig42652.10907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig42652:962..1123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATCGTTCCAGGGCATGGTGTGCCTCATGCAGGTTTCCACCCGCGAGCG
GGACTTCATCGTGGACCCTCTCACGCTGCGCGCCGACATCGGCAAGCTGC
TTCCCATCTTCACTGACCCTGGCATAATCAAGGTAGTTCACTCAACTATA
ATGGAGACTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig42652:962..1123-

>mRNA_H-paniculata_contig42652.10907.1 ID=mRNA_H-paniculata_contig42652.10907.1|Name=mRNA_H-paniculata_contig42652.10907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig42652:962..1123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCCTCATGCAGGTTTCCACCCGCGAGCGGGACTTCATCGTGGA
CCCTCTCACGCTGCGCGCCGACATCGGCAAGCTGCTTCCCATCTTCACTG
ACCCTGGCATAATCAAGGTAGTTCACTCAACTATAATGGAGACTGTGATG
GTGTGCCTCATGCAGGTTTCCACCCGCGAGCGGGACTTCATCGTGGACCC
TCTCACGCTGCGCGCCGACATCGGCAAGCTGCTTCCCATCTTCACTGACC
CTGGCATAATCAAGGTAGTTCACTCAACTATAATGGAGACTGTG
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