mRNA_H-paniculata_contig4265.10906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4265.10906.1
Unique NamemRNA_H-paniculata_contig4265.10906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4265.10906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4265contigH-paniculata_contig4265:9891..10317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D8LCJ5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
Ec32 ortholog descriptionYHYH domain
Ec32 orthologEc-03_002660.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size238
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.0289228-CDS-H-paniculata_contig4265:9890..99371622930297.0289228-CDS-H-paniculata_contig4265:9890..9937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4265 9891..9937 -
1691481230.3647778-CDS-H-paniculata_contig4265:9890..99371691481230.3647778-CDS-H-paniculata_contig4265:9890..9937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4265 9891..9937 -
1622930297.0504293-CDS-H-paniculata_contig4265:10127..103171622930297.0504293-CDS-H-paniculata_contig4265:10127..10317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4265 10128..10317 -
1691481230.3747723-CDS-H-paniculata_contig4265:10127..103171691481230.3747723-CDS-H-paniculata_contig4265:10127..10317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4265 10128..10317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4265.10906.1prot_H-paniculata_contig4265.10906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4265 9891..10317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4265.10906.1

>prot_H-paniculata_contig4265.10906.1 ID=prot_H-paniculata_contig4265.10906.1|Name=mRNA_H-paniculata_contig4265.10906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MYIYRCDSHVEVCDDDAVVGYIESTYTPEAMTSMDEQFDAELIAGVDSEY
INSTVYIDCSLYLGSADASSPASIDDSSS
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mRNA from alignment at H-paniculata_contig4265:9891..10317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4265.10906.1 ID=mRNA_H-paniculata_contig4265.10906.1|Name=mRNA_H-paniculata_contig4265.10906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=427bp|location=Sequence derived from alignment at H-paniculata_contig4265:9891..10317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATCTACAGATGTGACAGCCATGTGGAGGTATGCGACGATGATGC
TGTGGTGGGTTACATCGAATCCACGTACACCCCGGAGGCAATGACCTCTA
TGGATGAGCAGTTCGACGCCGAGCTCATTGCGGGGGTCGATTCGGAATAC
ATCAACTCCACGGTCTACATTGACTGCAGTCTTTATCTTGGTGAGCTGTG
CTGGATGCATATAAAACAAATATCCCAGAAAGTCAATTGTGTGTCTTTAC
ATTTTTTTTTATAACCGACTTTATACTAGTGTTGGCCACGGCGTCATCAC
AACAAATTGCTGACATTTGTTCCCCTCCTTCCTTCCTCCCCCGCGTCACG
ACGCGCGGCCTCACGACGCCATGCCTGTAGGCTCCGCGGATGCGTCTTCA
CCCGCCTCCATTGACGACTCATCGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4265:9891..10317-

>mRNA_H-paniculata_contig4265.10906.1 ID=mRNA_H-paniculata_contig4265.10906.1|Name=mRNA_H-paniculata_contig4265.10906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig4265:9891..10317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATCTACAGATGTGACAGCCATGTGGAGGTATGCGACGATGATGC
TGTGGTGGGTTACATCGAATCCACGTACACCCCGGAGGCAATGACCTCTA
TGGATGAGCAGTTCGACGCCGAGCTCATTGCGGGGGTCGATTCGGAATAC
ATCAACTCCACGGTCTACATTGACTGCAGTCTTTATCTTGATGTATATCT
ACAGATGTGACAGCCATGTGGAGGTATGCGACGATGATGCTGTGGTGGGT
TACATCGAATCCACGTACACCCCGGAGGCAATGACCTCTATGGATGAGCA
GTTCGACGCCGAGCTCATTGCGGGGGTCGATTCGGAATACATCAACTCCA
CGGTCTACATTGACTGCAGTCTTTATCTTGGCTCCGCGGATGCGTCTTCA
CCCGCCTCCATTGACGACTCATCGTCCGCTCCGCGGATGCGTCTTCACCC
GCCTCCATTGACGACTCATCGTCC
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